Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004743

Physical Location & Seq

Genomic Coordinates Forward (+)

33757412 .. 33760662

Gene Structure 3251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG183500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGGGCGACGAGAAAGCGAAAACAGTGGTTGAAGAAGAGCCCAAAATCCCAGTGTTCACAGTCCTTAAGAACGGAGCGATTCTCAAGAACATCTTCATCGTCAACAAACCCCCACCACCGCCACACTCCGAACCAATCGCGTCCGTCCATCAAGAAACCGAAGAAATCTTGATCGTCGGACGCCACCCCGACTGCAACATCGTGCTGACTCACCCCAGCGTCAGCAGATTCCACCTCCAAATCCTCTCTAATCCCTCCTCCCACAAGCTTTCCCTCACCGATTTATCATCAGTTGAAAAAGCAGAACCTGATTGTTCTGATATGAATTTTGAGGGTATGGAGTCTTTATTCTCTGATGAAAATATGGGATTAATTCAGCCTCCGGTGCCTCGAGGAGGGGATCAAAGTGAACAAGGTGTTGACAACTCATCAGAAAATGATTGTGAAGAGAAAAAGATGTGTGAGATTCCAGAAATAGACCAGGTTGTGAATATTTTGCCAATTGAAAAAGCAGAATTTGAATCTACTGAATCAATTTCTGAGGTTATAGAATCTCTAGTCTGTGGTGATAATTTGGGATTTATTGGGCGGAAGGAGATCCCATCAGCACCTCCAATGCCTGAAGAAGAAGGCCGAAGTGAACATGGTGGTGAGAACTTGTCAAAAGTTGTTGGCCAAGAGAATGTGTTGTCAAGCTTCTGGGCCTTTGGAACTGAATCAGTGAACCTGTTTTTTCCTCTTGAAGACTCTTCAAAGGAAAACCAGTATGTGCAACTAAGTTGTGTCACAGGAGGTTCTGAATTGGAAAAACAAGGAGAAGCTTCTCCTACTGTTCAGATATTGGAAAAAGACCAGGGACAGAGTGATATCTCTGGTCTTTCAGCTGGACCTTTTGTGATAGAGAATGCATCCTTGCTGATCCCAGAAGTCCTTGCGGTGACGAAACATCAACAAGTTGAAGAAGTAAACCTGACCCCAGAAACAAAATCAGACTTGTTGGTTAATCTGTATAGCAAAAGCTCTATAACGAAAGACCAAGGACAGGCTGATCAATTGTGTCTATCTTCTGAACCTCTTGAATATTCCGATGACAAGGAAGAGGGTGCCTATCCGGCTGCGCAAATACCTGGGAGAAATGCTGACCAAAGCTCTTTGAGCAAAGACCATGGACAGAATGATAATGTCTTGTGTCTTTCAGCTGGACCTTTTGTGACGGAGAACTCATCCTTGCTGGTTGGGGAAGTCCTTGGGGAGATCAACAATCAAGAAGGTGAAGAAGAAAACCCATCACAAAAACCTACCTTGCTGGTTAACCTGGATTTTGAGATTTCTAATGAAATCAAATGTCTTGTTGATGAAAGACGTGGAGAAACTGAAAAGAGAAGTGTGTCACCCAAAAACCACCATGAAAAGAGGGATACCAAAACCATCTCCTCTGTGCCTCTTGTCACAGATTCTGTAGACTCATTTTCACCAGACAGTGATCTCTCAGAGATAATAGATGACAAAGAGAACCAGACTCCACTATCTATCTGCACTGCAGGAGGACAGCCTGAATCAGAATTCTGTAATAGCCCTCCCCTGAGATCCGAAGATAAGTCAATCTTTGGAGAAAGCATTTGGGAAAGAAGAGGTAAACCTGCTAGTGCTGTTAGGATTCAAACAGAGAGAAGCAGAGAAAGAACTACTGTGGAGGCAGGAATTGATAACGATAATGAACAGGAGGTGGAAAGCTTTACTCCAGACAAGGAGAATCTAACACCAAATACTCTTCGTCTGAGGTCCTTGAAAAAGAAGTTTGAGGTAGAAATTAAGCTGGATGATACTCAAGAGGACCAGGAAATCTTTACTCCTGACAAGGAAAACTTCACACCAAATACTCTTCGACTGAGGTCCTTGAAGAAGAAGGGTAAGCTAGAATTAACCGATTCCAAATCCCACAGATCATCCTTGTCGAAGCAAAACTTAAATTCCAATATCCCTAGAGAAGATCTGCTTGTATTGCCAGGGAAAGAGAACCAGAAGTTGAAGGATATCCAAGAAAGAAAATCAGTAGAAACTACTACTGGGAATCAAGCAAGGGTGGAAAAAAAGTTGATGCTCACAAGCAGCACGAAAAGGATGCCATTCCAATCACTACTTAAAAGTTCTGCAGGCAAGAACAGCAGATCAGAAGCTTCAGTGCCCGGTGTAGCTACTAAAAGCAGCACATTTCTTGCTTGTAGTCGAACAAAGGAGAAGGTCAAGAATCCACTCTCTAATAAATTTGCTGGAGAAAGAAAGAGGGGCTGGACTATGGTTGCAGACACTAATACTCTCCTTCACAAGGAATCAAGGAAGTCATTGCAACTTCTACAAGGTCTTAAGGGGACTCATTTGATCATTCCAAGAATGGTTATACGGGAACTGGATTGCTTGAAACAGCCTGTTCAGAAAGAAAACAGAGGCTTGTTTGGTTCTGGAATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004540 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008995 GO:0009056 GO:0009057 GO:0009555 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016070 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019439 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0034641 GO:0034655 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0046483 GO:0046700 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA PIN_4

Protein Analysis

823

Amino Acids

91.05

Weight (kDa)

4.95

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	58 - 97	2.5e-07	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34355 AT1G34355 AT1G34355
fragaria_vesca	FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232
malus_domestica	MD05G1040500.v1.1 MD10G1046600.v1.1
prunus_persica	Prupe.8G054200_v2.0.a1
pyrus_communis	pycom05g03310 pycom10g03280 pycom10g03290
rosa_chinensis	RchiOBHm_Chr6g0272171
rosa_laevigata	RLG00000013694
rosa_multiflora	Rmu_sc0005748.1_g000012
rosa_roxburghii	Rroxscaffold_7G00196530
rosa_rugosa	Rorug06G0066700
rosa_samantha	Rh6AG183500 Rh6BG183500 Rh6BG183600 Rh6CG184900 Rh6DG176600
rosa_wichuraiana	Rw6G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	390
Acc16I	TGCGCA	1 cut(s)	1119
Acc36I	ACCTGC	1 cut(s)	1648
AccB1I	GGYRCC	2 cut(s)	385, 1103
AccI	GTMKAC	1 cut(s)	1461
AccII	CGCG	1 cut(s)	140
AciI	CCGC	3 cut(s)	119, 589, 935
AclWI	GGATC	4 cut(s)	408, 592, 913, 1581
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	5 cut(s)	325, 515, 1562, 1969, 2264
AcuI	CTGAAG	2 cut(s)	642, 2163
AcyI	GRCGYC	1 cut(s)	181
AfiI	CCNNNNNNNGG	3 cut(s)	395, 1042, 2326
AflII	CTTAAG	2 cut(s)	65, 2363
AjiI	CACGTC	1 cut(s)	1364
AjnI	CCWGG	6 cut(s)	480, 852, 1126, 1314, 1836, 2005
AlwI	GGATC	4 cut(s)	408, 592, 913, 1581
AlwNI	CAGNNNCTG	2 cut(s)	308, 1457
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	3 cut(s)	631, 673, 702
ApeKI	GCWGC	3 cut(s)	1115, 2109, 2205
ApoI	RAATTY	5 cut(s)	325, 515, 1562, 1969, 2264
AseI	ATTAAT	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	1120
AspS9I	GGNCC	6 cut(s)	702, 887, 1202, 1782, 1834, 1893
AsuC2I	CCSGG	1 cut(s)	2187
AsuHPI	GGTGA	8 cut(s)	203, 268, 578, 662, 949, 1283, 1383, 1464
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	5 cut(s)	887, 1202, 1782, 1834, 1893
BaeGI	GKGCMC	1 cut(s)	2187
BalI	TGGCCA	1 cut(s)	675
BanI	GGYRCC	2 cut(s)	385, 1103
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	750
BbvI	GCAGC	3 cut(s)	1102, 2121, 2217
BccI	CCATC	4 cut(s)	156, 610, 1294, 1436
BcgI	CGANNNNNNTGC	2 cut(s)	2104, 2138
BciT130I	CCWGG	6 cut(s)	482, 854, 1128, 1316, 1838, 2007
BciVI	GTATCC	1 cut(s)	1411
BclI	TGATCA	2 cut(s)	1048, 2379
BcnI	CCSGG	1 cut(s)	2187
BfaI	CTAG	4 cut(s)	557, 1644, 1916, 1983
BfmI	CTRYAG	3 cut(s)	1458, 1539, 2151
BfrI	CTTAAG	2 cut(s)	65, 2363
BfuAI	ACCTGC	1 cut(s)	1648
BfuI	GTATCC	1 cut(s)	1411
BglI	GCCNNNNNGGC	1 cut(s)	1112
BglII	AGATCT	1 cut(s)	1990
BisI	GCNGC	3 cut(s)	1116, 2110, 2206
BlsI	GCNGC	3 cut(s)	1117, 2111, 2207
Bme1390I	CCNGG	7 cut(s)	482, 854, 1128, 1316, 1838, 2007, 2187
Bme18I	GGWCC	5 cut(s)	887, 1202, 1782, 1834, 1893
BmeT110I	CYCGRG	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	1364
BmgT120I	GGNCC	6 cut(s)	702, 887, 1202, 1782, 1834, 1893
BmiI	GGNNCC	2 cut(s)	387, 1105
BmrFI	CCNGG	7 cut(s)	482, 854, 1128, 1316, 1838, 2007, 2187
BmrI	ACTGGG	2 cut(s)	44, 2076
BmsI	GCATC	3 cut(s)	917, 2088, 2112
BmuI	ACTGGG	2 cut(s)	44, 2076
BoxI	GACNNNNGTC	1 cut(s)	1891
BpiI	GAAGAC	1 cut(s)	750
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	2 cut(s)	1725, 2292
BpuEI	CTTGAG	2 cut(s)	68, 1812
BpuMI	CCSGG	1 cut(s)	2187
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	6 cut(s)	853, 1036, 1127, 1165, 1246, 2006
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 1042, 2326
Bse1I	ACTGG	4 cut(s)	50, 763, 2071, 2412
Bse3DI	GCAATG	1 cut(s)	2342
BseBI	CCWGG	6 cut(s)	482, 854, 1128, 1316, 1838, 2007
BseDI	CCNNGG	6 cut(s)	853, 1036, 1127, 1165, 1246, 2006
BseGI	GGATG	5 cut(s)	908, 1223, 1825, 1946, 2127
BseLI	CCNNNNNNNGG	3 cut(s)	395, 1042, 2326
BseMI	GCAATG	1 cut(s)	2342
BseMII	CTCAG	5 cut(s)	531, 1503, 1574, 1769, 1880
BseNI	ACTGG	4 cut(s)	50, 763, 2071, 2412
BseRI	GAGGAG	3 cut(s)	247, 408, 1423
BseSI	GKGCMC	1 cut(s)	2187
BseXI	GCAGC	3 cut(s)	1102, 2121, 2217
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	1519
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	3 cut(s)	633, 675, 704
BshNI	GGYRCC	2 cut(s)	385, 1103
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	3 cut(s)	383, 1112, 2187
BslFI	GGGAC	2 cut(s)	870, 2383
BslI	CCNNNNNNNGG	3 cut(s)	395, 1042, 2326
BsmFI	GGGAC	2 cut(s)	870, 2383
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	3 cut(s)	633, 675, 704
BsoBI	CYCGRG	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	42, 2187
Bsp19I	CCATGG	1 cut(s)	1165
BspACI	CCGC	3 cut(s)	119, 589, 935
BspANI	GGCC	3 cut(s)	633, 675, 704
BspCNI	CTCAG	5 cut(s)	532, 1502, 1575, 1770, 1881
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	2 cut(s)	387, 1105
BspMAI	CTGCAG	2 cut(s)	1543, 2155
BspMI	ACCTGC	1 cut(s)	1648
BspPI	GGATC	4 cut(s)	408, 592, 913, 1581
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	2 cut(s)	385, 1103
BspTI	CTTAAG	2 cut(s)	65, 2363
BsrDI	GCAATG	1 cut(s)	2342
BsrI	ACTGG	4 cut(s)	50, 763, 2071, 2412
BssECI	CCNNGG	6 cut(s)	853, 1036, 1127, 1165, 1246, 2006
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	3 cut(s)	1036, 1165, 1246
Bst2UI	CCWGG	6 cut(s)	482, 854, 1128, 1316, 1838, 2007
Bst4CI	ACNGT	5 cut(s)	25, 61, 832, 1481, 1690
Bst6I	CTCTTC	7 cut(s)	30, 441, 754, 1092, 1624, 1776, 1887
BstACI	GRCGYC	1 cut(s)	181
BstAFI	CTTAAG	2 cut(s)	65, 2363
BstC8I	GCNNGC	1 cut(s)	2155
BstDEI	CTNAG	6 cut(s)	540, 776, 1489, 1583, 1778, 1889
BstDSI	CCRYGG	1 cut(s)	1165
BstENI	CCTNNNNNAGG	2 cut(s)	393, 2324
BstF5I	GGATG	5 cut(s)	908, 1223, 1825, 1946, 2127
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	1120
BstMWI	GCNNNNNNNGC	5 cut(s)	385, 1112, 1155, 2002, 2163
BstNI	CCWGG	6 cut(s)	482, 854, 1128, 1316, 1838, 2007
BstPAI	GACNNNNGTC	1 cut(s)	1891
BstSCI	CCNGG	7 cut(s)	480, 852, 1126, 1314, 1836, 2005, 2185
BstSFI	CTRYAG	3 cut(s)	1458, 1539, 2151
BstSLI	GKGCMC	1 cut(s)	2187
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	1102, 2121, 2217
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	3 cut(s)	597, 1586, 1990
BstYI	RGATCY	3 cut(s)	597, 1586, 1990
BsuI	GTATCC	1 cut(s)	1411
BsuRI	GGCC	3 cut(s)	633, 675, 704
BtgI	CCRYGG	1 cut(s)	1165
BtrI	CACGTC	1 cut(s)	1364
BtsCI	GGATG	5 cut(s)	908, 1223, 1825, 1946, 2127
BtsI	GCAGTG	1 cut(s)	1536
BtsIMutI	CAGTG	6 cut(s)	30, 57, 726, 1486, 1536, 2187
BveI	ACCTGC	1 cut(s)	1648
Cac8I	GCNNGC	1 cut(s)	2155
CaiI	CAGNNNCTG	2 cut(s)	308, 1457
CfoI	GCGC	1 cut(s)	1120
Cfr13I	GGNCC	6 cut(s)	702, 887, 1202, 1782, 1834, 1893
CseI	GACGC	3 cut(s)	129, 189, 208
CsiI	ACCWGGT	1 cut(s)	480
CviAII	CATG	3 cut(s)	644, 1166, 1406
DdeI	CTNAG	6 cut(s)	540, 776, 1489, 1583, 1778, 1889
EaeI	YGGCCR	1 cut(s)	673
Eam1104I	CTCTTC	7 cut(s)	30, 441, 754, 1092, 1624, 1776, 1887
EarI	CTCTTC	7 cut(s)	30, 441, 754, 1092, 1624, 1776, 1887
EciI	GGCGGA	1 cut(s)	604
Eco130I	CCWWGG	3 cut(s)	1036, 1165, 1246
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	2 cut(s)	868, 2035
Eco47I	GGWCC	5 cut(s)	887, 1202, 1782, 1834, 1893
Eco57I	CTGAAG	2 cut(s)	642, 2163
Eco88I	CYCGRG	1 cut(s)	390
EcoNI	CCTNNNNNAGG	2 cut(s)	393, 2324
EcoO109I	RGGNCCY	2 cut(s)	1782, 1893
EcoRI	GAATTC	1 cut(s)	1562
EcoRII	CCWGG	6 cut(s)	480, 852, 1126, 1314, 1836, 2005
EcoRV	GATATC	2 cut(s)	868, 2035
EcoT14I	CCWWGG	3 cut(s)	1036, 1165, 1246
EcoT22I	ATGCAT	1 cut(s)	910
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	3 cut(s)	1036, 1165, 1246
FaeI	CATG	3 cut(s)	647, 1169, 1409
FaqI	GGGAC	2 cut(s)	870, 2383
FatI	CATG	3 cut(s)	643, 1165, 1405
FbaI	TGATCA	2 cut(s)	1048, 2379
FblI	GTMKAC	1 cut(s)	1461
Fnu4HI	GCNGC	3 cut(s)	1116, 2110, 2206
FokI	GGATG	5 cut(s)	895, 1210, 1832, 1933, 2134
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	3 cut(s)	1116, 2110, 2206
FspBI	CTAG	4 cut(s)	557, 1644, 1916, 1983
FspI	TGCGCA	1 cut(s)	1119
GlaI	GCGC	1 cut(s)	1119
GluI	GCNGC	3 cut(s)	1116, 2110, 2206
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	2 cut(s)	1725, 2292
HaeIII	GGCC	3 cut(s)	633, 675, 704
HapII	CCGG	3 cut(s)	383, 1112, 2187
HgaI	GACGC	3 cut(s)	129, 189, 208
HhaI	GCGC	1 cut(s)	1120
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	647, 1169, 1409
Hin6I	GCGC	1 cut(s)	1118
HinP1I	GCGC	1 cut(s)	1118
HincII	GTYRAC	3 cut(s)	103, 421, 1312
HindII	GTYRAC	3 cut(s)	103, 421, 1312
HindIII	AAGCTT	5 cut(s)	266, 694, 819, 1732, 2175
HpaI	GTTAAC	1 cut(s)	1312
HpaII	CCGG	3 cut(s)	383, 1112, 2187
HphI	GGTGA	8 cut(s)	203, 268, 578, 662, 949, 1283, 1383, 1464
Hpy99I	CGWCG	2 cut(s)	11, 179
HpyAV	CCTTC	7 cut(s)	586, 623, 1262, 1900, 2023, 2233, 2330
HpyCH4III	ACNGT	5 cut(s)	25, 61, 832, 1481, 1690
HpyCH4IV	ACGT	1 cut(s)	1363
HpyCH4V	TGCA	8 cut(s)	195, 772, 908, 1536, 1541, 2153, 2303, 2347
HpyF10VI	GCNNNNNNNGC	5 cut(s)	385, 1112, 1155, 2002, 2163
HpyF3I	CTNAG	6 cut(s)	540, 776, 1489, 1583, 1778, 1889
HpySE526I	ACGT	1 cut(s)	1363
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	3 cut(s)	647, 1169, 1409
HspAI	GCGC	1 cut(s)	1118
Ksp22I	TGATCA	2 cut(s)	1048, 2379
KspAI	GTTAAC	1 cut(s)	1312
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	3 cut(s)	1102, 2121, 2217
LweI	GCATC	3 cut(s)	917, 2088, 2112
MabI	ACCWGGT	1 cut(s)	480
MaeI	CTAG	4 cut(s)	557, 1644, 1916, 1983
MaeII	ACGT	1 cut(s)	1363
MaeIII	GTNAC	5 cut(s)	784, 937, 1210, 1389, 1447
MfeI	CAATTG	2 cut(s)	501, 1052
MflI	RGATCY	3 cut(s)	597, 1586, 1990
MhlI	GDGCHC	2 cut(s)	42, 2187
MlsI	TGGCCA	1 cut(s)	675
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	6 cut(s)	202, 350, 740, 1457, 1513, 2365
MmeI	TCCRAC	1 cut(s)	157
Mox20I	TGGCCA	1 cut(s)	675
Mph1103I	ATGCAT	1 cut(s)	910
MroXI	GAANNNNTTC	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	9 cut(s)	66, 371, 1002, 1311, 1812, 1922, 1967, 2142, 2364
MslI	CAYNNNNRTG	1 cut(s)	648
Msp20I	TGGCCA	1 cut(s)	675
MspA1I	CMGCKG	2 cut(s)	884, 1199
MspCI	CTTAAG	2 cut(s)	65, 2363
MspI	CCGG	3 cut(s)	383, 1112, 2187
MspR9I	CCNGG	7 cut(s)	482, 854, 1128, 1316, 1838, 2007, 2187
MunI	CAATTG	2 cut(s)	501, 1052
Mva1269I	GAATGC	1 cut(s)	910
MvaI	CCWGG	6 cut(s)	482, 854, 1128, 1316, 1838, 2007
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	5 cut(s)	385, 1112, 1155, 2002, 2163
NciI	CCSGG	1 cut(s)	2187
NcoI	CCATGG	1 cut(s)	1165
NlaIII	CATG	3 cut(s)	647, 1169, 1409
NlaIV	GGNNCC	2 cut(s)	387, 1105
NmuCI	GTSAC	5 cut(s)	784, 937, 1210, 1389, 1447
NsbI	TGCGCA	1 cut(s)	1119
NsiI	ATGCAT	1 cut(s)	910
PaeR7I	CTCGAG	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	910
PdmI	GAANNNNTTC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	1117, 2111, 2207
PleI	GAGTC	6 cut(s)	202, 349, 740, 1457, 1513, 2365
PpsI	GAGTC	6 cut(s)	202, 349, 740, 1457, 1513, 2365
PpuMI	RGGWCCY	2 cut(s)	1782, 1893
PshAI	GACNNNNGTC	1 cut(s)	1891
PshBI	ATTAAT	1 cut(s)	371
Psp5II	RGGWCCY	2 cut(s)	1782, 1893
Psp6I	CCWGG	6 cut(s)	480, 852, 1126, 1314, 1836, 2005
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	6 cut(s)	480, 852, 1126, 1314, 1836, 2005
PspN4I	GGNNCC	2 cut(s)	387, 1105
PspPI	GGNCC	6 cut(s)	702, 887, 1202, 1782, 1834, 1893
PspPPI	RGGWCCY	2 cut(s)	1782, 1893
PspXI	VCTCGAGB	1 cut(s)	390
PstI	CTGCAG	2 cut(s)	1543, 2155
PstNI	CAGNNNCTG	2 cut(s)	308, 1457
PsuI	RGATCY	3 cut(s)	597, 1586, 1990
PvuII	CAGCTG	2 cut(s)	884, 1199
RseI	CAYNNNNRTG	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	9 cut(s)	66, 371, 1002, 1311, 1812, 1922, 1967, 2142, 2364
SatI	GCNGC	3 cut(s)	1116, 2110, 2206
Sau96I	GGNCC	6 cut(s)	702, 887, 1202, 1782, 1834, 1893
SchI	GAGTC	6 cut(s)	202, 350, 740, 1457, 1513, 2365
ScrFI	CCNGG	7 cut(s)	482, 854, 1128, 1316, 1838, 2007, 2187
SduI	GDGCHC	2 cut(s)	42, 2187
SexAI	ACCWGGT	1 cut(s)	480
SfaNI	GCATC	3 cut(s)	917, 2088, 2112
SfcI	CTRYAG	3 cut(s)	1458, 1539, 2151
Sfr274I	CTCGAG	1 cut(s)	390
SinI	GGWCC	5 cut(s)	887, 1202, 1782, 1834, 1893
SlaI	CTCGAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	5 cut(s)	65, 83, 390, 1827, 2363
SmoI	CTYRAG	5 cut(s)	65, 83, 390, 1827, 2363
SsiI	CCGC	3 cut(s)	119, 589, 935
SspI	AATATT	2 cut(s)	493, 1082
SspMI	CTAG	4 cut(s)	557, 1644, 1916, 1983
StyD4I	CCNGG	7 cut(s)	480, 852, 1126, 1314, 1836, 2005, 2185
StyI	CCWWGG	3 cut(s)	1036, 1165, 1246
TaaI	ACNGT	5 cut(s)	25, 61, 832, 1481, 1690
TaiI	ACGT	1 cut(s)	1366
TaqI	TCGA	4 cut(s)	391, 1885, 1955, 2227
Tru1I	TTAA	9 cut(s)	66, 371, 1002, 1311, 1812, 1922, 1967, 2142, 2364
Tru9I	TTAA	9 cut(s)	66, 371, 1002, 1311, 1812, 1922, 1967, 2142, 2364
TscAI	CASTG	6 cut(s)	30, 57, 726, 1486, 1543, 2187
TseFI	GTSAC	5 cut(s)	784, 937, 1210, 1389, 1447
TseI	GCWGC	3 cut(s)	1115, 2109, 2205
Tsp45I	GTSAC	5 cut(s)	784, 937, 1210, 1389, 1447
TspDTI	ATGAA	7 cut(s)	85, 338, 372, 1350, 1371, 1422, 1731
TspGWI	ACGGA	3 cut(s)	87, 133, 1229
TspRI	CASTG	6 cut(s)	30, 57, 726, 1486, 1543, 2187
Vha464I	CTTAAG	2 cut(s)	65, 2363
VpaK11BI	GGWCC	5 cut(s)	887, 1202, 1782, 1834, 1893
VspI	ATTAAT	1 cut(s)	371
XagI	CCTNNNNNAGG	2 cut(s)	393, 2324
XapI	RAATTY	5 cut(s)	325, 515, 1562, 1969, 2264
XhoI	CTCGAG	1 cut(s)	390
XmiI	GTMKAC	1 cut(s)	1461
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	4 cut(s)	557, 1644, 1916, 1983
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.