Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004743

Physical Location & Seq

Genomic Coordinates Forward (+)

8813883 .. 8814860

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0066700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTCGAAACTGTATTTTTCTCCTCTCCCTTTTGATAACACTTGCAGGCCTTCACGCCGCGCATGCAGTCGACTACACAGTCACCAACAACGCCGCATCAAGCGCCGGTGGCATCCGATTCAACAACGACATCGGAGCAGACTATAGCTTGCAAACACTAAGCTCTGCGGCCGACTTCATATGGAAAGTCTTCCAGCAAAGCACAGATGCGGATAGAAAGAGCGTAGCCAAAGTCAGCTTGTTCATCGACAACATGGACGGCGTGGCGTACGCTAGCAACAACGAGATTCATGTTAGCGCCAGTTACATAGCAGACTACTCAGGCGACGTGAAGAAGGAGATTACAGGTGTGCTTTACCACGAATCGACGCACATATGGCAGTGGAATGGAAATGGTCAAGCCCCAGGTGGGTTGATTGAAGGAATTGCAGACTTTGTGAGGTTGAGGGCTGGGTATGCACCGAGTCACTGGGTTCAACCAGGTGAAGGGGATAGGTGGGACCAGGGTTATGATGTTACTGCCAGGTTTTTGGATTACTGTACTAGTTTGAAAGATGGGTTTGTTGCAGAGTTGAACAACAAGTTGAAGACTGGTTATAGTGTTAACTACTTTGTTGATATTTTGGGGAAGAATGTTGATCAGCTCTGGGCTGATTACAAGGCTAAATATGGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004540 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008995 GO:0009056 GO:0009057 GO:0009555 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016070 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019439 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0034641 GO:0034655 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0046483 GO:0046700 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA PIN_4

Protein Analysis

226

Amino Acids

24.88

Weight (kDa)

5.43

Isoelectric Point (pI)

23.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	23 - 220	1.2e-79	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34355 AT1G34355 AT1G34355
fragaria_vesca	FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232
malus_domestica	MD05G1040500.v1.1 MD10G1046600.v1.1
prunus_persica	Prupe.8G054200_v2.0.a1
pyrus_communis	pycom05g03310 pycom10g03280 pycom10g03290
rosa_chinensis	RchiOBHm_Chr6g0272171
rosa_laevigata	RLG00000013694
rosa_multiflora	Rmu_sc0005748.1_g000012
rosa_roxburghii	Rroxscaffold_7G00196530
rosa_rugosa	Rorug06G0066700
rosa_samantha	Rh6AG183500 Rh6BG183500 Rh6BG183600 Rh6CG184900 Rh6DG176600
rosa_wichuraiana	Rw6G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 96, 170, 212
AcoI	YGGCCR	1 cut(s)	171
AfaI	GTAC	2 cut(s)	272, 544
AfiI	CCNNNNNNNGG	2 cut(s)	411, 488
AgsI	TTSAA	6 cut(s)	124, 422, 479, 553, 577, 589
AhlI	ACTAGT	1 cut(s)	545
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	4 cut(s)	406, 481, 504, 524
AluBI	AGCT	4 cut(s)	150, 165, 240, 646
AluI	AGCT	4 cut(s)	150, 165, 240, 646
AoxI	GGCC	2 cut(s)	49, 171
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	3 cut(s)	64, 107, 302
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	76, 497
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	502
BbsI	GAAGAC	2 cut(s)	184, 596
BccI	CCATC	1 cut(s)	551
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	4 cut(s)	408, 483, 506, 526
BclI	TGATCA	1 cut(s)	640
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	2 cut(s)	276, 546
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	2 cut(s)	108, 303
BisI	GCNGC	3 cut(s)	60, 96, 171
BlsI	GCNGC	3 cut(s)	61, 97, 172
Bme1390I	CCNGG	4 cut(s)	408, 483, 506, 526
Bme18I	GGWCC	1 cut(s)	502
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	4 cut(s)	408, 483, 506, 526
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	3 cut(s)	107, 123, 199
BmtI	GCTAGC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	481
BpiI	GAAGAC	2 cut(s)	184, 596
BsaJI	CCNNGG	2 cut(s)	406, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 488
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	3 cut(s)	303, 476, 598
BseBI	CCWGG	4 cut(s)	408, 483, 506, 526
BseDI	CCNNGG	2 cut(s)	406, 505
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	411, 488
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	3 cut(s)	303, 476, 598
BseRI	GAGGAG	1 cut(s)	14
BseX3I	CGGCCG	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	51, 173
BsiEI	CGRYCG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	108
BsiWI	CGTACG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	411, 488
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	51, 173
Bsp143I	GATC	1 cut(s)	640
BspACI	CCGC	4 cut(s)	60, 96, 170, 212
BspANI	GGCC	2 cut(s)	51, 173
BspCNI	CTCAG	1 cut(s)	335
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	503
BspOI	GCTAGC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	3 cut(s)	303, 476, 598
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	406, 505
BssMI	GATC	1 cut(s)	640
Bst2UI	CCWGG	4 cut(s)	408, 483, 506, 526
Bst4CI	ACNGT	3 cut(s)	14, 82, 542
BstC8I	GCNNGC	4 cut(s)	49, 66, 152, 277
BstDEI	CTNAG	2 cut(s)	161, 322
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	2 cut(s)	108, 303
BstHHI	GCGC	3 cut(s)	64, 107, 302
BstKTI	GATC	1 cut(s)	643
BstMBI	GATC	1 cut(s)	640
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 104, 111, 379, 458
BstNI	CCWGG	4 cut(s)	408, 483, 506, 526
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	4 cut(s)	406, 481, 504, 524
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	184, 596
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	51, 173
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	2 cut(s)	389, 469
Cac8I	GCNNGC	4 cut(s)	49, 66, 152, 277
CfoI	GCGC	3 cut(s)	64, 107, 302
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	502
CseI	GACGC	1 cut(s)	379
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	271, 543
CviAII	CATG	3 cut(s)	65, 256, 293
CviQI	GTAC	2 cut(s)	271, 543
DdeI	CTNAG	2 cut(s)	161, 322
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	171
EagI	CGGCCG	1 cut(s)	171
EclXI	CGGCCG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	502
Eco52I	CGGCCG	1 cut(s)	171
EcoRII	CCWGG	4 cut(s)	406, 481, 504, 524
FaeI	CATG	3 cut(s)	68, 259, 296
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	3 cut(s)	64, 255, 292
FauNDI	CATATG	2 cut(s)	182, 377
FbaI	TGATCA	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	60, 96, 171
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	60, 96, 171
FspBI	CTAG	2 cut(s)	276, 546
GlaI	GCGC	3 cut(s)	63, 106, 301
GluI	GCNGC	3 cut(s)	60, 96, 171
GsaI	CCCAGC	1 cut(s)	456
HaeII	RGCGCY	2 cut(s)	108, 303
HaeIII	GGCC	2 cut(s)	51, 173
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	3 cut(s)	64, 107, 302
Hin1II	CATG	3 cut(s)	68, 259, 296
Hin6I	GCGC	3 cut(s)	62, 105, 300
HinP1I	GCGC	3 cut(s)	62, 105, 300
HincII	GTYRAC	2 cut(s)	73, 607
HindII	GTYRAC	2 cut(s)	73, 607
HinfI	GANTC	4 cut(s)	120, 289, 365, 466
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	76, 497
Hpy166II	GTNNAC	2 cut(s)	73, 607
Hpy188I	TCNGA	2 cut(s)	119, 137
Hpy8I	GTNNAC	2 cut(s)	73, 607
Hpy99I	CGWCG	2 cut(s)	332, 373
HpyAV	CCTTC	4 cut(s)	62, 331, 416, 482
HpyCH4III	ACNGT	3 cut(s)	14, 82, 542
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	6 cut(s)	47, 68, 154, 431, 461, 569
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 104, 111, 379, 458
HpyF3I	CTNAG	2 cut(s)	161, 322
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	68, 259, 296
HspAI	GCGC	3 cut(s)	62, 105, 300
Ksp22I	TGATCA	1 cut(s)	640
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	1 cut(s)	640
LmnI	GCTCC	1 cut(s)	137
LweI	GCATC	3 cut(s)	107, 123, 199
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	2 cut(s)	276, 546
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	4 cut(s)	82, 305, 467, 517
MalI	GATC	1 cut(s)	642
MboI	GATC	1 cut(s)	640
MboII	GAAGA	4 cut(s)	184, 346, 601, 643
MluCI	AATT	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	3 cut(s)	35, 435, 441
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	606
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	4 cut(s)	408, 483, 506, 526
MvaI	CCWGG	4 cut(s)	408, 483, 506, 526
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	65, 104, 111, 379, 458
NdeI	CATATG	2 cut(s)	182, 377
NdeII	GATC	1 cut(s)	640
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	3 cut(s)	68, 259, 296
NlaIV	GGNNCC	1 cut(s)	503
NmuCI	GTSAC	2 cut(s)	82, 467
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	120, 289, 365
Pfl23II	CGTACG	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	61, 97, 172
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
Psp6I	CCWGG	4 cut(s)	406, 481, 504, 524
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	4 cut(s)	406, 481, 504, 524
PspLI	CGTACG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	502
RsaI	GTAC	2 cut(s)	272, 544
RsaNI	GTAC	2 cut(s)	271, 543
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	3 cut(s)	60, 96, 171
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	4 cut(s)	408, 483, 506, 526
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	3 cut(s)	107, 123, 199
SfcI	CTRYAG	1 cut(s)	145
SgrAI	CRCCGGYG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	502
SpeI	ACTAGT	1 cut(s)	545
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	1 cut(s)	426
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	4 cut(s)	60, 96, 170, 212
SspMI	CTAG	2 cut(s)	276, 546
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	406, 481, 504, 524
TaaI	ACNGT	3 cut(s)	14, 82, 542
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	4 cut(s)	7, 72, 249, 368
TasI	AATT	1 cut(s)	426
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	3 cut(s)	62, 98, 173
TfiI	GAWTC	3 cut(s)	120, 289, 365
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	2 cut(s)	389, 476
TseFI	GTSAC	2 cut(s)	82, 467
Tsp45I	GTSAC	2 cut(s)	82, 467
TspDTI	ATGAA	3 cut(s)	169, 235, 281
TspRI	CASTG	2 cut(s)	389, 476
VpaK11BI	GGWCC	1 cut(s)	502
XceI	RCATGY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	276, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.