Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004743

Physical Location & Seq

Genomic Coordinates Reverse (-)

30907317 .. 30911162

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG176600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2973 bp

ATGGGCGACGAGAAAGCGAAAACAGTGGTTGAAGAAGAGCCCAAAATCCCAGTGTTCACAGTCCTTAAGAACGGAGCGATTCTCAAGAACATCTTCATCGTCAACAAACCCCCACCACCGCCACACTCCGAACCAATCTCGTCCGTCCATCAAGAAACCGAAGAAATCTTGATCGTCGGACGCCACCCCGACTGCAACATCGTGCTGACTCACCCCAGCGTCAGCAGATTCCACCTCCAAATCCTCTCTAATCCCTCCTCCCACAAGCTTTCCCTCACCGATTTATCATCAGTTGAAACCGCAGAACCTGATTGTTCTGATATGAATTTTGAGGGTATGGAGTCTTTATTCTCTGATGAAAATATGGGATTAATTCAACCTCCGGTGCCTCGAGGAGGAGATCAAAGTGAACAAGGTGTTGACAACTCATCAGAAGATGATTGTCAAGAGAAAAAGATGTGTGAGATTCCAGAAATAGACCAGGTTGTGAATATTTTGCCAATTGAAAAAGCAGAATTTGAATCTACTGAATCAATTTCTGAGGTTATAGAATCTCTAGTCTGTGGTGATAATTTGGGATTTATTGGGCGGAAGGAGATCCCATCAGCACCTCCAATGCCTGAAGAAGAAGAAGACCGAAGTGAACATGGTGGTGAGAACTCGTCAAAAGTTGTTGGCCAAGAGAATGTGTTGTCAAGCTTCTGGGCCTTTGGAACTGAATCGGTGAACCTGTTTTTTCCTCTTGAAGACTCTTCAAAGGAAAACCAGTACGTGCAACTAAGTTGTGTCACAGGAGGTTCTGAATTGGAAAAAGACCAGGGACAGAGTGATATCTCTGGCCTTTCAGCTGGACCTTTTGTGATAGAGAATTCATCCTTGCTGATCCGAGAAGTCCTTGCGGAGACGAAACATCAACAAATTGAAGAAGTAAACCTGACCCCAGAAACAAAATCAGACTTGCTGGTTAATCTTGATGGCAAAAGCTCTATAACGAAAGACCATGGACAGGCTGATCAATTGTGTCTATCTTCTGAACCTCTTGAATATTCTGTTGACAAGGAAGAGGGTGCCTATCCTGCTGCGCAAATACCTGGGAGAAATGCTGACCAAAGCTCTTTGAGCAAAGACCATGGACAGAATGATAATGTCTTGTGTCTTTCAGCTGGACCTTTTGTGACGGAGAACTCATCCTTGCTGGTTGGGGAAGTCCTTGGGGAGATCAACAATCAACAAGGTGAAGAAGAAAACCCATCACAAAAACCAACCTTGCTGGTTAACCTGGATTTTGAGATTTCTAATGAAATCAGATGTCTTGTTGATGAAAGACGTGGAGAAACTGAAAAGAGAAGTGTGTCATCCAAAAACCACCATGGAAAGAGGGATACCAAAACCAGCTCCTCTGTGCCTCTTGTCACAGATTCTGTAGACTCATTTTCACCAGACAGGGATCTCTCAGAGATAATAGATGACAAACAGAACCAGACTCCACTATCTATCTGCACTGCAGGAGGACAGCCTGAATCAGAATTCTGTAATAGCCCTCCCCTGAGATCTGAAGATAAGTCGATCTTTGGAGAAAGCATTTGGGAAAGAAGAGGTAAACCTGCTAGTGCTGTTAGGATTCAAACAGAGAGAAGCAGAGAAAAAACTACTGTGGAGGCAGGAATTGATAACGATAATGAACAGGAGGTGGAAACCTTTACTCCAGACAAGGAGAATCTAACACCAAATACTCTTCGTCTGAGGTCCTTGAAAAAGAAGTTTGAGGTAGAAATTAAGCTGGATGATACTGAAGAGGAGCGGGAAATCTTTACTCCTGACAAGGAAAACTTCACACCAAATAATCTTCGACTGGGGTCCTTGAAGAAGAAGGGTAAGCTAGAATTAACCGATTCCAAATCCCACAGATCATCCTTGTTGAAGCAAAACTTAAATTCCAATATCCCTAGAGAAGATCTGCTTGTATCGCCAGGGAAAGAGAACCAGATATTGAAGGATATCCAAGAAAGAAAATCAGTAGAAACTACTACTGGGAATCAAGCAAGGCTGGAAAAAAAGTTGATGCTCACAAGCAGCACGAAAAGGATGCCATTCCAATCACTACTTCCAGGCAAGAACATCAGATCAGAAGCTTCAGTCCCCGATGTAGCTACTAAAAGCAGCACATTTCTTGCTTGTAGTCGAACAAAGGAGAAGGTCAAGAATCCACTCTCTAATAAATTTGTTGGAGAAGGAAAGAGGGGCTGGACTATGGTTGCAGACACTAATACTCTCCTTCACAAGCAATCAAGGAAGTCATTGCAACTTCTACAAGGTCTTAAGGGGACTCATTTGATCATTCCAAGAATGGTTATACGGGAACTGGATTGCCTGAAACAGCGTGGCAGCCTGTTCAGAAAGAAAACAGAGGCTTGTTTGGTTCTGGAATGGATTGAAGAGTGTATGGTAAAAACAAATTGGTGGATCCATGTCCAGAGTTCACTGGAAGATGGAAGACTGATCGCTCCAACCCCTCCTGCTTCTCCACAGTCTCTATTTAGTGAGGACAGTTGGGGACTTACTTCTGGAACAACAAGCTCGTTTCCCTTCTTAAGATGGAGGAGTTCTATGGAACTTGTATCGCCAGCAGCAGAAGATCATATACTTGATTGTGCTCTTTTACATAGGAAGATGAGCAATGAGGGACAACTTGTTCTTCTAAGTAGTGACATCACCCTGAAGATCAAAGCCATGGCAGAGGGTTTGATTTGTGAGACAGCTCAAGAATTCCATGAGAGTCTAGTGAACCCGTCTTCTGAGAGGTTTATGTGGGCTGGTAGCTGTCCCCGTGGGCGTACTTGGTCCTACTTAGCTGACATAGTTTTGGCGGAGAAGTATAATCGCTGCCAACTGAAGAAGTCATCAAGGGGAGAAGGCGCAAAAGGTCTCAAGCTCATTTTGCTCCACAATTCTCAGTATGGACAGATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004540 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008995 GO:0009056 GO:0009057 GO:0009555 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016070 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019439 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0034641 GO:0034655 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0046483 GO:0046700 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA PIN_4

Protein Analysis

990

Amino Acids

110.06

Weight (kDa)

5.1

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	58 - 97	3.1e-07	FHA domain
PIN_4	PF13638	751 - 920	6.8e-20	PIN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34355 AT1G34355 AT1G34355
fragaria_vesca	FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232
malus_domestica	MD05G1040500.v1.1 MD10G1046600.v1.1
prunus_persica	Prupe.8G054200_v2.0.a1
pyrus_communis	pycom05g03310 pycom10g03280 pycom10g03290
rosa_chinensis	RchiOBHm_Chr6g0272171
rosa_laevigata	RLG00000013694
rosa_multiflora	Rmu_sc0005748.1_g000012
rosa_roxburghii	Rroxscaffold_7G00196530
rosa_rugosa	Rorug06G0066700
rosa_samantha	Rh6AG183500 Rh6BG183500 Rh6BG183600 Rh6CG184900 Rh6DG176600
rosa_wichuraiana	Rw6G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	390
Acc16I	TGCGCA	1 cut(s)	1083
Acc36I	ACCTGC	1 cut(s)	1612
AccB1I	GGYRCC	2 cut(s)	385, 1067
AccBSI	CCGCTC	1 cut(s)	1801
AccI	GTMKAC	1 cut(s)	1425
AciI	CCGC	6 cut(s)	119, 300, 589, 899, 1801, 2867
AclWI	GGATC	6 cut(s)	592, 877, 1455, 2458, 2471, 2959
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	7 cut(s)	325, 515, 868, 1526, 1933, 2219, 2765
AcuI	CTGAAG	6 cut(s)	642, 1575, 1812, 2118, 2738, 2912
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	2 cut(s)	770, 2836
AfiI	CCNNNNNNNGG	2 cut(s)	395, 1006
AflII	CTTAAG	3 cut(s)	65, 2318, 2590
AjiI	CACGTC	1 cut(s)	1328
AjnI	CCWGG	6 cut(s)	480, 816, 1090, 1278, 1969, 2107
AjuI	GAANNNNNNNTTGG	2 cut(s)	2088, 2120
AloI	GAACNNNNNNTCC	2 cut(s)	2676, 2708
Alw21I	GWGCWC	1 cut(s)	2656
Alw26I	GTCTC	4 cut(s)	896, 2535, 2747, 2930
AlwI	GGATC	6 cut(s)	592, 877, 1455, 2458, 2471, 2959
AlwNI	CAGNNNCTG	2 cut(s)	308, 1421
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	3 cut(s)	676, 705, 838
ApeKI	GCWGC	6 cut(s)	1079, 2073, 2160, 2385, 2627, 2883
ApoI	RAATTY	7 cut(s)	325, 515, 868, 1526, 1933, 2219, 2765
AseI	ATTAAT	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	1084, 2918
AspS9I	GGNCC	6 cut(s)	705, 851, 1166, 1746, 1857, 2841
AsuHPI	GGTGA	8 cut(s)	203, 268, 578, 665, 736, 1247, 1428, 2704
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	5 cut(s)	851, 1166, 1746, 1857, 2841
BalI	TGGCCA	1 cut(s)	678
BamHI	GGATCC	1 cut(s)	2463
BanI	GGYRCC	2 cut(s)	385, 1067
BanII	GRGCYC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	2625, 2657
BbsI	GAAGAC	4 cut(s)	639, 753, 2500, 2784
Bbv12I	GWGCWC	1 cut(s)	2656
BbvI	GCAGC	6 cut(s)	1066, 2085, 2172, 2397, 2639, 2870
BccI	CCATC	6 cut(s)	156, 610, 968, 1258, 2483, 2589
BcgI	CGANNNNNNTGC	2 cut(s)	2068, 2102
BciT130I	CCWGG	6 cut(s)	482, 818, 1092, 1280, 1971, 2109
BciVI	GTATCC	1 cut(s)	1375
BclI	TGATCA	2 cut(s)	1012, 2334
BcoDI	GTCTC	4 cut(s)	896, 2535, 2747, 2930
BfaI	CTAG	5 cut(s)	557, 1608, 1880, 1947, 2780
BfmI	CTRYAG	2 cut(s)	1422, 1503
BfrI	CTTAAG	3 cut(s)	65, 2318, 2590
BfuAI	ACCTGC	1 cut(s)	1612
BfuI	GTATCC	1 cut(s)	1375
BglII	AGATCT	2 cut(s)	1550, 1954
BisI	GCNGC	6 cut(s)	1080, 2074, 2161, 2386, 2628, 2884
BlsI	GCNGC	6 cut(s)	1081, 2075, 2162, 2387, 2629, 2885
Bme1390I	CCNGG	6 cut(s)	482, 818, 1092, 1280, 1971, 2109
Bme18I	GGWCC	5 cut(s)	851, 1166, 1746, 1857, 2841
BmeT110I	CYCGRG	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	1328
BmgT120I	GGNCC	6 cut(s)	705, 851, 1166, 1746, 1857, 2841
BmiI	GGNNCC	4 cut(s)	387, 1069, 1858, 2465
BmrFI	CCNGG	6 cut(s)	482, 818, 1092, 1280, 1971, 2109
BmrI	ACTGGG	3 cut(s)	44, 1862, 2040
BmsI	GCATC	2 cut(s)	2052, 2076
BmuI	ACTGGG	3 cut(s)	44, 1862, 2040
BoxI	GACNNNNGTC	1 cut(s)	1855
BpiI	GAAGAC	4 cut(s)	639, 753, 2500, 2784
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	1 cut(s)	1689
BpuEI	CTTGAG	3 cut(s)	68, 2745, 2912
BsaAI	YACGTR	1 cut(s)	772
BsaHI	GRCGYC	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	2930
BsaJI	CCNNGG	9 cut(s)	817, 1000, 1091, 1129, 1210, 1369, 1970, 2730, 2827
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	1687, 1717
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 1006
Bse1I	ACTGG	6 cut(s)	50, 766, 1857, 2035, 2367, 2487
Bse3DI	GCAATG	2 cut(s)	2297, 2683
BseBI	CCWGG	6 cut(s)	482, 818, 1092, 1280, 1971, 2109
BseDI	CCNNGG	9 cut(s)	817, 1000, 1091, 1129, 1210, 1369, 1970, 2730, 2827
BseGI	GGATG	6 cut(s)	872, 1187, 1355, 1789, 1910, 2091
BseLI	CCNNNNNNNGG	2 cut(s)	395, 1006
BseMI	GCAATG	2 cut(s)	2297, 2683
BseMII	CTCAG	6 cut(s)	531, 1467, 1538, 1733, 2787, 2966
BseNI	ACTGG	6 cut(s)	50, 766, 1857, 2035, 2367, 2487
BseRI	GAGGAG	6 cut(s)	247, 408, 411, 1387, 1811, 2614
BseXI	GCAGC	6 cut(s)	1066, 2085, 2172, 2397, 2639, 2870
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	1483
BshFI	GGCC	3 cut(s)	678, 707, 840
BshNI	GGYRCC	2 cut(s)	385, 1067
BsiHKAI	GWGCWC	1 cut(s)	2656
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	6 cut(s)	834, 2123, 2338, 2568, 2697, 2808
BslI	CCNNNNNNNGG	2 cut(s)	395, 1006
BsmAI	GTCTC	4 cut(s)	896, 2535, 2747, 2930
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	6 cut(s)	834, 2123, 2338, 2568, 2697, 2808
BsnI	GGCC	3 cut(s)	678, 707, 840
Bso31I	GGTCTC	1 cut(s)	2930
BsoBI	CYCGRG	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	42, 2656
Bsp19I	CCATGG	4 cut(s)	1000, 1129, 1369, 2730
BspACI	CCGC	6 cut(s)	119, 300, 589, 899, 1801, 2867
BspANI	GGCC	3 cut(s)	678, 707, 840
BspCNI	CTCAG	6 cut(s)	532, 1466, 1539, 1734, 2788, 2965
BspLI	GGNNCC	4 cut(s)	387, 1069, 1858, 2465
BspMAI	CTGCAG	1 cut(s)	1507
BspMI	ACCTGC	1 cut(s)	1612
BspPI	GGATC	6 cut(s)	592, 877, 1455, 2458, 2471, 2959
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	2 cut(s)	385, 1067
BspTI	CTTAAG	3 cut(s)	65, 2318, 2590
BspTNI	GGTCTC	1 cut(s)	2930
BsrBI	CCGCTC	1 cut(s)	1801
BsrDI	GCAATG	2 cut(s)	2297, 2683
BsrI	ACTGG	6 cut(s)	50, 766, 1857, 2035, 2367, 2487
BssECI	CCNNGG	9 cut(s)	817, 1000, 1091, 1129, 1210, 1369, 1970, 2730, 2827
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	5 cut(s)	1000, 1129, 1210, 1369, 2730
Bst2UI	CCWGG	6 cut(s)	482, 818, 1092, 1280, 1971, 2109
Bst4CI	ACNGT	5 cut(s)	25, 61, 1654, 2529, 2549
Bst6I	CTCTTC	7 cut(s)	30, 757, 1056, 1588, 1740, 1788, 2430
BstACI	GRCGYC	1 cut(s)	181
BstAFI	CTTAAG	3 cut(s)	65, 2318, 2590
BstBAI	YACGTR	1 cut(s)	772
BstC8I	GCNNGC	1 cut(s)	2625
BstDEI	CTNAG	9 cut(s)	540, 779, 1453, 1547, 1742, 2699, 2796, 2848, 2952
BstDSI	CCRYGG	5 cut(s)	1000, 1129, 1369, 2730, 2827
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstF5I	GGATG	6 cut(s)	872, 1187, 1355, 1789, 1910, 2091
BstHHI	GCGC	2 cut(s)	1084, 2918
BstMAI	GTCTC	4 cut(s)	896, 2535, 2747, 2930
BstMWI	GCNNNNNNNGC	4 cut(s)	1076, 1119, 1966, 2938
BstNI	CCWGG	6 cut(s)	482, 818, 1092, 1280, 1971, 2109
BstPAI	GACNNNNGTC	1 cut(s)	1855
BstSCI	CCNGG	6 cut(s)	480, 816, 1090, 1278, 1969, 2107
BstSFI	CTRYAG	2 cut(s)	1422, 1503
BstV1I	GCAGC	6 cut(s)	1066, 2085, 2172, 2397, 2639, 2870
BstV2I	GAAGAC	4 cut(s)	639, 753, 2500, 2784
BstX2I	RGATCY	6 cut(s)	597, 1447, 1550, 1954, 2463, 2964
BstYI	RGATCY	6 cut(s)	597, 1447, 1550, 1954, 2463, 2964
BsuI	GTATCC	1 cut(s)	1375
BsuRI	GGCC	3 cut(s)	678, 707, 840
BtgI	CCRYGG	5 cut(s)	1000, 1129, 1369, 2730, 2827
BtrI	CACGTC	1 cut(s)	1328
BtsCI	GGATG	6 cut(s)	872, 1187, 1355, 1789, 1910, 2091
BtsI	GCAGTG	1 cut(s)	1500
BtsIMutI	CAGTG	4 cut(s)	30, 57, 1500, 2480
BveI	ACCTGC	1 cut(s)	1612
Cac8I	GCNNGC	1 cut(s)	2625
CaiI	CAGNNNCTG	2 cut(s)	308, 1421
CfoI	GCGC	2 cut(s)	1084, 2918
Cfr13I	GGNCC	6 cut(s)	705, 851, 1166, 1746, 1857, 2841
CseI	GACGC	2 cut(s)	189, 208
CsiI	ACCWGGT	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	769, 2835
CviAII	CATG	7 cut(s)	647, 1001, 1130, 1370, 2468, 2731, 2771
CviQI	GTAC	2 cut(s)	769, 2835
DdeI	CTNAG	9 cut(s)	540, 779, 1453, 1547, 1742, 2699, 2796, 2848, 2952
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	7 cut(s)	30, 757, 1056, 1588, 1740, 1788, 2430
EarI	CTCTTC	7 cut(s)	30, 757, 1056, 1588, 1740, 1788, 2430
EciI	GGCGGA	2 cut(s)	604, 2882
Eco130I	CCWWGG	5 cut(s)	1000, 1129, 1210, 1369, 2730
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	2930
Eco32I	GATATC	2 cut(s)	832, 1999
Eco47I	GGWCC	5 cut(s)	851, 1166, 1746, 1857, 2841
Eco57I	CTGAAG	6 cut(s)	642, 1575, 1812, 2118, 2738, 2912
Eco88I	CYCGRG	1 cut(s)	390
EcoNI	CCTNNNNNAGG	1 cut(s)	393
EcoO109I	RGGNCCY	2 cut(s)	1746, 1857
EcoRI	GAATTC	3 cut(s)	868, 1526, 2765
EcoRII	CCWGG	6 cut(s)	480, 816, 1090, 1278, 1969, 2107
EcoRV	GATATC	2 cut(s)	832, 1999
EcoT14I	CCWWGG	5 cut(s)	1000, 1129, 1210, 1369, 2730
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	5 cut(s)	1000, 1129, 1210, 1369, 2730
Esp3I	CGTCTC	1 cut(s)	896
FaeI	CATG	7 cut(s)	650, 1004, 1133, 1373, 2471, 2734, 2774
FaqI	GGGAC	6 cut(s)	834, 2123, 2338, 2568, 2697, 2808
FatI	CATG	7 cut(s)	646, 1000, 1129, 1369, 2467, 2730, 2770
FauI	CCCGC	1 cut(s)	1794
FbaI	TGATCA	2 cut(s)	1012, 2334
FblI	GTMKAC	1 cut(s)	1425
Fnu4HI	GCNGC	6 cut(s)	1080, 2074, 2161, 2386, 2628, 2884
FokI	GGATG	6 cut(s)	859, 1174, 1342, 1796, 1897, 2098
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	6 cut(s)	1080, 2074, 2161, 2386, 2628, 2884
FspBI	CTAG	5 cut(s)	557, 1608, 1880, 1947, 2780
FspI	TGCGCA	1 cut(s)	1083
GlaI	GCGC	2 cut(s)	1083, 2917
GluI	GCNGC	6 cut(s)	1080, 2074, 2161, 2386, 2628, 2884
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	1689
HaeIII	GGCC	3 cut(s)	678, 707, 840
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	2 cut(s)	189, 208
HhaI	GCGC	2 cut(s)	1084, 2918
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	7 cut(s)	650, 1004, 1133, 1373, 2471, 2734, 2774
Hin6I	GCGC	2 cut(s)	1082, 2916
HinP1I	GCGC	2 cut(s)	1082, 2916
HincII	GTYRAC	4 cut(s)	103, 421, 1054, 1276
HindII	GTYRAC	4 cut(s)	103, 421, 1054, 1276
HindIII	AAGCTT	3 cut(s)	266, 697, 2130
HpaI	GTTAAC	1 cut(s)	1276
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	8 cut(s)	203, 268, 578, 665, 736, 1247, 1428, 2704
Hpy99I	CGWCG	2 cut(s)	11, 179
HpyAV	CCTTC	8 cut(s)	586, 1864, 1987, 2188, 2225, 2285, 2596, 2906
HpyCH4III	ACNGT	5 cut(s)	25, 61, 1654, 2529, 2549
HpyCH4IV	ACGT	2 cut(s)	771, 1327
HpyCH4V	TGCA	6 cut(s)	195, 775, 1500, 1505, 2258, 2302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1076, 1119, 1966, 2938
HpyF3I	CTNAG	9 cut(s)	540, 779, 1453, 1547, 1742, 2699, 2796, 2848, 2952
HpySE526I	ACGT	2 cut(s)	771, 1327
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	7 cut(s)	650, 1004, 1133, 1373, 2471, 2734, 2774
HspAI	GCGC	2 cut(s)	1082, 2916
Ksp22I	TGATCA	2 cut(s)	1012, 2334
KspAI	GTTAAC	1 cut(s)	1276
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	5 cut(s)	74, 1400, 1798, 2509, 2946
Lsp1109I	GCAGC	6 cut(s)	1066, 2085, 2172, 2397, 2639, 2870
LweI	GCATC	2 cut(s)	2052, 2076
MabI	ACCWGGT	1 cut(s)	480
MaeI	CTAG	5 cut(s)	557, 1608, 1880, 1947, 2780
MaeII	ACGT	2 cut(s)	771, 1327
MaeIII	GTNAC	4 cut(s)	787, 1174, 1411, 2705
MbiI	CCGCTC	1 cut(s)	1801
MfeI	CAATTG	2 cut(s)	501, 1016
MflI	RGATCY	6 cut(s)	597, 1447, 1550, 1954, 2463, 2964
MhlI	GDGCHC	2 cut(s)	42, 2656
MlsI	TGGCCA	1 cut(s)	678
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	7 cut(s)	202, 350, 743, 1421, 1477, 2320, 2785
MmeI	TCCRAC	3 cut(s)	157, 2206, 2531
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	9 cut(s)	66, 371, 966, 1275, 1776, 1886, 1931, 2319, 2591
MslI	CAYNNNNRTG	1 cut(s)	651
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	2 cut(s)	848, 1163
MspCI	CTTAAG	3 cut(s)	65, 2318, 2590
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	6 cut(s)	482, 818, 1092, 1280, 1971, 2109
MunI	CAATTG	2 cut(s)	501, 1016
MvaI	CCWGG	6 cut(s)	482, 818, 1092, 1280, 1971, 2109
MwoI	GCNNNNNNNGC	4 cut(s)	1076, 1119, 1966, 2938
NcoI	CCATGG	4 cut(s)	1000, 1129, 1369, 2730
NlaIII	CATG	7 cut(s)	650, 1004, 1133, 1373, 2471, 2734, 2774
NlaIV	GGNNCC	4 cut(s)	387, 1069, 1858, 2465
NmuCI	GTSAC	4 cut(s)	787, 1174, 1411, 2705
NsbI	TGCGCA	1 cut(s)	1083
PaeR7I	CTCGAG	1 cut(s)	390
PciSI	GCTCTTC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	92
PkrI	GCNGC	6 cut(s)	1081, 2075, 2162, 2387, 2629, 2885
PleI	GAGTC	7 cut(s)	202, 349, 743, 1421, 1477, 2320, 2784
PpsI	GAGTC	7 cut(s)	202, 349, 743, 1421, 1477, 2320, 2784
Ppu21I	YACGTR	1 cut(s)	772
PpuMI	RGGWCCY	2 cut(s)	1746, 1857
PshAI	GACNNNNGTC	1 cut(s)	1855
PshBI	ATTAAT	1 cut(s)	371
Psp5II	RGGWCCY	2 cut(s)	1746, 1857
Psp6I	CCWGG	6 cut(s)	480, 816, 1090, 1278, 1969, 2107
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	6 cut(s)	480, 816, 1090, 1278, 1969, 2107
PspN4I	GGNNCC	4 cut(s)	387, 1069, 1858, 2465
PspPI	GGNCC	6 cut(s)	705, 851, 1166, 1746, 1857, 2841
PspPPI	RGGWCCY	2 cut(s)	1746, 1857
PspXI	VCTCGAGB	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	1507
PstNI	CAGNNNCTG	2 cut(s)	308, 1421
PsuI	RGATCY	6 cut(s)	597, 1447, 1550, 1954, 2463, 2964
PvuII	CAGCTG	2 cut(s)	848, 1163
RsaI	GTAC	2 cut(s)	770, 2836
RsaNI	GTAC	2 cut(s)	769, 2835
RseI	CAYNNNNRTG	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	9 cut(s)	66, 371, 966, 1275, 1776, 1886, 1931, 2319, 2591
SatI	GCNGC	6 cut(s)	1080, 2074, 2161, 2386, 2628, 2884
Sau96I	GGNCC	6 cut(s)	705, 851, 1166, 1746, 1857, 2841
SchI	GAGTC	7 cut(s)	202, 350, 743, 1421, 1477, 2320, 2785
ScrFI	CCNGG	6 cut(s)	482, 818, 1092, 1280, 1971, 2109
SduI	GDGCHC	2 cut(s)	42, 2656
SexAI	ACCWGGT	1 cut(s)	480
SfaNI	GCATC	2 cut(s)	2052, 2076
SfcI	CTRYAG	2 cut(s)	1422, 1503
Sfr274I	CTCGAG	1 cut(s)	390
SinI	GGWCC	5 cut(s)	851, 1166, 1746, 1857, 2841
SlaI	CTCGAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	7 cut(s)	65, 83, 390, 2318, 2590, 2760, 2927
SmoI	CTYRAG	7 cut(s)	65, 83, 390, 2318, 2590, 2760, 2927
SsiI	CCGC	6 cut(s)	119, 300, 589, 899, 1801, 2867
SspI	AATATT	2 cut(s)	493, 1046
SspMI	CTAG	5 cut(s)	557, 1608, 1880, 1947, 2780
StyD4I	CCNGG	6 cut(s)	480, 816, 1090, 1278, 1969, 2107
StyI	CCWWGG	5 cut(s)	1000, 1129, 1210, 1369, 2730
TaaI	ACNGT	5 cut(s)	25, 61, 1654, 2529, 2549
TaiI	ACGT	2 cut(s)	774, 1330
TaqI	TCGA	4 cut(s)	391, 1565, 1849, 2182
TaqII	GACCGA	1 cut(s)	651
Tru1I	TTAA	9 cut(s)	66, 371, 966, 1275, 1776, 1886, 1931, 2319, 2591
Tru9I	TTAA	9 cut(s)	66, 371, 966, 1275, 1776, 1886, 1931, 2319, 2591
TscAI	CASTG	4 cut(s)	30, 57, 1507, 2487
TseFI	GTSAC	4 cut(s)	787, 1174, 1411, 2705
TseI	GCWGC	6 cut(s)	1079, 2073, 2160, 2385, 2627, 2883
Tsp45I	GTSAC	4 cut(s)	787, 1174, 1411, 2705
TspDTI	ATGAA	7 cut(s)	85, 338, 372, 861, 1314, 1335, 1695
TspGWI	ACGGA	3 cut(s)	87, 133, 1193
TspRI	CASTG	4 cut(s)	30, 57, 1507, 2487
Vha464I	CTTAAG	3 cut(s)	65, 2318, 2590
VpaK11BI	GGWCC	5 cut(s)	851, 1166, 1746, 1857, 2841
VspI	ATTAAT	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	393
XapI	RAATTY	7 cut(s)	325, 515, 868, 1526, 1933, 2219, 2765
XhoI	CTCGAG	1 cut(s)	390
XmiI	GTMKAC	1 cut(s)	1425
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	5 cut(s)	557, 1608, 1880, 1947, 2780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.