Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004743

Physical Location & Seq

Genomic Coordinates Forward (+)

3636565 .. 3637044

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATGGACCTTTTATCACCGTCCCCAGAAGACCATATCCTAGATTGTGCTCTTTTATATAGAAGGATGAAAAGGAACGATGGACAACTTGTCCTTCTCAGTAACGATGTTACCCTGAAGATCAAAGCCATGGAAGAGGGTTTGCTCTGTGAGACAGCTGAAGAATTTCGCGAGGGTCTGGTGAACCCACTTTCTGAGAGGTTTTTGTGGCCTGACAGTTCTCCCTGTGGGCGTACATGGTCTTACTTAGGAAACGGAGCTTTGAGAGAAAAGTACAATAGCTGCGGCCCTCTGAAGAAGTCGTCAAAAGGAGAAGGTGCAAAGGGTTTGAAGCTCATTCTACACCACAATGCTCATTACGGGCAGATCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004540 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008995 GO:0009056 GO:0009057 GO:0009555 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016070 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019439 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0034641 GO:0034655 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0046483 GO:0046700 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA PIN_4

Protein Analysis

125

Amino Acids

13.97

Weight (kDa)

7.69

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIN_4	PF13638	8 - 53	1.3e-08	PIN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34355 AT1G34355 AT1G34355
fragaria_vesca	FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232
malus_domestica	MD05G1040500.v1.1 MD10G1046600.v1.1
prunus_persica	Prupe.8G054200_v2.0.a1
pyrus_communis	pycom05g03310 pycom10g03280 pycom10g03290
rosa_chinensis	RchiOBHm_Chr6g0272171
rosa_laevigata	RLG00000013694
rosa_multiflora	Rmu_sc0005748.1_g000012
rosa_roxburghii	Rroxscaffold_7G00196530
rosa_rugosa	Rorug06G0066700
rosa_samantha	Rh6AG183500 Rh6BG183500 Rh6BG183600 Rh6CG184900 Rh6DG176600
rosa_wichuraiana	Rw6G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	171
AciI	CCGC	1 cut(s)	285
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	3 cut(s)	137, 180, 314
AfaI	GTAC	2 cut(s)	235, 275
AgsI	TTSAA	1 cut(s)	331
AhdI	GACNNNNNGTC	1 cut(s)	89
AluBI	AGCT	4 cut(s)	158, 260, 282, 334
AluI	AGCT	4 cut(s)	158, 260, 282, 334
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	361
AoxI	GGCC	2 cut(s)	209, 286
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	7, 287
AsuHPI	GGTGA	2 cut(s)	9, 193
AvaII	GGWCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	2 cut(s)	283, 286
BlsI	GCNGC	2 cut(s)	284, 287
Bme18I	GGWCC	1 cut(s)	7
BmeRI	GACNNNNNGTC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	7, 287
BpiI	GAAGAC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	112, 186
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	211, 288
BsiHKAI	GWGCWC	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	7
BsnI	GGCC	2 cut(s)	211, 288
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	120, 366
Bsp19I	CCATGG	1 cut(s)	129
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	2 cut(s)	211, 288
BspCNI	CTCAG	2 cut(s)	111, 187
BspFNI	CGCG	1 cut(s)	171
BspPI	GGATC	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	120, 366
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	21, 218
Bst6I	CTCTTC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	98, 195, 247
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	2 cut(s)	123, 369
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	120, 366
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	211, 288
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	72
BtuMI	TCGCGA	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	7, 287
Csp6I	GTAC	2 cut(s)	234, 274
CviAII	CATG	2 cut(s)	130, 237
CviJI	RGCY	7 cut(s)	128, 158, 211, 260, 282, 288, 334
CviKI_1	RGCY	7 cut(s)	128, 158, 211, 260, 282, 288, 334
CviQI	GTAC	2 cut(s)	234, 274
DdeI	CTNAG	3 cut(s)	98, 195, 247
DpnI	GATC	2 cut(s)	122, 368
DpnII	GATC	2 cut(s)	120, 366
DriI	GACNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	129
Eam1105I	GACNNNNNGTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	3 cut(s)	137, 180, 314
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	133, 240
FaiI	YATR	5 cut(s)	36, 58, 60, 131, 238
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	2 cut(s)	129, 236
Fnu4HI	GCNGC	2 cut(s)	283, 286
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	283, 286
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	2 cut(s)	283, 286
HaeIII	GGCC	2 cut(s)	211, 288
Hin1II	CATG	2 cut(s)	133, 240
HphI	GGTGA	2 cut(s)	9, 193
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	196, 294
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	3 cut(s)	57, 104, 308
HpyCH4III	ACNGT	2 cut(s)	21, 218
HpyCH4V	TGCA	1 cut(s)	320
HpyF3I	CTNAG	3 cut(s)	98, 195, 247
Hsp92II	CATG	2 cut(s)	133, 240
Kzo9I	GATC	2 cut(s)	120, 366
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	5 cut(s)	39, 128, 164, 225, 238
Lsp1109I	GCAGC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	101, 109
MalI	GATC	2 cut(s)	122, 368
MboI	GATC	2 cut(s)	120, 366
MboII	GAAGA	5 cut(s)	41, 130, 146, 173, 307
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	1 cut(s)	164
MnlI	CCTC	4 cut(s)	130, 166, 192, 300
MroXI	GAANNNNTTC	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	120, 366
NlaIII	CATG	2 cut(s)	133, 240
NruI	TCGCGA	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	284, 287
PspPI	GGNCC	2 cut(s)	7, 287
PsuI	RGATCY	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	158
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	2 cut(s)	235, 275
RsaNI	GTAC	2 cut(s)	234, 274
RseI	CAYNNNNRTG	1 cut(s)	348
SatI	GCNGC	2 cut(s)	283, 286
Sau3AI	GATC	2 cut(s)	120, 366
Sau96I	GGNCC	2 cut(s)	7, 287
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	7 cut(s)	12, 160, 203, 262, 284, 319, 336
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	21, 218
TasI	AATT	1 cut(s)	164
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	288
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	2 cut(s)	270, 359
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.