Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Reverse (-)

12552655 .. 12554363

Gene Structure 1709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G34380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATAACAGTAGGATTTATTCAACCCAATTCTCTCTTCTCCTTCTCAACTAAATCCATCGACAAGACACAACCTTCACGAACGAAATGGGTCTCTTCCTCGTCCTCTTCCTTTTCTTCTCACTCTTCCGTTGAGACATTTCATCGAACAGGTAATGTGCAAGTTCTTCAGAAAGATGTTCTCTGTGGCAACAATGAAGAAATTAGGAAGAAGAATAAAAGGGTATTCTTCTTAGACGTTAGTCCACTTTGCTACGAAGGAAACAAACCCAGTTCGCAAGCTTTTGGTCACTGGATTTCACTCTTCTTCTCTCAAGTCAGCCTCACTGATCCTGTCATAGCTGTTATCGATGGAGAAGAAGGTAACCAACGACGCAGAGAATTGTTGCCTTCATATAAAGCTCATAGGAAATCACCAAATCATGGGAGATACTCTAAGAGGCCACATCAGTTTGTTGATGAAGTTCTTAGAAAATGCAATGTGCCAGTTGTTAGAATAGAAGGGCATGAAGCAGACGATGTAGTAGCTACGCTAATGGAACAAGCTGTGCAAAGAGGATATCGTGCGGTTATTGCATCGCCTGATAAAGACTTTAAGCAGTTGATCTCAGAAAATGTTCAGATTGTCATTCCATTGGCAGATCTCAGAAGATGGTCCTTTTATACTTTGAAGCACTACCATGCTCAATATAATTGTGATCCACAGTCTGATTTGAGCTTTCGTAAGTGCCTAAATCGACTTATGGCTACAAACATGTCTCTTGACGCTTGTCTTTCTGTCAACTTTCTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

264

Amino Acids

30.13

Weight (kDa)

9.15

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5_3_exonuc_N	PF02739	103 - 215	7.1e-23	5'-3' exonuclease, N-terminal resolvase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	422
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	2 cut(s)	323, 692
AcuI	CTGAAG	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	753
AgsI	TTSAA	2 cut(s)	23, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	6 cut(s)	281, 341, 401, 527, 545, 717
AluI	AGCT	6 cut(s)	281, 341, 401, 527, 545, 717
Alw26I	GTCTC	3 cut(s)	97, 128, 762
AlwI	GGATC	2 cut(s)	323, 692
AoxI	GGCC	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	654
AsuHPI	GGTGA	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	654
BccI	CCATC	3 cut(s)	65, 344, 645
BcoDI	GTCTC	3 cut(s)	97, 128, 762
BglII	AGATCT	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	654
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	584
BmuI	ACTGGG	1 cut(s)	264
BoxI	GACNNNNGTC	2 cut(s)	240, 768
BpuEI	CTTGAG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	3 cut(s)	270, 296, 485
Bse3DI	GCAATG	1 cut(s)	484
BseCI	ATCGAT	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	621, 658
BseNI	ACTGG	3 cut(s)	270, 296, 485
BshFI	GGCC	1 cut(s)	442
BshVI	ATCGAT	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	3 cut(s)	97, 128, 762
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	328, 603, 640, 697
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	620, 657
BspDI	ATCGAT	1 cut(s)	348
BspPI	GGATC	2 cut(s)	323, 692
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	484
BsrI	ACTGG	3 cut(s)	270, 296, 485
BssMI	GATC	4 cut(s)	328, 603, 640, 697
Bst4CI	ACNGT	2 cut(s)	10, 705
Bst6I	CTCTTC	5 cut(s)	41, 100, 112, 130, 308
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	5 cut(s)	232, 435, 467, 607, 644
BstEII	GGTNACC	1 cut(s)	362
BstKTI	GATC	4 cut(s)	331, 606, 643, 700
BstMAI	GTCTC	3 cut(s)	97, 128, 762
BstMBI	GATC	4 cut(s)	328, 603, 640, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	757
BstPAI	GACNNNNGTC	2 cut(s)	240, 768
BstPI	GGTNACC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	442
BsuTUI	ATCGAT	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	289, 324
Cac8I	GCNNGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	654
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	2 cut(s)	381, 773
CviAII	CATG	4 cut(s)	422, 506, 680, 754
CviJI	RGCY	9 cut(s)	281, 321, 341, 401, 442, 527, 545, 717, 746
CviKI_1	RGCY	9 cut(s)	281, 321, 341, 401, 442, 527, 545, 717, 746
DdeI	CTNAG	5 cut(s)	232, 435, 467, 607, 644
DpnI	GATC	4 cut(s)	330, 605, 642, 699
DpnII	GATC	4 cut(s)	328, 603, 640, 697
Eam1104I	CTCTTC	5 cut(s)	41, 100, 112, 130, 308
EarI	CTCTTC	5 cut(s)	41, 100, 112, 130, 308
Eco31I	GGTCTC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	152
Eco91I	GGTNACC	1 cut(s)	362
EcoO65I	GGTNACC	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	560
FaeI	CATG	4 cut(s)	425, 509, 683, 757
FatI	CATG	4 cut(s)	421, 505, 679, 753
HaeIII	GGCC	1 cut(s)	442
HgaI	GACGC	2 cut(s)	381, 773
Hin1II	CATG	4 cut(s)	425, 509, 683, 757
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	279
HphI	GGTGA	1 cut(s)	405
Hpy166II	GTNNAC	2 cut(s)	245, 781
Hpy188I	TCNGA	5 cut(s)	171, 610, 621, 647, 709
Hpy188III	TCNNGA	2 cut(s)	78, 761
Hpy8I	GTNNAC	2 cut(s)	245, 781
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	6 cut(s)	52, 84, 251, 353, 399, 494
HpyCH4III	ACNGT	2 cut(s)	10, 705
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	160, 477, 550, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	5 cut(s)	232, 435, 467, 607, 644
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	425, 509, 683, 757
Kzo9I	GATC	4 cut(s)	328, 603, 640, 697
LpnPI	CCDG	6 cut(s)	135, 277, 283, 345, 498, 594
LweI	GCATC	1 cut(s)	584
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	287, 362
MalI	GATC	4 cut(s)	330, 605, 642, 699
MboI	GATC	4 cut(s)	328, 603, 640, 697
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	4 cut(s)	28, 201, 380, 691
MnlI	CCTC	5 cut(s)	109, 115, 332, 432, 548
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	2 cut(s)	594, 793
MslI	CAYNNNNRTG	1 cut(s)	678
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeII	GATC	4 cut(s)	328, 603, 640, 697
NlaIII	CATG	4 cut(s)	425, 509, 683, 757
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	757
PciI	ACATGT	1 cut(s)	753
PdmI	GAANNNNTTC	1 cut(s)	615
PflMI	CCANNNNNTGG	1 cut(s)	422
PscI	ACATGT	1 cut(s)	753
PshAI	GACNNNNGTC	2 cut(s)	240, 768
PspEI	GGTNACC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	654
PsuI	RGATCY	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	678
SaqAI	TTAA	2 cut(s)	594, 793
Sau3AI	GATC	4 cut(s)	328, 603, 640, 697
Sau96I	GGNCC	1 cut(s)	654
SfaNI	GCATC	1 cut(s)	584
SinI	GGWCC	1 cut(s)	654
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	4 cut(s)	28, 201, 380, 691
SsiI	CCGC	1 cut(s)	566
TaaI	ACNGT	2 cut(s)	10, 705
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	4 cut(s)	60, 145, 348, 736
TasI	AATT	4 cut(s)	28, 201, 380, 691
Tru1I	TTAA	2 cut(s)	594, 793
Tru9I	TTAA	2 cut(s)	594, 793
TscAI	CASTG	2 cut(s)	296, 331
TseFI	GTSAC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	5 cut(s)	131, 210, 381, 474, 522
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	296, 331
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	654
XceI	RCATGY	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.