Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Reverse (-)

33832247 .. 33835932

Gene Structure 3686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG183900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGTAGAAGTTTCAGTTGCCACCCGCGTTCAAATCAAACCCTTTGTTTCTGCAAGCCCGCATCTTCCAATTTGTCGCAAAATAACATGGAAAATTTGTGGAGCTGTGGCATCATCTGATTCCTCATCTTCTTCTAGTTGTGGGTGTAGCAGGTATGATAAACAAACGATAGATGATGGACAAGTAGTATTGCCAATGAAGAAGAAGAAGAAGAAGAAGAGAAGGAGGGTGTTCTTTCTAGATGTTAATCCTCTCTGTTATGCTGGAAGTAAACCCAGCTTACACTCTTTTGCTCGCTGGGTTTCCTTGTTTTTTAAGCAAGTTAGCCTCTCGGATCCTGTTATCGCTGTTGTTGATGGTGAAAGAGGGAGCGAGCTCCGCCGGCAGTTGCTACCTTCATATAAAACGCACAGGTGGAGGTTGTTAAGACAGTTTTCAAGGGGTCATGTTGGAAGGTCACACGGAGTCATCAAAGATGTGTTTACAAAATGCAATGTGCCTGTCATAAAAATGGATGGCCATGAAGCGGATGATGTTATAGCTACTCTTGCGGAACAAGTTCTACAAATAGGATATCAAGTGGTGATTGCGTCTCCTGATAAAGATTTTAAGCAATTGCTTTCAGAAGATGTCCAAATCGTAATGCCCCTGGACGATTTAAAGCGCTGGTCCTTTTACACCCTTAAGCACTACATGGCTCAGTATAATTGTGATCCGTGCTGTGATTTGAGCCTCAGATGCATTATGGGAGATCAAGCTGATGGTGTTCCTGGGATCCAACATCTGGCTCCTGGGTTTGGTCAGAAGACTGCCCTAAAGCTCTTGAAAAAACATGGCTCATTGGAAAATTTACTAAACATAGCTTCAGTAAGAACTGTGGGCAGACAGTATGCGCAAGATGCTCTTACAAAGTATGCAGATTATCTACGAAGGAACTATGAGATTCTTTCCCTTAGAAGGGATGTCAATGTTCAACTTAAAGAGGAGTGGCTTGTTCCAAGAGACACAGGCAATGATTCAAAAACTTTGTCAAACTTCTTTAAATTCTTGGAAGAAACCGAGAAGTTCAGTCATCAAAGTGGATCTATTTCAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

366

Amino Acids

41.4

Weight (kDa)

9.38

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5_3_exonuc_N	PF02739	95 - 228	5.2e-22	5'-3' exonuclease, N-terminal resolvase-like domain
5_3_exonuc	PF01367	247 - 330	7.9e-14	5'-3' exonuclease, C-terminal SAM fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	894
Acc36I	ACCTGC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccII	CGCG	1 cut(s)	27
AciI	CCGC	5 cut(s)	25, 59, 379, 527, 551
AclWI	GGATC	6 cut(s)	329, 342, 707, 769, 782, 1090
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	3 cut(s)	93, 847, 1043
AcuI	CTGAAG	1 cut(s)	849
AfeI	AGCGCT	1 cut(s)	665
AfiI	CCNNNNNNNGG	5 cut(s)	526, 784, 797, 957, 958
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	6 cut(s)	32, 438, 826, 974, 1020, 1092
AjnI	CCWGG	3 cut(s)	648, 769, 790
AluBI	AGCT	7 cut(s)	104, 279, 376, 542, 758, 820, 863
AluI	AGCT	7 cut(s)	104, 279, 376, 542, 758, 820, 863
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	597, 996
AlwI	GGATC	6 cut(s)	329, 342, 707, 769, 782, 1090
Aor51HI	AGCGCT	1 cut(s)	665
AoxI	GGCC	1 cut(s)	517
ApoI	RAATTY	3 cut(s)	93, 847, 1043
ArsI	GACNNNNNNTTYG	2 cut(s)	1013, 1045
Asp700I	GAANNNNTTC	1 cut(s)	558
AspLEI	GCGC	2 cut(s)	666, 895
AspS9I	GGNCC	1 cut(s)	669
AsuHPI	GGTGA	2 cut(s)	371, 595
AvaII	GGWCC	1 cut(s)	669
BalI	TGGCCA	1 cut(s)	519
BamHI	GGATCC	2 cut(s)	334, 774
BanII	GRGCYC	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	1 cut(s)	378
BccI	CCATC	4 cut(s)	170, 350, 509, 755
BciT130I	CCWGG	3 cut(s)	650, 771, 792
BcoDI	GTCTC	2 cut(s)	597, 996
BfaI	CTAG	2 cut(s)	135, 239
BfoI	RGCGCY	1 cut(s)	667
BfrI	CTTAAG	1 cut(s)	683
BfuAI	ACCTGC	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	650, 771, 792
Bme18I	GGWCC	1 cut(s)	669
BmgT120I	GGNCC	1 cut(s)	669
BmiI	GGNNCC	3 cut(s)	336, 776, 789
BmrFI	CCNGG	3 cut(s)	650, 771, 792
BmsI	GCATC	4 cut(s)	70, 119, 728, 889
BpiI	GAAGAC	1 cut(s)	812
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	648, 770, 791
Bsc4I	CCNNNNNNNGG	5 cut(s)	526, 784, 797, 957, 958
Bse118I	RCCGGY	1 cut(s)	381
Bse3DI	GCAATG	2 cut(s)	499, 1018
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	650, 771, 792
BseDI	CCNNGG	3 cut(s)	648, 770, 791
BseGI	GGATG	3 cut(s)	520, 535, 967
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	5 cut(s)	526, 784, 797, 957, 958
BseMI	GCAATG	2 cut(s)	499, 1018
BseMII	CTCAG	2 cut(s)	713, 748
BseRI	GAGGAG	1 cut(s)	998
BseYI	CCCAGC	2 cut(s)	275, 297
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	5 cut(s)	526, 784, 797, 957, 958
BsmAI	GTCTC	2 cut(s)	597, 996
BsmBI	CGTCTC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	5 cut(s)	334, 712, 751, 774, 1082
BspACI	CCGC	5 cut(s)	25, 59, 379, 527, 551
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	2 cut(s)	712, 747
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	336, 776, 789
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	6 cut(s)	329, 342, 707, 769, 782, 1090
BspTI	CTTAAG	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	499, 1018
BsrFI	RCCGGY	1 cut(s)	381
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	3 cut(s)	648, 770, 791
BssMI	GATC	5 cut(s)	334, 712, 751, 774, 1082
Bst2UI	CCWGG	3 cut(s)	650, 771, 792
Bst4CI	ACNGT	3 cut(s)	432, 877, 888
Bst6I	CTCTTC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	683
BstC8I	GCNNGC	5 cut(s)	55, 59, 295, 374, 383
BstDEI	CTNAG	3 cut(s)	699, 734, 953
BstF5I	GGATG	3 cut(s)	520, 535, 967
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	667
BstHHI	GCGC	2 cut(s)	666, 895
BstKTI	GATC	5 cut(s)	337, 715, 754, 777, 1085
BstMAI	GTCTC	2 cut(s)	597, 996
BstMBI	GATC	5 cut(s)	334, 712, 751, 774, 1082
BstMWI	GCNNNNNNNGC	5 cut(s)	378, 382, 548, 738, 899
BstNI	CCWGG	3 cut(s)	650, 771, 792
BstSCI	CCNGG	3 cut(s)	648, 769, 790
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	3 cut(s)	334, 774, 1082
BstYI	RGATCY	3 cut(s)	334, 774, 1082
BsuRI	GGCC	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	520, 535, 967
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	5 cut(s)	55, 59, 295, 374, 383
CfoI	GCGC	2 cut(s)	666, 895
Cfr10I	RCCGGY	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	669
CseI	GACGC	1 cut(s)	579
CviAII	CATG	5 cut(s)	87, 446, 521, 694, 833
DdeI	CTNAG	3 cut(s)	699, 734, 953
DpnI	GATC	5 cut(s)	336, 714, 753, 776, 1084
DpnII	GATC	5 cut(s)	334, 712, 751, 774, 1082
DraI	TTTAAA	2 cut(s)	660, 1042
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EciI	GGCGGA	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	669
Eco47III	AGCGCT	1 cut(s)	665
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	849
EcoICRI	GAGCTC	1 cut(s)	376
EcoRII	CCWGG	3 cut(s)	648, 769, 790
EcoRV	GATATC	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	743
EcoT38I	GRGCYC	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	597
FaeI	CATG	5 cut(s)	90, 449, 524, 697, 836
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FatI	CATG	5 cut(s)	86, 445, 520, 693, 832
FauI	CCCGC	2 cut(s)	32, 66
FokI	GGATG	3 cut(s)	527, 542, 974
FriOI	GRGCYC	1 cut(s)	378
FspBI	CTAG	2 cut(s)	135, 239
FspI	TGCGCA	1 cut(s)	894
GlaI	GCGC	2 cut(s)	665, 894
GsaI	CCCAGC	2 cut(s)	279, 301
HaeII	RGCGCY	1 cut(s)	667
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	1 cut(s)	382
HgaI	GACGC	1 cut(s)	579
HhaI	GCGC	2 cut(s)	666, 895
Hin1II	CATG	5 cut(s)	90, 449, 524, 697, 836
Hin6I	GCGC	2 cut(s)	664, 893
HinP1I	GCGC	2 cut(s)	664, 893
HinfI	GANTC	4 cut(s)	119, 465, 943, 1016
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	371, 595
Hpy166II	GTNNAC	2 cut(s)	272, 483
Hpy188I	TCNGA	5 cut(s)	118, 334, 625, 737, 804
Hpy188III	TCNNGA	3 cut(s)	239, 596, 823
Hpy8I	GTNNAC	2 cut(s)	272, 483
HpyAV	CCTTC	5 cut(s)	216, 405, 447, 924, 951
HpyCH4III	ACNGT	3 cut(s)	432, 877, 888
HpyCH4V	TGCA	4 cut(s)	53, 492, 741, 917
HpyF10VI	GCNNNNNNNGC	5 cut(s)	378, 382, 548, 738, 899
HpyF3I	CTNAG	3 cut(s)	699, 734, 953
Hsp92II	CATG	5 cut(s)	90, 449, 524, 697, 836
HspAI	GCGC	2 cut(s)	664, 893
KroI	GCCGGC	1 cut(s)	381
KroNI	GCCGGC	1 cut(s)	383
Kzo9I	GATC	5 cut(s)	334, 712, 751, 774, 1082
LmnI	GCTCC	4 cut(s)	101, 369, 381, 793
LweI	GCATC	4 cut(s)	70, 119, 728, 889
MaeI	CTAG	2 cut(s)	135, 239
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	5 cut(s)	336, 714, 753, 776, 1084
MboI	GATC	5 cut(s)	334, 712, 751, 774, 1082
MfeI	CAATTG	1 cut(s)	614
MflI	RGATCY	3 cut(s)	334, 774, 1082
MhlI	GDGCHC	1 cut(s)	378
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	6 cut(s)	69, 93, 614, 706, 847, 1043
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	1 cut(s)	474
MmeI	TCCRAC	2 cut(s)	430, 802
MnlI	CCTC	8 cut(s)	133, 219, 261, 338, 359, 411, 743, 976
Mox20I	TGGCCA	1 cut(s)	519
Mph1103I	ATGCAT	1 cut(s)	743
MroNI	GCCGGC	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	8 cut(s)	246, 315, 425, 609, 659, 684, 978, 1041
MslI	CAYNNNNRTG	2 cut(s)	509, 1077
Msp20I	TGGCCA	1 cut(s)	519
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	3 cut(s)	650, 771, 792
MunI	CAATTG	1 cut(s)	614
MvaI	CCWGG	3 cut(s)	650, 771, 792
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	378, 382, 548, 738, 899
NaeI	GCCGGC	1 cut(s)	383
NdeII	GATC	5 cut(s)	334, 712, 751, 774, 1082
NgoMIV	GCCGGC	1 cut(s)	381
NlaIII	CATG	5 cut(s)	90, 449, 524, 697, 836
NlaIV	GGNNCC	3 cut(s)	336, 776, 789
NmuCI	GTSAC	1 cut(s)	456
NsbI	TGCGCA	1 cut(s)	894
NsiI	ATGCAT	1 cut(s)	743
PdiI	GCCGGC	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	119, 943, 1016
PflMI	CCANNNNNTGG	1 cut(s)	784
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	3 cut(s)	648, 769, 790
PspFI	CCCAGC	2 cut(s)	275, 297
PspGI	CCWGG	3 cut(s)	648, 769, 790
PspN4I	GGNNCC	3 cut(s)	336, 776, 789
PspPI	GGNCC	1 cut(s)	669
PsrI	GAACNNNNNNTAC	2 cut(s)	546, 578
PsuI	RGATCY	3 cut(s)	334, 774, 1082
RseI	CAYNNNNRTG	2 cut(s)	509, 1077
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	8 cut(s)	246, 315, 425, 609, 659, 684, 978, 1041
Sau3AI	GATC	5 cut(s)	334, 712, 751, 774, 1082
Sau96I	GGNCC	1 cut(s)	669
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	3 cut(s)	650, 771, 792
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	4 cut(s)	70, 119, 728, 889
SinI	GGWCC	1 cut(s)	669
SmiMI	CAYNNNNRTG	2 cut(s)	509, 1077
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	6 cut(s)	69, 93, 614, 706, 847, 1043
SsiI	CCGC	5 cut(s)	25, 59, 379, 527, 551
SspMI	CTAG	2 cut(s)	135, 239
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	3 cut(s)	648, 769, 790
TaaI	ACNGT	3 cut(s)	432, 877, 888
TasI	AATT	6 cut(s)	69, 93, 614, 706, 847, 1043
TfiI	GAWTC	3 cut(s)	119, 943, 1016
Tru1I	TTAA	8 cut(s)	246, 315, 425, 609, 659, 684, 978, 1041
Tru9I	TTAA	8 cut(s)	246, 315, 425, 609, 659, 684, 978, 1041
TseFI	GTSAC	1 cut(s)	456
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	3 cut(s)	212, 387, 537
TspGWI	ACGGA	2 cut(s)	477, 705
Van91I	CCANNNNNTGG	1 cut(s)	784
Vha464I	CTTAAG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	669
XapI	RAATTY	3 cut(s)	93, 847, 1043
XbaI	TCTAGA	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	2 cut(s)	135, 239
Zsp2I	ATGCAT	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.