Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Reverse (-)

36091341 .. 36094756

Gene Structure 3416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013698

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGTAGAAGTTTCAGTTGCCACCCGCGTTCAAGTCAAACCCTTTGTTTCTGCAAGCCCGCATCTTCCAATTTGTCGCAAAATAACATGGAAAATTTGTGGAGCTGTGGCATCATCTGATTCCTCATCTTCTTCTAGTTGTGGGTATAGCAGGTATGATAAACAAACGATAGATGATGGACAAGTAGCATTGCCAAAGAAGAAGAAGAAGAAGAGAAGGAGGGTGTTCTTTCTAGATGTTAATCCTCTCTGTTATGCTGGAAGTAAACCCAGCTTACACTCTTTTGCTCGCTGGGTTTCCTTGTTTTTTAAGCAAGTTAGCCTCTCTGATCCTGTTATCGCTGTTGTTGATGGTGAAAGAGGAAGCGAGCACCGCCGGCAGTTGCTACCTTCATATAAAACACACAGGTGGAAGTTGTTAAGACAGTTTTCAAGGGGTCATGTTGGAAGGTCACACGGAGTCATCAACGATGTTTTTACAAAATGCAATGTGCCTGTCATAAAAATAGATGGCCATGAAGCGGATGATGTTATAGCTACTCTTGCGGACCAAGTTCTACAAATAGGATATCAAGTGGTGATTGCGTCTCCTGATAAAGATTTTAAGCAATTGCTTTCAGAAGATGTCCAAATCGTTATGCCCCTGGACGATTTAAAGCGCTGGTCCTTTTACACCCTTAAGCACTACATGGCTCAGTATAATTGTGATCCGTGCTGTGATTTGAGCCTCAGATGCATTATGGGAGATCAAGCTGATGGTGTTCCTGGGATCCAACATCTGGCTCCTGGGTTTGACAGTATGCGCAAGATGCTCTTACAAAGTATGCGGATTACCTACGAAGGAACTATGAGATTCTTTCCCTTAGAAGGGATGTCAATGTTCAACTTAAAGAGGAGTGGCTTGTTCCAAGAGACACAAGCAATGATTCAAAAACTTTGTCAAACTTCTTTAAATTCTTGGAAGAAACCGAGAAATTCAGTCATCAAAATGGATCTATTTCGAATGGCTAAGTTGATAGGTTTTCTTTTGCGGTGGCGAATAGAATCTTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

352

Amino Acids

40.01

Weight (kDa)

9.62

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5_3_exonuc_N	PF02739	93 - 226	1.4e-21	5'-3' exonuclease, N-terminal resolvase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	803
Acc36I	ACCTGC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	778
AccII	CGCG	1 cut(s)	27
AciI	CCGC	7 cut(s)	25, 59, 373, 521, 545, 826, 1030
AclWI	GGATC	5 cut(s)	323, 701, 763, 776, 999
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	3 cut(s)	93, 952, 973
AfeI	AGCGCT	1 cut(s)	659
AfiI	CCNNNNNNNGG	4 cut(s)	520, 778, 866, 867
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	4 cut(s)	32, 432, 883, 929
AjnI	CCWGG	3 cut(s)	642, 763, 784
AleI	CACNNNNGTG	1 cut(s)	406
AluBI	AGCT	4 cut(s)	104, 273, 536, 752
AluI	AGCT	4 cut(s)	104, 273, 536, 752
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	591, 905
AlwI	GGATC	5 cut(s)	323, 701, 763, 776, 999
Aor51HI	AGCGCT	1 cut(s)	659
AoxI	GGCC	1 cut(s)	511
ApoI	RAATTY	3 cut(s)	93, 952, 973
ArsI	GACNNNNNNTTYG	2 cut(s)	922, 954
AspLEI	GCGC	2 cut(s)	660, 804
AspS9I	GGNCC	2 cut(s)	547, 663
AsuHPI	GGTGA	2 cut(s)	365, 589
AsuII	TTCGAA	1 cut(s)	1000
AvaII	GGWCC	2 cut(s)	547, 663
BalI	TGGCCA	1 cut(s)	513
BamHI	GGATCC	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	372
BccI	CCATC	4 cut(s)	170, 344, 503, 749
BciT130I	CCWGG	3 cut(s)	644, 765, 786
BcoDI	GTCTC	2 cut(s)	591, 905
BfaI	CTAG	2 cut(s)	135, 233
BfoI	RGCGCY	1 cut(s)	661
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	644, 765, 786
Bme18I	GGWCC	2 cut(s)	547, 663
BmgT120I	GGNCC	2 cut(s)	547, 663
BmiI	GGNNCC	2 cut(s)	770, 783
BmrFI	CCNGG	3 cut(s)	644, 765, 786
BmsI	GCATC	4 cut(s)	70, 119, 722, 798
Bpu14I	TTCGAA	1 cut(s)	1000
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	642, 764, 785
Bsc4I	CCNNNNNNNGG	4 cut(s)	520, 778, 866, 867
Bse118I	RCCGGY	1 cut(s)	375
Bse3DI	GCAATG	3 cut(s)	188, 493, 927
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	3 cut(s)	644, 765, 786
BseDI	CCNNGG	3 cut(s)	642, 764, 785
BseGI	GGATG	2 cut(s)	529, 876
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	4 cut(s)	520, 778, 866, 867
BseMI	GCAATG	3 cut(s)	188, 493, 927
BseMII	CTCAG	2 cut(s)	707, 742
BseRI	GAGGAG	1 cut(s)	907
BseYI	CCCAGC	2 cut(s)	269, 291
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	4 cut(s)	520, 778, 866, 867
BsmAI	GTCTC	2 cut(s)	591, 905
BsmBI	CGTCTC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	513
Bsp119I	TTCGAA	1 cut(s)	1000
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	5 cut(s)	328, 706, 745, 768, 991
BspACI	CCGC	7 cut(s)	25, 59, 373, 521, 545, 826, 1030
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	2 cut(s)	706, 741
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	770, 783
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	5 cut(s)	323, 701, 763, 776, 999
BspT104I	TTCGAA	1 cut(s)	1000
BspTI	CTTAAG	1 cut(s)	677
BsrDI	GCAATG	3 cut(s)	188, 493, 927
BsrFI	RCCGGY	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	642, 764, 785
BssMI	GATC	5 cut(s)	328, 706, 745, 768, 991
Bst2UI	CCWGG	3 cut(s)	644, 765, 786
Bst4CI	ACNGT	2 cut(s)	426, 797
Bst6I	CTCTTC	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	1000
BstC8I	GCNNGC	5 cut(s)	55, 59, 289, 368, 377
BstDEI	CTNAG	4 cut(s)	693, 728, 862, 1008
BstF5I	GGATG	2 cut(s)	529, 876
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	661
BstHHI	GCGC	2 cut(s)	660, 804
BstKTI	GATC	5 cut(s)	331, 709, 748, 771, 994
BstMAI	GTCTC	2 cut(s)	591, 905
BstMBI	GATC	5 cut(s)	328, 706, 745, 768, 991
BstMWI	GCNNNNNNNGC	5 cut(s)	372, 376, 542, 732, 808
BstNI	CCWGG	3 cut(s)	644, 765, 786
BstSCI	CCNGG	3 cut(s)	642, 763, 784
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	768, 991
BstYI	RGATCY	2 cut(s)	768, 991
BsuRI	GGCC	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	529, 876
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	5 cut(s)	55, 59, 289, 368, 377
CfoI	GCGC	2 cut(s)	660, 804
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	2 cut(s)	547, 663
CseI	GACGC	1 cut(s)	573
CviAII	CATG	4 cut(s)	87, 440, 515, 688
DdeI	CTNAG	4 cut(s)	693, 728, 862, 1008
DpnI	GATC	5 cut(s)	330, 708, 747, 770, 993
DpnII	GATC	5 cut(s)	328, 706, 745, 768, 991
DraI	TTTAAA	2 cut(s)	654, 951
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco32I	GATATC	1 cut(s)	569
Eco47I	GGWCC	2 cut(s)	547, 663
Eco47III	AGCGCT	1 cut(s)	659
EcoRII	CCWGG	3 cut(s)	642, 763, 784
EcoRV	GATATC	1 cut(s)	569
EcoT22I	ATGCAT	1 cut(s)	737
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	4 cut(s)	90, 443, 518, 691
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FatI	CATG	4 cut(s)	86, 439, 514, 687
FauI	CCCGC	2 cut(s)	32, 66
FokI	GGATG	2 cut(s)	536, 883
FspBI	CTAG	2 cut(s)	135, 233
FspI	TGCGCA	1 cut(s)	803
GlaI	GCGC	2 cut(s)	659, 803
GsaI	CCCAGC	2 cut(s)	273, 295
HaeII	RGCGCY	1 cut(s)	661
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	1 cut(s)	573
HhaI	GCGC	2 cut(s)	660, 804
Hin1II	CATG	4 cut(s)	90, 443, 518, 691
Hin6I	GCGC	2 cut(s)	658, 802
HinP1I	GCGC	2 cut(s)	658, 802
HinfI	GANTC	5 cut(s)	119, 459, 852, 925, 1043
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	2 cut(s)	365, 589
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	4 cut(s)	118, 328, 619, 731
Hpy188III	TCNNGA	2 cut(s)	233, 590
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	5 cut(s)	210, 399, 441, 833, 860
HpyCH4III	ACNGT	2 cut(s)	426, 797
HpyCH4V	TGCA	3 cut(s)	53, 486, 735
HpyF10VI	GCNNNNNNNGC	5 cut(s)	372, 376, 542, 732, 808
HpyF3I	CTNAG	4 cut(s)	693, 728, 862, 1008
Hsp92II	CATG	4 cut(s)	90, 443, 518, 691
HspAI	GCGC	2 cut(s)	658, 802
KroI	GCCGGC	1 cut(s)	375
KroNI	GCCGGC	1 cut(s)	377
Kzo9I	GATC	5 cut(s)	328, 706, 745, 768, 991
LmnI	GCTCC	2 cut(s)	101, 787
LweI	GCATC	4 cut(s)	70, 119, 722, 798
MaeI	CTAG	2 cut(s)	135, 233
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	5 cut(s)	330, 708, 747, 770, 993
MboI	GATC	5 cut(s)	328, 706, 745, 768, 991
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	2 cut(s)	768, 991
MhlI	GDGCHC	1 cut(s)	372
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	6 cut(s)	69, 93, 608, 700, 952, 973
MluNI	TGGCCA	1 cut(s)	513
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	2 cut(s)	424, 796
MnlI	CCTC	7 cut(s)	133, 213, 255, 332, 353, 737, 885
Mox20I	TGGCCA	1 cut(s)	513
Mph1103I	ATGCAT	1 cut(s)	737
MroNI	GCCGGC	1 cut(s)	375
MscI	TGGCCA	1 cut(s)	513
MseI	TTAA	8 cut(s)	240, 309, 419, 603, 653, 678, 887, 950
MslI	CAYNNNNRTG	2 cut(s)	406, 986
Msp20I	TGGCCA	1 cut(s)	513
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	3 cut(s)	644, 765, 786
MunI	CAATTG	1 cut(s)	608
MvaI	CCWGG	3 cut(s)	644, 765, 786
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	372, 376, 542, 732, 808
NaeI	GCCGGC	1 cut(s)	377
NdeII	GATC	5 cut(s)	328, 706, 745, 768, 991
NgoMIV	GCCGGC	1 cut(s)	375
NlaIII	CATG	4 cut(s)	90, 443, 518, 691
NlaIV	GGNNCC	2 cut(s)	770, 783
NmuCI	GTSAC	1 cut(s)	450
NsbI	TGCGCA	1 cut(s)	803
NsiI	ATGCAT	1 cut(s)	737
NspV	TTCGAA	1 cut(s)	1000
OliI	CACNNNNGTG	1 cut(s)	406
PdiI	GCCGGC	1 cut(s)	377
PfeI	GAWTC	4 cut(s)	119, 852, 925, 1043
PflMI	CCANNNNNTGG	1 cut(s)	778
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Psp6I	CCWGG	3 cut(s)	642, 763, 784
PspFI	CCCAGC	2 cut(s)	269, 291
PspGI	CCWGG	3 cut(s)	642, 763, 784
PspN4I	GGNNCC	2 cut(s)	770, 783
PspPI	GGNCC	2 cut(s)	547, 663
PsuI	RGATCY	2 cut(s)	768, 991
RseI	CAYNNNNRTG	2 cut(s)	406, 986
SaqAI	TTAA	8 cut(s)	240, 309, 419, 603, 653, 678, 887, 950
Sau3AI	GATC	5 cut(s)	328, 706, 745, 768, 991
Sau96I	GGNCC	2 cut(s)	547, 663
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	3 cut(s)	644, 765, 786
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	4 cut(s)	70, 119, 722, 798
SfuI	TTCGAA	1 cut(s)	1000
SinI	GGWCC	2 cut(s)	547, 663
SmiMI	CAYNNNNRTG	2 cut(s)	406, 986
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	6 cut(s)	69, 93, 608, 700, 952, 973
SsiI	CCGC	7 cut(s)	25, 59, 373, 521, 545, 826, 1030
SspMI	CTAG	2 cut(s)	135, 233
StyD4I	CCNGG	3 cut(s)	642, 763, 784
TaaI	ACNGT	2 cut(s)	426, 797
TaqI	TCGA	1 cut(s)	1000
TasI	AATT	6 cut(s)	69, 93, 608, 700, 952, 973
TfiI	GAWTC	4 cut(s)	119, 852, 925, 1043
Tru1I	TTAA	8 cut(s)	240, 309, 419, 603, 653, 678, 887, 950
Tru9I	TTAA	8 cut(s)	240, 309, 419, 603, 653, 678, 887, 950
TseFI	GTSAC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	2 cut(s)	381, 531
TspGWI	ACGGA	2 cut(s)	471, 699
Van91I	CCANNNNNTGG	1 cut(s)	778
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	2 cut(s)	547, 663
XapI	RAATTY	3 cut(s)	93, 952, 973
XbaI	TCTAGA	1 cut(s)	232
XspI	CTAG	2 cut(s)	135, 233
Zsp2I	ATGCAT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.