Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027055.1

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Forward (+)

28 .. 612

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027055.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggtagaagtttcagttgccacccgcgttcaaatcaaaccctttgtttctgcaagcccgcatcttccaatttgtcgcaaaataacatggaaaatttgtggagctgtggcatcatctgattcctcatcttcttctagttgtgggtatagcaggtatgataaacaaacgatagatgatgggcaagcagtattgcagaagaagaagagaaggagggtgttctttctagatgttaatcctctgtgttatgctggaagtaaacccagcttacactcttttgctcgttgggtttccttgttttttaagcaagttagcctctcggatcctgttatcgctgttgttgatggtgaaggagggagcgagctccgccggcagttgctaccttcatataaaacgcacaggtggaagttgttaagacagttttcaaggggtcatgttggaaggtcacacggagtcatcaaagacgtttttaccaaatgcaatgtgcctgtgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

164

Amino Acids

18.33

Weight (kDa)

10.08

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AccII	CGCG	1 cut(s)	27
AciI	CCGC	3 cut(s)	25, 59, 364
AclWI	GGATC	2 cut(s)	314, 327
AcsI	RAATTY	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	32, 423
AluBI	AGCT	3 cut(s)	104, 264, 361
AluI	AGCT	3 cut(s)	104, 264, 361
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	314, 327
ApoI	RAATTY	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	2 cut(s)	170, 335
BfaI	CTAG	2 cut(s)	135, 224
BfuAI	ACCTGC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	321
BmsI	GCATC	2 cut(s)	70, 119
BsaBI	GATNNNNATC	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	484
Bse8I	GATNNNNATC	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	3 cut(s)	25, 59, 364
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	314, 327
BsrDI	GCAATG	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssMI	GATC	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	197
BstC8I	GCNNGC	5 cut(s)	55, 59, 183, 359, 368
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 367
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	5 cut(s)	55, 59, 183, 359, 368
Cfr10I	RCCGGY	1 cut(s)	366
CviAII	CATG	2 cut(s)	87, 431
CviJI	RGCY	5 cut(s)	57, 104, 264, 312, 361
CviKI_1	RGCY	5 cut(s)	57, 104, 264, 312, 361
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	2 cut(s)	90, 434
FaiI	YATR	7 cut(s)	88, 147, 156, 246, 385, 387, 432
FatI	CATG	2 cut(s)	86, 430
FauI	CCCGC	2 cut(s)	32, 66
FriOI	GRGCYC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	135, 224
GsaI	CCCAGC	1 cut(s)	264
HapII	CCGG	1 cut(s)	367
Hin1II	CATG	2 cut(s)	90, 434
HinfI	GANTC	2 cut(s)	119, 450
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	118, 319
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	4 cut(s)	201, 341, 390, 432
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	53, 193, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 367
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	90, 434
KroI	GCCGGC	1 cut(s)	366
KroNI	GCCGGC	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	3 cut(s)	101, 354, 366
LpnPI	CCDG	6 cut(s)	136, 234, 274, 336, 380, 382
LweI	GCATC	2 cut(s)	70, 119
MaeI	CTAG	2 cut(s)	135, 224
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	6 cut(s)	56, 120, 123, 208, 211, 214
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	2 cut(s)	69, 93
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	5 cut(s)	133, 204, 246, 323, 344
MroNI	GCCGGC	1 cut(s)	366
MseI	TTAA	4 cut(s)	231, 300, 410, 493
MspI	CCGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	363, 367
NaeI	GCCGGC	1 cut(s)	368
NdeII	GATC	1 cut(s)	319
NgoMIV	GCCGGC	1 cut(s)	366
NlaIII	CATG	2 cut(s)	90, 434
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	441
PdiI	GCCGGC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	4 cut(s)	231, 300, 410, 493
Sau3AI	GATC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	8 cut(s)	106, 155, 266, 363, 382, 401, 443, 465
SfaNI	GCATC	2 cut(s)	70, 119
Sse9I	AATT	2 cut(s)	69, 93
SsiI	CCGC	3 cut(s)	25, 59, 364
SspMI	CTAG	2 cut(s)	135, 224
SstI	GAGCTC	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	417
TaiI	ACGT	1 cut(s)	465
TasI	AATT	2 cut(s)	69, 93
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	4 cut(s)	231, 300, 410, 493
Tru9I	TTAA	4 cut(s)	231, 300, 410, 493
TseFI	GTSAC	1 cut(s)	441
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	1 cut(s)	462
XapI	RAATTY	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	223
XspI	CTAG	2 cut(s)	135, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.