Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013301.1

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Forward (+)

51774 .. 53948

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013301.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atggtagaagtttcagttgccacccgcgttcaaatcaaaccctttgtttctgcaagcccgcatcttccaatttgtcgcaaaataacatggaaaatttgtggagctgtggcatcatctgattcctcatcttcttctagttgtgggtatagcaggtatgataaacaaacgatagatgatgggcaagtagtattgcagaagaagaagagaaggagggtgttctttctagatgttaatcctctgtgttatgctggaagtaaacccagcttacactcttttgctcgttgggtttccttgttttttaagcaagttagcctctcggatcctgttatcgctgttgttgatggtgaaggagggagcgagctccgccggcagttgctaccttcatataaaacgcacaggtggaagttgttaagacagttttcaaggggtcatgttggaaggtcacacggagtcatcaaagacgtttttaccaaatgcaatgtgcctgtcataaaaatagatggccatgaagcggatgatgttatagctactcttgcggaacaagttctacaaataggatatcaagtggtgattgcgtctcctgataaagattttaagcaattgctttcagaagatgtccaaatcgtaatgcccctggacgatttaaagcgctggtccttttacacccttaagcactacatggctcagtataattgtgatccgtgctgtgatttgagcctcagatgcattatgggagatcaagctgatggtgttcctgggatccaacatctggctcctgggtttggtcagaagactgccctaaagctcttgaaaaaacatggctcattggaaaatttactaaacatagcttcagtaagaactgtgggcagacagtatgcgcaagatgctcttacaaagtatgcggattatctacgaaggaactatgagattctttcccttagaagggatgtcaatgttcaacttaaagaggagtggcttgttccaagagacacaagcaatgattcaaaaactttgtcaaacttctttaaattcttggaagaaaccgagaagttcagtcatcaaagtggatctatttcaaatggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

361

Amino Acids

40.74

Weight (kDa)

9.14

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	879
Acc36I	ACCTGC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccII	CGCG	1 cut(s)	27
AciI	CCGC	6 cut(s)	25, 59, 364, 512, 536, 902
AclWI	GGATC	6 cut(s)	314, 327, 692, 754, 767, 1075
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	3 cut(s)	93, 832, 1028
AcuI	CTGAAG	1 cut(s)	834
AfeI	AGCGCT	1 cut(s)	650
AfiI	CCNNNNNNNGG	5 cut(s)	511, 769, 782, 942, 943
AflII	CTTAAG	1 cut(s)	668
AgsI	TTSAA	6 cut(s)	32, 423, 811, 959, 1005, 1077
AjnI	CCWGG	3 cut(s)	633, 754, 775
AluBI	AGCT	7 cut(s)	104, 264, 361, 527, 743, 805, 848
AluI	AGCT	7 cut(s)	104, 264, 361, 527, 743, 805, 848
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	582, 981
AlwI	GGATC	6 cut(s)	314, 327, 692, 754, 767, 1075
Aor51HI	AGCGCT	1 cut(s)	650
AoxI	GGCC	1 cut(s)	502
ApoI	RAATTY	3 cut(s)	93, 832, 1028
ArsI	GACNNNNNNTTYG	2 cut(s)	998, 1030
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	2 cut(s)	651, 880
AspS9I	GGNCC	1 cut(s)	654
AsuHPI	GGTGA	2 cut(s)	356, 580
AvaII	GGWCC	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	504
BamHI	GGATCC	2 cut(s)	319, 759
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	1 cut(s)	363
BccI	CCATC	4 cut(s)	170, 335, 494, 740
BciT130I	CCWGG	3 cut(s)	635, 756, 777
BcoDI	GTCTC	2 cut(s)	582, 981
BfaI	CTAG	2 cut(s)	135, 224
BfoI	RGCGCY	1 cut(s)	652
BfrI	CTTAAG	1 cut(s)	668
BfuAI	ACCTGC	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	635, 756, 777
Bme18I	GGWCC	1 cut(s)	654
BmgT120I	GGNCC	1 cut(s)	654
BmiI	GGNNCC	3 cut(s)	321, 761, 774
BmrFI	CCNGG	3 cut(s)	635, 756, 777
BmsI	GCATC	4 cut(s)	70, 119, 713, 874
BpiI	GAAGAC	1 cut(s)	797
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	633, 755, 776
Bsc4I	CCNNNNNNNGG	5 cut(s)	511, 769, 782, 942, 943
Bse118I	RCCGGY	1 cut(s)	366
Bse3DI	GCAATG	2 cut(s)	484, 1003
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	3 cut(s)	635, 756, 777
BseDI	CCNNGG	3 cut(s)	633, 755, 776
BseGI	GGATG	2 cut(s)	520, 952
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	5 cut(s)	511, 769, 782, 942, 943
BseMI	GCAATG	2 cut(s)	484, 1003
BseMII	CTCAG	2 cut(s)	698, 733
BseRI	GAGGAG	1 cut(s)	983
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	5 cut(s)	511, 769, 782, 942, 943
BsmAI	GTCTC	2 cut(s)	582, 981
BsmBI	CGTCTC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	5 cut(s)	319, 697, 736, 759, 1067
BspACI	CCGC	6 cut(s)	25, 59, 364, 512, 536, 902
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	2 cut(s)	697, 732
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	321, 761, 774
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	6 cut(s)	314, 327, 692, 754, 767, 1075
BspTI	CTTAAG	1 cut(s)	668
BsrDI	GCAATG	2 cut(s)	484, 1003
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	3 cut(s)	633, 755, 776
BssMI	GATC	5 cut(s)	319, 697, 736, 759, 1067
Bst2UI	CCWGG	3 cut(s)	635, 756, 777
Bst4CI	ACNGT	3 cut(s)	417, 862, 873
Bst6I	CTCTTC	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	668
BstC8I	GCNNGC	4 cut(s)	55, 59, 359, 368
BstDEI	CTNAG	3 cut(s)	684, 719, 938
BstF5I	GGATG	2 cut(s)	520, 952
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	652
BstHHI	GCGC	2 cut(s)	651, 880
BstKTI	GATC	5 cut(s)	322, 700, 739, 762, 1070
BstMAI	GTCTC	2 cut(s)	582, 981
BstMBI	GATC	5 cut(s)	319, 697, 736, 759, 1067
BstMWI	GCNNNNNNNGC	5 cut(s)	363, 367, 533, 723, 884
BstNI	CCWGG	3 cut(s)	635, 756, 777
BstSCI	CCNGG	3 cut(s)	633, 754, 775
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	3 cut(s)	319, 759, 1067
BstYI	RGATCY	3 cut(s)	319, 759, 1067
BsuRI	GGCC	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	520, 952
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	4 cut(s)	55, 59, 359, 368
CfoI	GCGC	2 cut(s)	651, 880
Cfr10I	RCCGGY	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	654
CseI	GACGC	1 cut(s)	564
CviAII	CATG	5 cut(s)	87, 431, 506, 679, 818
DdeI	CTNAG	3 cut(s)	684, 719, 938
DpnI	GATC	5 cut(s)	321, 699, 738, 761, 1069
DpnII	GATC	5 cut(s)	319, 697, 736, 759, 1067
DraI	TTTAAA	2 cut(s)	645, 1027
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	654
Eco47III	AGCGCT	1 cut(s)	650
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	834
EcoICRI	GAGCTC	1 cut(s)	361
EcoRII	CCWGG	3 cut(s)	633, 754, 775
EcoRV	GATATC	1 cut(s)	560
EcoT22I	ATGCAT	1 cut(s)	728
EcoT38I	GRGCYC	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	5 cut(s)	90, 434, 509, 682, 821
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FatI	CATG	5 cut(s)	86, 430, 505, 678, 817
FauI	CCCGC	2 cut(s)	32, 66
FokI	GGATG	2 cut(s)	527, 959
FriOI	GRGCYC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	135, 224
FspI	TGCGCA	1 cut(s)	879
GlaI	GCGC	2 cut(s)	650, 879
GsaI	CCCAGC	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	652
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	1 cut(s)	564
HhaI	GCGC	2 cut(s)	651, 880
Hin1II	CATG	5 cut(s)	90, 434, 509, 682, 821
Hin6I	GCGC	2 cut(s)	649, 878
HinP1I	GCGC	2 cut(s)	649, 878
HinfI	GANTC	4 cut(s)	119, 450, 928, 1001
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	2 cut(s)	356, 580
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	5 cut(s)	118, 319, 610, 722, 789
Hpy188III	TCNNGA	3 cut(s)	224, 581, 808
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	6 cut(s)	201, 341, 390, 432, 909, 936
HpyCH4III	ACNGT	3 cut(s)	417, 862, 873
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	53, 193, 477, 726
HpyF10VI	GCNNNNNNNGC	5 cut(s)	363, 367, 533, 723, 884
HpyF3I	CTNAG	3 cut(s)	684, 719, 938
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	5 cut(s)	90, 434, 509, 682, 821
HspAI	GCGC	2 cut(s)	649, 878
KroI	GCCGGC	1 cut(s)	366
KroNI	GCCGGC	1 cut(s)	368
Kzo9I	GATC	5 cut(s)	319, 697, 736, 759, 1067
LmnI	GCTCC	4 cut(s)	101, 354, 366, 778
LweI	GCATC	4 cut(s)	70, 119, 713, 874
MaeI	CTAG	2 cut(s)	135, 224
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	5 cut(s)	321, 699, 738, 761, 1069
MboI	GATC	5 cut(s)	319, 697, 736, 759, 1067
MboII	GAAGA	9 cut(s)	56, 120, 123, 208, 211, 214, 623, 802, 1049
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	3 cut(s)	319, 759, 1067
MhlI	GDGCHC	1 cut(s)	363
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	6 cut(s)	69, 93, 599, 691, 832, 1028
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	2 cut(s)	415, 787
MnlI	CCTC	7 cut(s)	133, 204, 246, 323, 344, 728, 961
Mox20I	TGGCCA	1 cut(s)	504
Mph1103I	ATGCAT	1 cut(s)	728
MroNI	GCCGGC	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	8 cut(s)	231, 300, 410, 594, 644, 669, 963, 1026
MslI	CAYNNNNRTG	1 cut(s)	1062
Msp20I	TGGCCA	1 cut(s)	504
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	3 cut(s)	635, 756, 777
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	3 cut(s)	635, 756, 777
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	363, 367, 533, 723, 884
NaeI	GCCGGC	1 cut(s)	368
NdeII	GATC	5 cut(s)	319, 697, 736, 759, 1067
NgoMIV	GCCGGC	1 cut(s)	366
NlaIII	CATG	5 cut(s)	90, 434, 509, 682, 821
NlaIV	GGNNCC	3 cut(s)	321, 761, 774
NmuCI	GTSAC	1 cut(s)	441
NsbI	TGCGCA	1 cut(s)	879
NsiI	ATGCAT	1 cut(s)	728
PdiI	GCCGGC	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	3 cut(s)	119, 928, 1001
PflMI	CCANNNNNTGG	1 cut(s)	769
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	633, 754, 775
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	3 cut(s)	633, 754, 775
PspN4I	GGNNCC	3 cut(s)	321, 761, 774
PspPI	GGNCC	1 cut(s)	654
PsrI	GAACNNNNNNTAC	2 cut(s)	531, 563
PsuI	RGATCY	3 cut(s)	319, 759, 1067
RseI	CAYNNNNRTG	1 cut(s)	1062
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	8 cut(s)	231, 300, 410, 594, 644, 669, 963, 1026
Sau3AI	GATC	5 cut(s)	319, 697, 736, 759, 1067
Sau96I	GGNCC	1 cut(s)	654
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	3 cut(s)	635, 756, 777
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	4 cut(s)	70, 119, 713, 874
SinI	GGWCC	1 cut(s)	654
SmiMI	CAYNNNNRTG	1 cut(s)	1062
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	6 cut(s)	69, 93, 599, 691, 832, 1028
SsiI	CCGC	6 cut(s)	25, 59, 364, 512, 536, 902
SspMI	CTAG	2 cut(s)	135, 224
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	633, 754, 775
TaaI	ACNGT	3 cut(s)	417, 862, 873
TaiI	ACGT	1 cut(s)	465
TasI	AATT	6 cut(s)	69, 93, 599, 691, 832, 1028
TfiI	GAWTC	3 cut(s)	119, 928, 1001
Tru1I	TTAA	8 cut(s)	231, 300, 410, 594, 644, 669, 963, 1026
Tru9I	TTAA	8 cut(s)	231, 300, 410, 594, 644, 669, 963, 1026
TseFI	GTSAC	1 cut(s)	441
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	2 cut(s)	372, 522
TspGWI	ACGGA	2 cut(s)	462, 690
Van91I	CCANNNNNTGG	1 cut(s)	769
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	654
XapI	RAATTY	3 cut(s)	93, 832, 1028
XbaI	TCTAGA	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	2 cut(s)	135, 224
Zsp2I	ATGCAT	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.