Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Forward (+)

32219891 .. 32223628

Gene Structure 3738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCAGAAGTTTCAGTTGCCACCCGCGTTCAAATCAAACCCTTTGTTTCTGCAAGCCCGCATCTTCCAATTTGTCGCAACATAACATGGAAAATTTGTGGAGCTGTGGCATCATCTGATTCCTCATCTTCTTCTAGTTGTGGGTATAGCAGGTATGATAAACAAACGATAGATGATGGACAAGTAGTATTGCCCAAGAAGAAGAAGAAGAGAAGGAGGGTGTTCTTTCTAGATGTTAATCCTCTGTGTTATGCTGGAAGTAAACCCTGCTTACACTCTTTTGCTCGCTGGGTTTCCTTGTTTTTTAAGCAAGTTAGCCTCTCTGATCCTGTTATCGCTGTTGTTGATGGTGAAAGAGGAAGCGAGCTCCGCCGGCAGTTGCTACCTTCATATAAAACGCACAGGTGGAAGTTGTTAAGACAGTTTTCAAGGGGTCATGTTGGAAGGTCACACGGAGTCATCAAAGATGTTTTTACAAAATGCAATGTGCCTGTCATAAAAATAGATGGCCATGAAGCGGATGATGTTATAGCTACTCTTGCGGAACAAGTTCTACAAATAGGATATCAAGTGGTGATTGCGTCTCCTGATAAAGATTTTAAGCAATTGCTTTCAGAAGATGTCCAAATCGTAATGCCCCTGGATGATTTAAAGCGCTGGTCCTTTTACACCCTTAAGCACTACATGGCTCAGTATAATTGTGATCCGTGCTGTGATTTGAGCCTCAGATGCATTATGGGAGATCAAGCTGATGGTGTTCCTGGGATCCAACATCTGGCTCCTGGGTTTGGTCAGAAGACTGCCCTAAAGCTCTTGAAAAAACATGGCTCATTGGAAAATTTACTAAACATAGCTTCAGTAAGAACTGTGGGCAGACAGTATGCGCAAGATGCTCTTACAAAGTATGCGGATTATCTACGAAGGAACTATGAGATTCTTTCCCTTAGAAGGGATGTCAATGTTCAACTTAAAGAGGAGTGGCTTGTTCCAAGAGACACAAGCAATGATTCAAAAACTTTGTCAAACTTCTTTAAATTCTTGGAAGAAACCGAGAAGTTCAGTCATCAAAGTGGATTTATTTCAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

363

Amino Acids

41.09

Weight (kDa)

9.22

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5_3_exonuc_N	PF02739	92 - 225	4.3e-22	5'-3' exonuclease, N-terminal resolvase-like domain
5_3_exonuc	PF01367	244 - 329	6e-14	5'-3' exonuclease, C-terminal SAM fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	885
Acc36I	ACCTGC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	775
AccII	CGCG	1 cut(s)	27
AciI	CCGC	6 cut(s)	25, 59, 370, 518, 542, 908
AclWI	GGATC	4 cut(s)	320, 698, 760, 773
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	3 cut(s)	93, 838, 1034
AcuI	CTGAAG	1 cut(s)	840
AfeI	AGCGCT	1 cut(s)	656
AfiI	CCNNNNNNNGG	5 cut(s)	517, 775, 788, 948, 949
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	6 cut(s)	32, 429, 817, 965, 1011, 1083
AjnI	CCWGG	3 cut(s)	639, 760, 781
AluBI	AGCT	6 cut(s)	104, 367, 533, 749, 811, 854
AluI	AGCT	6 cut(s)	104, 367, 533, 749, 811, 854
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	588, 987
AlwI	GGATC	4 cut(s)	320, 698, 760, 773
Aor51HI	AGCGCT	1 cut(s)	656
AoxI	GGCC	1 cut(s)	508
ApoI	RAATTY	3 cut(s)	93, 838, 1034
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	2 cut(s)	657, 886
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	2 cut(s)	362, 586
AvaII	GGWCC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	510
BamHI	GGATCC	1 cut(s)	765
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	803
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	4 cut(s)	170, 341, 500, 746
BciT130I	CCWGG	3 cut(s)	641, 762, 783
BcoDI	GTCTC	2 cut(s)	588, 987
BfaI	CTAG	2 cut(s)	135, 230
BfoI	RGCGCY	1 cut(s)	658
BfrI	CTTAAG	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	141
Bme1390I	CCNGG	3 cut(s)	641, 762, 783
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	2 cut(s)	767, 780
BmrFI	CCNGG	3 cut(s)	641, 762, 783
BmsI	GCATC	4 cut(s)	70, 119, 719, 880
BpiI	GAAGAC	1 cut(s)	803
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	639, 761, 782
Bsc4I	CCNNNNNNNGG	5 cut(s)	517, 775, 788, 948, 949
Bse118I	RCCGGY	1 cut(s)	372
Bse3DI	GCAATG	2 cut(s)	490, 1009
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	3 cut(s)	641, 762, 783
BseDI	CCNNGG	3 cut(s)	639, 761, 782
BseGI	GGATG	3 cut(s)	526, 649, 958
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	5 cut(s)	517, 775, 788, 948, 949
BseMI	GCAATG	2 cut(s)	490, 1009
BseMII	CTCAG	2 cut(s)	704, 739
BseRI	GAGGAG	1 cut(s)	989
BseYI	CCCAGC	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	5 cut(s)	517, 775, 788, 948, 949
BsmAI	GTCTC	2 cut(s)	588, 987
BsmBI	CGTCTC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	325, 703, 742, 765
BspACI	CCGC	6 cut(s)	25, 59, 370, 518, 542, 908
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	703, 738
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	767, 780
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	4 cut(s)	320, 698, 760, 773
BspTI	CTTAAG	1 cut(s)	674
BsrDI	GCAATG	2 cut(s)	490, 1009
BsrFI	RCCGGY	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	3 cut(s)	639, 761, 782
BssMI	GATC	4 cut(s)	325, 703, 742, 765
Bst2UI	CCWGG	3 cut(s)	641, 762, 783
Bst4CI	ACNGT	3 cut(s)	423, 868, 879
Bst6I	CTCTTC	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	674
BstC8I	GCNNGC	5 cut(s)	55, 59, 286, 365, 374
BstDEI	CTNAG	3 cut(s)	690, 725, 944
BstF5I	GGATG	3 cut(s)	526, 649, 958
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	2 cut(s)	657, 886
BstKTI	GATC	4 cut(s)	328, 706, 745, 768
BstMAI	GTCTC	2 cut(s)	588, 987
BstMBI	GATC	4 cut(s)	325, 703, 742, 765
BstMWI	GCNNNNNNNGC	5 cut(s)	369, 373, 539, 729, 890
BstNI	CCWGG	3 cut(s)	641, 762, 783
BstSCI	CCNGG	3 cut(s)	639, 760, 781
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	1 cut(s)	765
BstYI	RGATCY	1 cut(s)	765
BsuRI	GGCC	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	526, 649, 958
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	5 cut(s)	55, 59, 286, 365, 374
CfoI	GCGC	2 cut(s)	657, 886
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	660
CseI	GACGC	1 cut(s)	570
CviAII	CATG	5 cut(s)	87, 437, 512, 685, 824
DdeI	CTNAG	3 cut(s)	690, 725, 944
DpnI	GATC	4 cut(s)	327, 705, 744, 767
DpnII	GATC	4 cut(s)	325, 703, 742, 765
DraI	TTTAAA	2 cut(s)	651, 1033
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	660
Eco47III	AGCGCT	1 cut(s)	656
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	840
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	3 cut(s)	639, 760, 781
EcoRV	GATATC	1 cut(s)	566
EcoT22I	ATGCAT	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	5 cut(s)	90, 440, 515, 688, 827
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FatI	CATG	5 cut(s)	86, 436, 511, 684, 823
FauI	CCCGC	2 cut(s)	32, 66
FokI	GGATG	3 cut(s)	533, 656, 965
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	135, 230
FspI	TGCGCA	1 cut(s)	885
GlaI	GCGC	2 cut(s)	656, 885
GsaI	CCCAGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	658
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	1 cut(s)	373
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	2 cut(s)	657, 886
Hin1II	CATG	5 cut(s)	90, 440, 515, 688, 827
Hin6I	GCGC	2 cut(s)	655, 884
HinP1I	GCGC	2 cut(s)	655, 884
HinfI	GANTC	4 cut(s)	119, 456, 934, 1007
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	2 cut(s)	362, 586
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	5 cut(s)	118, 325, 616, 728, 795
Hpy188III	TCNNGA	3 cut(s)	230, 587, 814
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	5 cut(s)	207, 396, 438, 915, 942
HpyCH4III	ACNGT	3 cut(s)	423, 868, 879
HpyCH4V	TGCA	3 cut(s)	53, 483, 732
HpyF10VI	GCNNNNNNNGC	5 cut(s)	369, 373, 539, 729, 890
HpyF3I	CTNAG	3 cut(s)	690, 725, 944
Hsp92II	CATG	5 cut(s)	90, 440, 515, 688, 827
HspAI	GCGC	2 cut(s)	655, 884
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Kzo9I	GATC	4 cut(s)	325, 703, 742, 765
LmnI	GCTCC	3 cut(s)	101, 372, 784
LweI	GCATC	4 cut(s)	70, 119, 719, 880
MaeI	CTAG	2 cut(s)	135, 230
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	4 cut(s)	327, 705, 744, 767
MboI	GATC	4 cut(s)	325, 703, 742, 765
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	1 cut(s)	765
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	6 cut(s)	69, 93, 605, 697, 838, 1034
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	2 cut(s)	421, 793
MnlI	CCTC	7 cut(s)	133, 210, 252, 329, 350, 734, 967
Mox20I	TGGCCA	1 cut(s)	510
Mph1103I	ATGCAT	1 cut(s)	734
MroNI	GCCGGC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
MslI	CAYNNNNRTG	1 cut(s)	1068
Msp20I	TGGCCA	1 cut(s)	510
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	3 cut(s)	641, 762, 783
MunI	CAATTG	1 cut(s)	605
MvaI	CCWGG	3 cut(s)	641, 762, 783
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	369, 373, 539, 729, 890
NaeI	GCCGGC	1 cut(s)	374
NdeII	GATC	4 cut(s)	325, 703, 742, 765
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	5 cut(s)	90, 440, 515, 688, 827
NlaIV	GGNNCC	2 cut(s)	767, 780
NmuCI	GTSAC	1 cut(s)	447
NsbI	TGCGCA	1 cut(s)	885
NsiI	ATGCAT	1 cut(s)	734
PdiI	GCCGGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	119, 934, 1007
PflMI	CCANNNNNTGG	1 cut(s)	775
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	3 cut(s)	639, 760, 781
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	3 cut(s)	639, 760, 781
PspN4I	GGNNCC	2 cut(s)	767, 780
PspPI	GGNCC	1 cut(s)	660
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PsuI	RGATCY	1 cut(s)	765
RseI	CAYNNNNRTG	1 cut(s)	1068
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
Sau3AI	GATC	4 cut(s)	325, 703, 742, 765
Sau96I	GGNCC	1 cut(s)	660
SchI	GAGTC	1 cut(s)	465
ScrFI	CCNGG	3 cut(s)	641, 762, 783
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	4 cut(s)	70, 119, 719, 880
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	1068
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	6 cut(s)	69, 93, 605, 697, 838, 1034
SsiI	CCGC	6 cut(s)	25, 59, 370, 518, 542, 908
SspMI	CTAG	2 cut(s)	135, 230
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	639, 760, 781
TaaI	ACNGT	3 cut(s)	423, 868, 879
TasI	AATT	6 cut(s)	69, 93, 605, 697, 838, 1034
TfiI	GAWTC	3 cut(s)	119, 934, 1007
Tru1I	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
Tru9I	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
TseFI	GTSAC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	2 cut(s)	378, 528
TspGWI	ACGGA	2 cut(s)	468, 696
Van91I	CCANNNNNTGG	1 cut(s)	775
Vha464I	CTTAAG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	3 cut(s)	93, 838, 1034
XbaI	TCTAGA	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	2 cut(s)	135, 230
Zsp2I	ATGCAT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.