Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Reverse (-)

8722551 .. 8723923

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0066000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCTAAGAAGGTCTCGGCACTAGCCATCACTGATAAGGGGCGAGTTTCATTCGAGGCTGCTGGTGGATGCGGCAGTCTCAAGGCATTCGTACATTGTGGGACGGTTGCAGATCGTCTCCAATGGTCATTGGTTCTATGGGCAATCCATGTTGTTCTCGCCGACTATAATGGTTTGACTGATGCAGCAAAGGTTCCCATCTCCGAGTTTCCCGTGTGGGTGGAAATTCTTGGATTCCTGCCTGCCTTGGTGACAAAGGAGGCCACTGAATTGGTGGGTGCTACTCTGGGACATATCCTGCAATTGGATCGTCTGGGCATCCAACGGGGAACAAGGGCTCGGGTCAGGATTCTACATCGCATCTCTGATCCAGTCAAACAAGCTTACCCTTCTATGCTGTTTGAGTTTGGATCCGAGAAGGCATCAGCCATGCTCTCCTTCAGGTATGAAAGAACCTATGGCTTCTGCAAGATTTGTGGTTTATTGGAACATGACTGGTCTGGGTGTAGAGATCTGCAGGATATGTCAGGCTTTCAGGTGTTCGGCCACTCCGGATCTGGAATGCAGCAGGGTGGGATATCCTCAAGCTCTGGTAACCCTAACCCTTTCTGTAACCCTAACCCCACTGCTGGGGTTGGGCCGGGGACCGGAAGGCCTTCTTCATCAGGTTCTGGGTCCTCAATTACGAGTAGGTTTCTTACACCTGCGCCTGTGGTTCCAAAACCTACCACTGGGATCAGTTTGGAGCCTGTGGTGCAGCTTTCAGGGGCCAAGCATTGTGCTTCAATGAAGTTCGTGATTTATAGCAAGAATAATAAGGCAGTAGGCCTTGCACAGGTTTCGGTACCTTTGGAGCTAGAATTTGAGCCTGAAATGGCTCTCCCTTATCAAGATGGTAAGTTGAAGCTGGAGGCTGCTGGCTTTGGTGCCAAGAGAATGAAGAAGATGAGTTTTCATTCTGCTAAGCGTGAGTTGGTGATGAGTGAGGTGAACGCTATTGATGCGTCTTCTTTGGTTTCTACTGGTGATGATCCCAGGGAAACCCCTTCTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

351

Amino Acids

37.46

Weight (kDa)

8.77

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	141 - 170	3.2e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	712
Acc36I	ACCTGC	1 cut(s)	712
Acc65I	GGTACC	1 cut(s)	844
AccB1I	GGYRCC	2 cut(s)	844, 926
AccIII	TCCGGA	1 cut(s)	551
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	7 cut(s)	315, 362, 405, 418, 562, 743, 1025
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	225, 860
AcuI	CTGAAG	1 cut(s)	424
AfaI	GTAC	2 cut(s)	93, 846
AfiI	CCNNNNNNNGG	6 cut(s)	304, 629, 630, 647, 731, 835
AgsI	TTSAA	2 cut(s)	786, 904
AjnI	CCWGG	1 cut(s)	1034
AluBI	AGCT	5 cut(s)	383, 588, 760, 856, 907
AluI	AGCT	5 cut(s)	383, 588, 760, 856, 907
Alw26I	GTCTC	3 cut(s)	19, 83, 122
AlwI	GGATC	7 cut(s)	315, 362, 405, 418, 562, 743, 1025
AlwNI	CAGNNNCTG	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	339
Aor13HI	TCCGGA	1 cut(s)	551
AoxI	GGCC	6 cut(s)	261, 544, 638, 653, 768, 826
ApeKI	GCWGC	5 cut(s)	59, 185, 565, 757, 914
ApoI	RAATTY	2 cut(s)	225, 860
Asp700I	GAANNNNTTC	1 cut(s)	655
Asp718I	GGTACC	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	4 cut(s)	638, 645, 675, 768
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	4 cut(s)	262, 988, 1000, 1037
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	2 cut(s)	645, 675
BamHI	GGATCC	1 cut(s)	410
BanI	GGYRCC	2 cut(s)	844, 926
BanII	GRGCYC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	999
BbvI	GCAGC	5 cut(s)	46, 197, 577, 769, 901
BccI	CCATC	3 cut(s)	35, 206, 887
BcgI	CGANNNNNNTGC	4 cut(s)	290, 324, 822, 856
BciT130I	CCWGG	1 cut(s)	1036
BcnI	CCSGG	1 cut(s)	642
BcoDI	GTCTC	3 cut(s)	19, 83, 122
BfaI	CTAG	2 cut(s)	23, 857
BfmI	CTRYAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	712
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	6 cut(s)	60, 73, 186, 566, 758, 915
BlpI	GCTNAGC	1 cut(s)	963
BlsI	GCNGC	6 cut(s)	61, 74, 187, 567, 759, 916
Bme1390I	CCNGG	2 cut(s)	642, 1036
Bme18I	GGWCC	2 cut(s)	645, 675
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	4 cut(s)	638, 645, 675, 768
BmiI	GGNNCC	9 cut(s)	195, 412, 646, 676, 717, 747, 769, 846, 928
BmrFI	CCNGG	2 cut(s)	642, 1036
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	6 cut(s)	59, 172, 327, 369, 431, 991
BmuI	ACTGGG	1 cut(s)	741
BpiI	GAAGAC	1 cut(s)	999
BpmI	CTGGAG	1 cut(s)	929
Bpu1102I	GCTNAGC	1 cut(s)	963
BpuEI	CTTGAG	2 cut(s)	65, 568
BpuMI	CCSGG	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	4 cut(s)	246, 641, 1034, 1035
BsaWI	WCCGGW	2 cut(s)	551, 647
Bsc4I	CCNNNNNNNGG	6 cut(s)	304, 629, 630, 647, 731, 835
Bse1I	ACTGG	4 cut(s)	371, 500, 736, 1027
BseAI	TCCGGA	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	1036
BseDI	CCNNGG	4 cut(s)	246, 641, 1034, 1035
BseGI	GGATG	2 cut(s)	74, 318
BseLI	CCNNNNNNNGG	6 cut(s)	304, 629, 630, 647, 731, 835
BseNI	ACTGG	4 cut(s)	371, 500, 736, 1027
BseXI	GCAGC	5 cut(s)	46, 197, 577, 769, 901
BseYI	CCCAGC	1 cut(s)	629
BsgI	GTGCAG	1 cut(s)	776
BshFI	GGCC	6 cut(s)	263, 546, 640, 655, 770, 828
BshNI	GGYRCC	2 cut(s)	844, 926
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	552, 641, 648
BslFI	GGGAC	3 cut(s)	115, 303, 658
BslI	CCNNNNNNNGG	6 cut(s)	304, 629, 630, 647, 731, 835
BsmAI	GTCTC	3 cut(s)	19, 83, 122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	3 cut(s)	115, 303, 658
BsmI	GAATGC	2 cut(s)	86, 567
BsnI	GGCC	6 cut(s)	263, 546, 640, 655, 770, 828
Bso31I	GGTCTC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	551
Bsp143I	GATC	8 cut(s)	112, 307, 367, 410, 511, 554, 735, 1030
Bsp1720I	GCTNAGC	1 cut(s)	963
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	6 cut(s)	263, 546, 640, 655, 770, 828
BspEI	TCCGGA	1 cut(s)	551
BspLI	GGNNCC	9 cut(s)	195, 412, 646, 676, 717, 747, 769, 846, 928
BspMAI	CTGCAG	1 cut(s)	519
BspMI	ACCTGC	1 cut(s)	712
BspPI	GGATC	7 cut(s)	315, 362, 405, 418, 562, 743, 1025
BspT107I	GGYRCC	2 cut(s)	844, 926
BspTNI	GGTCTC	1 cut(s)	19
BsrI	ACTGG	4 cut(s)	371, 500, 736, 1027
BssECI	CCNNGG	4 cut(s)	246, 641, 1034, 1035
BssMI	GATC	8 cut(s)	112, 307, 367, 410, 511, 554, 735, 1030
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	1036
Bst4CI	ACNGT	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	243, 919
BstDEI	CTNAG	2 cut(s)	6, 963
BstEII	GGTNACC	1 cut(s)	593
BstENI	CCTNNNNNAGG	1 cut(s)	833
BstF5I	GGATG	2 cut(s)	74, 318
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	8 cut(s)	115, 310, 370, 413, 514, 557, 738, 1033
BstMAI	GTCTC	3 cut(s)	19, 83, 122
BstMBI	GATC	8 cut(s)	112, 307, 367, 410, 511, 554, 735, 1030
BstMWI	GCNNNNNNNGC	2 cut(s)	754, 1001
BstNI	CCWGG	1 cut(s)	1036
BstPI	GGTNACC	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	640, 1034
BstSFI	CTRYAG	1 cut(s)	515
BstV1I	GCAGC	5 cut(s)	46, 197, 577, 769, 901
BstV2I	GAAGAC	1 cut(s)	999
BstX2I	RGATCY	3 cut(s)	410, 511, 554
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	3 cut(s)	410, 511, 554
BsuRI	GGCC	6 cut(s)	263, 546, 640, 655, 770, 828
BtgZI	GCGATG	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	74, 318
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	4 cut(s)	30, 264, 624, 729
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	2 cut(s)	243, 919
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	4 cut(s)	638, 645, 675, 768
CseI	GACGC	1 cut(s)	993
Csp6I	GTAC	2 cut(s)	92, 845
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	3 cut(s)	149, 430, 491
CviQI	GTAC	2 cut(s)	92, 845
DdeI	CTNAG	2 cut(s)	6, 963
DpnI	GATC	8 cut(s)	114, 309, 369, 412, 513, 556, 737, 1032
DpnII	GATC	8 cut(s)	112, 307, 367, 410, 511, 554, 735, 1030
EaeI	YGGCCR	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	2 cut(s)	655, 828
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	645, 675
Eco57I	CTGAAG	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	339
Eco91I	GGTNACC	1 cut(s)	593
EcoNI	CCTNNNNNAGG	1 cut(s)	833
EcoO109I	RGGNCCY	1 cut(s)	675
EcoO65I	GGTNACC	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	1034
EcoRV	GATATC	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	152, 433, 494
FalI	AAGNNNNNCTT	2 cut(s)	643, 675
FaqI	GGGAC	3 cut(s)	115, 303, 658
FatI	CATG	3 cut(s)	148, 429, 490
Fnu4HI	GCNGC	6 cut(s)	60, 73, 186, 566, 758, 915
FokI	GGATG	2 cut(s)	81, 305
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	6 cut(s)	60, 73, 186, 566, 758, 915
FspBI	CTAG	2 cut(s)	23, 857
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	6 cut(s)	60, 73, 186, 566, 758, 915
GsaI	CCCAGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	929
HaeIII	GGCC	6 cut(s)	263, 546, 640, 655, 770, 828
HapII	CCGG	3 cut(s)	552, 641, 648
HgaI	GACGC	1 cut(s)	993
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	3 cut(s)	152, 433, 494
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	2 cut(s)	234, 349
HpaII	CCGG	3 cut(s)	552, 641, 648
HphI	GGTGA	4 cut(s)	262, 988, 1000, 1037
Hpy166II	GTNNAC	1 cut(s)	991
Hpy188I	TCNGA	3 cut(s)	205, 367, 415
Hpy188III	TCNNGA	5 cut(s)	346, 552, 558, 796, 890
Hpy8I	GTNNAC	1 cut(s)	991
HpyAV	CCTTC	7 cut(s)	4, 399, 412, 448, 645, 666, 1056
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	8 cut(s)	110, 185, 301, 468, 517, 565, 757, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	754, 1001
HpyF3I	CTNAG	2 cut(s)	6, 963
Hsp92II	CATG	3 cut(s)	152, 433, 494
HspAI	GCGC	1 cut(s)	707
Kpn2I	TCCGGA	1 cut(s)	551
KpnI	GGTACC	1 cut(s)	848
Kzo9I	GATC	8 cut(s)	112, 307, 367, 410, 511, 554, 735, 1030
LmnI	GCTCC	2 cut(s)	745, 853
Lsp1109I	GCAGC	5 cut(s)	46, 197, 577, 769, 901
LweI	GCATC	6 cut(s)	59, 172, 327, 369, 431, 991
MaeI	CTAG	2 cut(s)	23, 857
MaeIII	GTNAC	3 cut(s)	250, 593, 611
MalI	GATC	8 cut(s)	114, 309, 369, 412, 513, 556, 737, 1032
MboI	GATC	8 cut(s)	112, 307, 367, 410, 511, 554, 735, 1030
MboII	GAAGA	4 cut(s)	651, 952, 955, 999
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	3 cut(s)	410, 511, 554
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	5 cut(s)	225, 269, 302, 681, 860
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	49, 253, 592, 688, 904, 979
MroI	TCCGGA	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	655
MspI	CCGG	3 cut(s)	552, 641, 648
MspR9I	CCNGG	2 cut(s)	642, 1036
MunI	CAATTG	1 cut(s)	302
Mva1269I	GAATGC	2 cut(s)	86, 567
MvaI	CCWGG	1 cut(s)	1036
MwoI	GCNNNNNNNGC	2 cut(s)	754, 1001
NciI	CCSGG	1 cut(s)	642
NdeII	GATC	8 cut(s)	112, 307, 367, 410, 511, 554, 735, 1030
NlaIII	CATG	3 cut(s)	152, 433, 494
NlaIV	GGNNCC	9 cut(s)	195, 412, 646, 676, 717, 747, 769, 846, 928
NmuCI	GTSAC	1 cut(s)	250
PaqCI	CACCTGC	1 cut(s)	712
PasI	CCCWGGG	1 cut(s)	1035
PceI	AGGCCT	2 cut(s)	655, 828
PctI	GAATGC	2 cut(s)	86, 567
PdmI	GAANNNNTTC	1 cut(s)	655
PfeI	GAWTC	2 cut(s)	234, 349
PkrI	GCNGC	6 cut(s)	61, 74, 187, 567, 759, 916
PpuMI	RGGWCCY	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	675
Psp6I	CCWGG	1 cut(s)	1034
PspEI	GGTNACC	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	629
PspGI	CCWGG	1 cut(s)	1034
PspN4I	GGNNCC	9 cut(s)	195, 412, 646, 676, 717, 747, 769, 846, 928
PspPI	GGNCC	4 cut(s)	638, 645, 675, 768
PspPPI	RGGWCCY	1 cut(s)	675
PstI	CTGCAG	1 cut(s)	519
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	3 cut(s)	410, 511, 554
RsaI	GTAC	2 cut(s)	93, 846
RsaNI	GTAC	2 cut(s)	92, 845
SatI	GCNGC	6 cut(s)	60, 73, 186, 566, 758, 915
Sau3AI	GATC	8 cut(s)	112, 307, 367, 410, 511, 554, 735, 1030
Sau96I	GGNCC	4 cut(s)	638, 645, 675, 768
ScrFI	CCNGG	2 cut(s)	642, 1036
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	6 cut(s)	59, 172, 327, 369, 431, 991
SfcI	CTRYAG	1 cut(s)	515
SinI	GGWCC	2 cut(s)	645, 675
SmlI	CTYRAG	2 cut(s)	80, 583
SmoI	CTYRAG	2 cut(s)	80, 583
Sse9I	AATT	5 cut(s)	225, 269, 302, 681, 860
SseBI	AGGCCT	2 cut(s)	655, 828
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	2 cut(s)	23, 857
StuI	AGGCCT	2 cut(s)	655, 828
StyD4I	CCNGG	2 cut(s)	640, 1034
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	54
TasI	AATT	5 cut(s)	225, 269, 302, 681, 860
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	234, 349
TscAI	CASTG	4 cut(s)	37, 271, 631, 736
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	5 cut(s)	59, 185, 565, 757, 914
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	6 cut(s)	39, 462, 651, 803, 944, 953
TspRI	CASTG	4 cut(s)	37, 271, 631, 736
VpaK11BI	GGWCC	2 cut(s)	645, 675
XagI	CCTNNNNNAGG	1 cut(s)	833
XapI	RAATTY	2 cut(s)	225, 860
XcmI	CCANNNNNNNNNTGG	2 cut(s)	271, 554
XmnI	GAANNNNTTC	1 cut(s)	655
XspI	CTAG	2 cut(s)	23, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.