Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008168.1

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Forward (+)

21113 .. 21706

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008168.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggtagaagtttcagttgccacccgcgttcaaatcaaaccctttgtttctgcaagcccgcatcttccaatttgtcgcaaaataacatggaaaatttgtggagctgtggcatcatctgattcctcatcttcttctagttgtgggtatagcaggtatgataaacaaacgatagatgatgggcaagtagtattgccaaagaagaagacgaagaagagaaggcgggtgttctttctagatgttaatcctctgtgttatgctggaagtaaacccagcttacactcttttgctcgttgggtttccttgttttttaagcaagttagcctctcggatcctgttatcgctgttgttgatggtgaaggagggagcgagctccgccggcagttgctaccttcatataaaacgcacaggtggaagttgttaagacagttttcaaggggtcatgttggaaggtcacacggagtcatcaaagacgtttttaccaaatgcaatgtgcctgtgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

167

Amino Acids

18.68

Weight (kDa)

10.15

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AccII	CGCG	1 cut(s)	27
AciI	CCGC	4 cut(s)	25, 59, 220, 373
AclWI	GGATC	2 cut(s)	323, 336
AcsI	RAATTY	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	32, 432
AluBI	AGCT	3 cut(s)	104, 273, 370
AluI	AGCT	3 cut(s)	104, 273, 370
Alw21I	GWGCWC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	323, 336
ApoI	RAATTY	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	372
BccI	CCATC	2 cut(s)	170, 344
BfaI	CTAG	2 cut(s)	135, 233
BfuAI	ACCTGC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	330
BmsI	GCATC	2 cut(s)	70, 119
BpiI	GAAGAC	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	493
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	4 cut(s)	25, 59, 220, 373
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	323, 336
BsrDI	GCAATG	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	375
BssMI	GATC	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	4 cut(s)	55, 59, 368, 377
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 376
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	4 cut(s)	55, 59, 368, 377
Cfr10I	RCCGGY	1 cut(s)	375
CviAII	CATG	2 cut(s)	87, 440
CviJI	RGCY	5 cut(s)	57, 104, 273, 321, 370
CviKI_1	RGCY	5 cut(s)	57, 104, 273, 321, 370
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	372
Eco53kI	GAGCTC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	372
FaeI	CATG	2 cut(s)	90, 443
FaiI	YATR	7 cut(s)	88, 147, 156, 255, 394, 396, 441
FatI	CATG	2 cut(s)	86, 439
FauI	CCCGC	3 cut(s)	32, 66, 213
FriOI	GRGCYC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	135, 233
GsaI	CCCAGC	1 cut(s)	273
HapII	CCGG	1 cut(s)	376
Hin1II	CATG	2 cut(s)	90, 443
HinfI	GANTC	2 cut(s)	119, 459
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	118, 328
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	4 cut(s)	210, 350, 399, 441
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	2 cut(s)	53, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 376
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	2 cut(s)	90, 443
KroI	GCCGGC	1 cut(s)	375
KroNI	GCCGGC	1 cut(s)	377
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	101, 363, 375
LpnPI	CCDG	6 cut(s)	136, 243, 283, 345, 389, 391
LweI	GCATC	2 cut(s)	70, 119
MaeI	CTAG	2 cut(s)	135, 233
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	7 cut(s)	56, 120, 123, 211, 214, 220, 223
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	2 cut(s)	69, 93
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	4 cut(s)	133, 255, 332, 353
MroNI	GCCGGC	1 cut(s)	375
MseI	TTAA	4 cut(s)	240, 309, 419, 502
MspI	CCGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	372, 376
NaeI	GCCGGC	1 cut(s)	377
NdeII	GATC	1 cut(s)	328
NgoMIV	GCCGGC	1 cut(s)	375
NlaIII	CATG	2 cut(s)	90, 443
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	450
PdiI	GCCGGC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Psp124BI	GAGCTC	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	4 cut(s)	240, 309, 419, 502
Sau3AI	GATC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	8 cut(s)	106, 155, 275, 372, 391, 410, 452, 474
SfaNI	GCATC	2 cut(s)	70, 119
Sse9I	AATT	2 cut(s)	69, 93
SsiI	CCGC	4 cut(s)	25, 59, 220, 373
SspMI	CTAG	2 cut(s)	135, 233
SstI	GAGCTC	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	426
TaiI	ACGT	1 cut(s)	474
TasI	AATT	2 cut(s)	69, 93
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	4 cut(s)	240, 309, 419, 502
Tru9I	TTAA	4 cut(s)	240, 309, 419, 502
TseFI	GTSAC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	471
XapI	RAATTY	1 cut(s)	93
XbaI	TCTAGA	1 cut(s)	232
XspI	CTAG	2 cut(s)	135, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.