Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Forward (+)

30847083 .. 30849299

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG176200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGTAGAAGTTTCAGTTGCCACCCGCGTTCAAATCAAACCCTTTGTTTCTGCAAGCCCGCATCTTCCAATTTGTCGCAACATAACATGGAAAATTTGTGGAGCTGTGGCATCATCTGATTCCTCATCTTCTTCTAGTTGTGGGTATAGCAGGTATGATAAACAAACGATAGATGATGGGCAAGTAGTATTGCCAAAGAAGAAGAAGAAGAAAAGGAGGGTGTTCTTTCTAGATGTTAATCCTCTGTGTTATGCTGGAAGTAAACCCAGCTTACACTCTTTTGCTCGCTGGGTTTCCTTGTTTTTTAAGCAAGTTAGCCTCTCTGATCCTGTTATCGCTGTTGTTGATGGTGAAAGAGGAAGCGAGCTCCGCCGGCAGTTGCTACCTTCATATAAAACACACAGGTGGAAGTTGTTAAGACAGTTTTCAAGGGGTCATGTTGGAAGGTCACACGGAGTCATCAACGATGTTTTTACAAAATGCAATGTGCCTGTCATAAAAATAGATGGCCATGAAGCTGATGATGTTATAGCTACTCTTGCGGAACAAGTTCTACAAATAGGATATCAAGTGGTGATTGCATCTCCTGATAAAGATTTTAAGCAATTGCTTTCAGAAGATGTCCAAATCGTAATGCCCCTAGATGATTTAAAGCGCTGGTCCTTTTACACCCTTAAGCACTACATGGCTCAGTATAATTGTGATCCGTGCTGTGATTTGAGCCTCAGATGCATTATGGGAGATCAAGCTGATGGTGTTCCTGGGATCCAACATCTGGCTCCTGGGTTTGGTCAGAAGACTGCCCTAAAGCTCTTGAAAAAACATGGCTCATTGGAAAATTTACTAAACATAGCTTCAGTAAGAACTGTGGGCAGACAGTATGCGCAAGATGCTCTTACAAAGTATGCGGATTATCTACGAAGGAACTATGAGATTCTTTCCCTTAGAAGGGATGTCAATGTTCAACTTAAAGAGGAGTGGCTTGTTCCAAGAGACACAAGCAATGATTCAAAAACTTTGTCAAACTTCTTTAAATTCTTGGAAGAAACCGAGAAGTTCAGTCATCAAAGTGGATCTATTTCAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

363

Amino Acids

41.0

Weight (kDa)

9.2

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5_3_exonuc_N	PF02739	92 - 225	1e-21	5'-3' exonuclease, N-terminal resolvase-like domain
5_3_exonuc	PF01367	244 - 329	6e-14	5'-3' exonuclease, C-terminal SAM fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	885
Acc36I	ACCTGC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	775
AccII	CGCG	1 cut(s)	27
AciI	CCGC	5 cut(s)	25, 59, 370, 542, 908
AclWI	GGATC	5 cut(s)	320, 698, 760, 773, 1081
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	3 cut(s)	93, 838, 1034
AcuI	CTGAAG	1 cut(s)	840
AfeI	AGCGCT	1 cut(s)	656
AfiI	CCNNNNNNNGG	4 cut(s)	775, 788, 948, 949
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	6 cut(s)	32, 429, 817, 965, 1011, 1083
AjnI	CCWGG	2 cut(s)	760, 781
AleI	CACNNNNGTG	1 cut(s)	403
AluBI	AGCT	8 cut(s)	104, 270, 367, 518, 533, 749, 811, 854
AluI	AGCT	8 cut(s)	104, 270, 367, 518, 533, 749, 811, 854
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	987
AlwI	GGATC	5 cut(s)	320, 698, 760, 773, 1081
Aor51HI	AGCGCT	1 cut(s)	656
AoxI	GGCC	1 cut(s)	508
ApoI	RAATTY	3 cut(s)	93, 838, 1034
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	2 cut(s)	657, 886
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	2 cut(s)	362, 586
AvaII	GGWCC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	510
BamHI	GGATCC	1 cut(s)	765
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	803
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	4 cut(s)	170, 341, 500, 746
BciT130I	CCWGG	2 cut(s)	762, 783
BcoDI	GTCTC	1 cut(s)	987
BfaI	CTAG	3 cut(s)	135, 230, 641
BfoI	RGCGCY	1 cut(s)	658
BfrI	CTTAAG	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	141
Bme1390I	CCNGG	2 cut(s)	762, 783
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	2 cut(s)	767, 780
BmrFI	CCNGG	2 cut(s)	762, 783
BmsI	GCATC	5 cut(s)	70, 119, 590, 719, 880
BpiI	GAAGAC	1 cut(s)	803
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	761, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	775, 788, 948, 949
Bse118I	RCCGGY	1 cut(s)	372
Bse3DI	GCAATG	2 cut(s)	490, 1009
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	762, 783
BseDI	CCNNGG	2 cut(s)	761, 782
BseGI	GGATG	1 cut(s)	958
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	4 cut(s)	775, 788, 948, 949
BseMI	GCAATG	2 cut(s)	490, 1009
BseMII	CTCAG	2 cut(s)	704, 739
BseRI	GAGGAG	1 cut(s)	989
BseYI	CCCAGC	2 cut(s)	266, 288
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	4 cut(s)	775, 788, 948, 949
BsmAI	GTCTC	1 cut(s)	987
BsnI	GGCC	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	5 cut(s)	325, 703, 742, 765, 1073
BspACI	CCGC	5 cut(s)	25, 59, 370, 542, 908
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	703, 738
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	767, 780
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	5 cut(s)	320, 698, 760, 773, 1081
BspTI	CTTAAG	1 cut(s)	674
BsrDI	GCAATG	2 cut(s)	490, 1009
BsrFI	RCCGGY	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	761, 782
BssMI	GATC	5 cut(s)	325, 703, 742, 765, 1073
Bst2UI	CCWGG	2 cut(s)	762, 783
Bst4CI	ACNGT	3 cut(s)	423, 868, 879
BstAFI	CTTAAG	1 cut(s)	674
BstC8I	GCNNGC	5 cut(s)	55, 59, 286, 365, 374
BstDEI	CTNAG	3 cut(s)	690, 725, 944
BstF5I	GGATG	1 cut(s)	958
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	2 cut(s)	657, 886
BstKTI	GATC	5 cut(s)	328, 706, 745, 768, 1076
BstMAI	GTCTC	1 cut(s)	987
BstMBI	GATC	5 cut(s)	325, 703, 742, 765, 1073
BstMWI	GCNNNNNNNGC	5 cut(s)	369, 373, 539, 729, 890
BstNI	CCWGG	2 cut(s)	762, 783
BstSCI	CCNGG	2 cut(s)	760, 781
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	2 cut(s)	765, 1073
BstYI	RGATCY	2 cut(s)	765, 1073
BsuRI	GGCC	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	958
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	5 cut(s)	55, 59, 286, 365, 374
CfoI	GCGC	2 cut(s)	657, 886
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	660
CviAII	CATG	5 cut(s)	87, 437, 512, 685, 824
DdeI	CTNAG	3 cut(s)	690, 725, 944
DpnI	GATC	5 cut(s)	327, 705, 744, 767, 1075
DpnII	GATC	5 cut(s)	325, 703, 742, 765, 1073
DraI	TTTAAA	2 cut(s)	651, 1033
EaeI	YGGCCR	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	660
Eco47III	AGCGCT	1 cut(s)	656
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	840
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	760, 781
EcoRV	GATATC	1 cut(s)	566
EcoT22I	ATGCAT	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	5 cut(s)	90, 440, 515, 688, 827
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FatI	CATG	5 cut(s)	86, 436, 511, 684, 823
FauI	CCCGC	2 cut(s)	32, 66
FokI	GGATG	1 cut(s)	965
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	3 cut(s)	135, 230, 641
FspI	TGCGCA	1 cut(s)	885
GlaI	GCGC	2 cut(s)	656, 885
GsaI	CCCAGC	2 cut(s)	270, 292
HaeII	RGCGCY	1 cut(s)	658
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	1 cut(s)	373
HhaI	GCGC	2 cut(s)	657, 886
Hin1II	CATG	5 cut(s)	90, 440, 515, 688, 827
Hin6I	GCGC	2 cut(s)	655, 884
HinP1I	GCGC	2 cut(s)	655, 884
HinfI	GANTC	4 cut(s)	119, 456, 934, 1007
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	2 cut(s)	362, 586
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	5 cut(s)	118, 325, 616, 728, 795
Hpy188III	TCNNGA	3 cut(s)	230, 587, 814
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	4 cut(s)	396, 438, 915, 942
HpyCH4III	ACNGT	3 cut(s)	423, 868, 879
HpyCH4V	TGCA	4 cut(s)	53, 483, 581, 732
HpyF10VI	GCNNNNNNNGC	5 cut(s)	369, 373, 539, 729, 890
HpyF3I	CTNAG	3 cut(s)	690, 725, 944
Hsp92II	CATG	5 cut(s)	90, 440, 515, 688, 827
HspAI	GCGC	2 cut(s)	655, 884
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Kzo9I	GATC	5 cut(s)	325, 703, 742, 765, 1073
LmnI	GCTCC	3 cut(s)	101, 372, 784
LweI	GCATC	5 cut(s)	70, 119, 590, 719, 880
MaeI	CTAG	3 cut(s)	135, 230, 641
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	5 cut(s)	327, 705, 744, 767, 1075
MboI	GATC	5 cut(s)	325, 703, 742, 765, 1073
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	2 cut(s)	765, 1073
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	6 cut(s)	69, 93, 605, 697, 838, 1034
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	2 cut(s)	421, 793
MnlI	CCTC	7 cut(s)	133, 210, 252, 329, 350, 734, 967
Mox20I	TGGCCA	1 cut(s)	510
Mph1103I	ATGCAT	1 cut(s)	734
MroNI	GCCGGC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
MslI	CAYNNNNRTG	2 cut(s)	403, 1068
Msp20I	TGGCCA	1 cut(s)	510
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	2 cut(s)	762, 783
MunI	CAATTG	1 cut(s)	605
MvaI	CCWGG	2 cut(s)	762, 783
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	369, 373, 539, 729, 890
NaeI	GCCGGC	1 cut(s)	374
NdeII	GATC	5 cut(s)	325, 703, 742, 765, 1073
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	5 cut(s)	90, 440, 515, 688, 827
NlaIV	GGNNCC	2 cut(s)	767, 780
NmuCI	GTSAC	1 cut(s)	447
NsbI	TGCGCA	1 cut(s)	885
NsiI	ATGCAT	1 cut(s)	734
OliI	CACNNNNGTG	1 cut(s)	403
PdiI	GCCGGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	119, 934, 1007
PflMI	CCANNNNNTGG	1 cut(s)	775
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	760, 781
PspFI	CCCAGC	2 cut(s)	266, 288
PspGI	CCWGG	2 cut(s)	760, 781
PspN4I	GGNNCC	2 cut(s)	767, 780
PspPI	GGNCC	1 cut(s)	660
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PsuI	RGATCY	2 cut(s)	765, 1073
RseI	CAYNNNNRTG	2 cut(s)	403, 1068
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
Sau3AI	GATC	5 cut(s)	325, 703, 742, 765, 1073
Sau96I	GGNCC	1 cut(s)	660
SchI	GAGTC	1 cut(s)	465
ScrFI	CCNGG	2 cut(s)	762, 783
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	5 cut(s)	70, 119, 590, 719, 880
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	2 cut(s)	403, 1068
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	6 cut(s)	69, 93, 605, 697, 838, 1034
SsiI	CCGC	5 cut(s)	25, 59, 370, 542, 908
SspMI	CTAG	3 cut(s)	135, 230, 641
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	760, 781
TaaI	ACNGT	3 cut(s)	423, 868, 879
TasI	AATT	6 cut(s)	69, 93, 605, 697, 838, 1034
TfiI	GAWTC	3 cut(s)	119, 934, 1007
Tru1I	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
Tru9I	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
TseFI	GTSAC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	2 cut(s)	378, 528
TspGWI	ACGGA	2 cut(s)	468, 696
Van91I	CCANNNNNTGG	1 cut(s)	775
Vha464I	CTTAAG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	3 cut(s)	93, 838, 1034
XbaI	TCTAGA	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	3 cut(s)	135, 230, 641
Zsp2I	ATGCAT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.