Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Forward (+)

10663730 .. 10668250

Gene Structure 4521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12160.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGTACAAGTTTCAGTTCATATCAATCCCTTTCTTCCTGCAACCCCGCATCTTCCAACCCGTCGAAATCTAACATGGAAAATCAGTGAAGCTAATTCCTCGTCTTCTCCTGCTTCTAGTAGTTGTGGGTATAGCTACGATAAACAAAGGACTGATGGTCAACTAGTATTGCCAAAGAAGAAGAGAAGCCGGGTGTTCTTTCTAGATGTTAATCCTCTGTGCTATGCTGGAAGTAAACCCAGCTTACACTCTTTTGCTAACTGGGTCTCCTTATTTTTCAACCACGTCAGCCTCTCTGACCCTGTCATCGCTGTTGTTGATGGTGAAAGAGGAAGCGAGCACCGCCGGCAGTTGCTGCCTTCGTATAAAACACACAGGTGGAAATTGTCAAGACAGTTTTCAAAAGGTCATGTTGGAAGGTCACATGGACTCATCACTGATGTTTTTACAAAATGCAATGTGCCTGTCATAAAAATAGATGGCCATGAAGCTGATGATGTTATAGCTACTCTTGTGGAACAAGTTCTACAATTAGGATATCAAGCTGTGATTGCGTCTCCTGATAAAGATTTTAAGCAATTGCTTTCAGAGGATGTCCAAATCGTTATGCCCCTGGACGATTTAGAGCGCTGGTCCTTTTACACCCTTAAGCACTACATGGCTCAGTATAATTGTGATCCGTGCTGTGATTTGAGCCTCAGATGCATTGTGGGAGATCAGGCTGATGGTGTTCCTGGGATCCAACATCTGGCTCCTGGGTTTGGTCAGAAGACTGCCCTGAAGCTCTTGAAAAAACATGGCTCATTGGAAAATTTACTGAACATAGCTTCAGTAAGAACTGTGGGCAGACAGTATGCGCAAGATGCTCTTACAAAGTATGCGGATTATCTACGAAGGAACTATGAGATTCTTGCCCTTAGAAGGGATGTCAATGTTCAACTTAAAGAGGAGTGGCTTGTTCCAAGAGACACAAGCAACGATTCAAATACTTTGTCCAACTTCTTTAAATTCTTGGAAGAAACTAAGGAGTTCATTCATCAAAATGGATCTATTTCAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

355

Amino Acids

40.02

Weight (kDa)

8.71

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5_3_exonuc_N	PF02739	83 - 208	5.8e-21	5'-3' exonuclease, N-terminal resolvase-like domain
5_3_exonuc	PF01367	235 - 320	1.3e-13	5'-3' exonuclease, C-terminal SAM fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	858
AccB7I	CCANNNNNTGG	1 cut(s)	748
AciI	CCGC	3 cut(s)	47, 343, 881
AclWI	GGATC	4 cut(s)	671, 733, 746, 1054
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	2 cut(s)	811, 1007
AcuI	CTGAAG	2 cut(s)	800, 813
AfaI	GTAC	1 cut(s)	6
AfeI	AGCGCT	1 cut(s)	629
AfiI	CCNNNNNNNGG	4 cut(s)	748, 761, 921, 922
AflII	CTTAAG	1 cut(s)	647
AgsI	TTSAA	6 cut(s)	280, 402, 790, 938, 984, 1056
AhdI	GACNNNNNGTC	1 cut(s)	156
AhlI	ACTAGT	1 cut(s)	163
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	3 cut(s)	612, 733, 754
AleI	CACNNNNGTG	1 cut(s)	376
AluBI	AGCT	8 cut(s)	92, 135, 243, 491, 506, 545, 784, 827
AluI	AGCT	8 cut(s)	92, 135, 243, 491, 506, 545, 784, 827
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	3 cut(s)	271, 561, 960
AlwI	GGATC	4 cut(s)	671, 733, 746, 1054
AlwNI	CAGNNNCTG	1 cut(s)	355
Aor51HI	AGCGCT	1 cut(s)	629
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	2 cut(s)	811, 1007
ArsI	GACNNNNNNTTYG	2 cut(s)	977, 1009
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	2 cut(s)	630, 859
AspS9I	GGNCC	1 cut(s)	633
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	633
BalI	TGGCCA	1 cut(s)	483
BamHI	GGATCC	1 cut(s)	738
BbsI	GAAGAC	2 cut(s)	96, 776
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	4 cut(s)	149, 314, 473, 719
BciT130I	CCWGG	3 cut(s)	614, 735, 756
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	3 cut(s)	271, 561, 960
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	3 cut(s)	117, 164, 203
BfoI	RGCGCY	1 cut(s)	631
BfrI	CTTAAG	1 cut(s)	647
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	4 cut(s)	191, 614, 735, 756
Bme18I	GGWCC	1 cut(s)	633
BmeRI	GACNNNNNGTC	1 cut(s)	156
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	633
BmiI	GGNNCC	2 cut(s)	740, 753
BmrFI	CCNGG	4 cut(s)	191, 614, 735, 756
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	3 cut(s)	58, 692, 853
BmuI	ACTGGG	1 cut(s)	271
BpiI	GAAGAC	2 cut(s)	96, 776
BpuMI	CCSGG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	3 cut(s)	612, 734, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	4 cut(s)	748, 761, 921, 922
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	614, 735, 756
BseDI	CCNNGG	3 cut(s)	612, 734, 755
BseGI	GGATG	2 cut(s)	598, 931
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	4 cut(s)	748, 761, 921, 922
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	677, 712
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	962
BseXI	GCAGC	1 cut(s)	342
BseYI	CCCAGC	1 cut(s)	239
BshFI	GGCC	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	190, 346
BslI	CCNNNNNNNGG	4 cut(s)	748, 761, 921, 922
BsmAI	GTCTC	3 cut(s)	271, 561, 960
BsmBI	CGTCTC	1 cut(s)	561
BsnI	GGCC	1 cut(s)	483
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	676, 715, 738, 1046
BspACI	CCGC	3 cut(s)	47, 343, 881
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	676, 711
BspLI	GGNNCC	2 cut(s)	740, 753
BspPI	GGATC	4 cut(s)	671, 733, 746, 1054
BspTI	CTTAAG	1 cut(s)	647
BspTNI	GGTCTC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	612, 734, 755
BssMI	GATC	4 cut(s)	676, 715, 738, 1046
Bst2UI	CCWGG	3 cut(s)	614, 735, 756
Bst4CI	ACNGT	3 cut(s)	396, 841, 852
Bst6I	CTCTTC	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	647
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	338, 347
BstDEI	CTNAG	4 cut(s)	663, 698, 917, 1023
BstF5I	GGATG	2 cut(s)	598, 931
BstH2I	RGCGCY	1 cut(s)	631
BstHHI	GCGC	2 cut(s)	630, 859
BstKTI	GATC	4 cut(s)	679, 718, 741, 1049
BstMAI	GTCTC	3 cut(s)	271, 561, 960
BstMBI	GATC	4 cut(s)	676, 715, 738, 1046
BstMWI	GCNNNNNNNGC	6 cut(s)	342, 346, 355, 551, 702, 863
BstNI	CCWGG	3 cut(s)	614, 735, 756
BstSCI	CCNGG	4 cut(s)	189, 612, 733, 754
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	2 cut(s)	96, 776
BstX2I	RGATCY	2 cut(s)	738, 1046
BstYI	RGATCY	2 cut(s)	738, 1046
BsuRI	GGCC	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	598, 931
BtsIMutI	CAGTG	2 cut(s)	91, 435
Cac8I	GCNNGC	2 cut(s)	338, 347
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	2 cut(s)	630, 859
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	633
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	6 cut(s)	75, 410, 425, 485, 658, 797
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	4 cut(s)	663, 698, 917, 1023
DpnI	GATC	4 cut(s)	678, 717, 740, 1048
DpnII	GATC	4 cut(s)	676, 715, 738, 1046
DraI	TTTAAA	1 cut(s)	1006
DriI	GACNNNNNGTC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	176
Eam1105I	GACNNNNNGTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	633
Eco47III	AGCGCT	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	800, 813
EcoRII	CCWGG	3 cut(s)	612, 733, 754
EcoRV	GATATC	1 cut(s)	539
EcoT22I	ATGCAT	1 cut(s)	707
Esp3I	CGTCTC	1 cut(s)	561
FaeI	CATG	6 cut(s)	78, 413, 428, 488, 661, 800
FalI	AAGNNNNNCTT	2 cut(s)	852, 884
FatI	CATG	6 cut(s)	74, 409, 424, 484, 657, 796
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	2 cut(s)	605, 938
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	3 cut(s)	117, 164, 203
FspI	TGCGCA	1 cut(s)	858
GlaI	GCGC	2 cut(s)	629, 858
GluI	GCNGC	1 cut(s)	356
GsaI	CCCAGC	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	631
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	2 cut(s)	190, 346
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	2 cut(s)	630, 859
Hin1II	CATG	6 cut(s)	78, 413, 428, 488, 661, 800
Hin6I	GCGC	2 cut(s)	628, 857
HinP1I	GCGC	2 cut(s)	628, 857
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HinfI	GANTC	3 cut(s)	429, 907, 980
HpaII	CCGG	2 cut(s)	190, 346
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	161, 236
Hpy188I	TCNGA	4 cut(s)	298, 589, 701, 768
Hpy188III	TCNNGA	4 cut(s)	203, 390, 560, 787
Hpy8I	GTNNAC	2 cut(s)	161, 236
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	4 cut(s)	369, 411, 888, 915
HpyCH4III	ACNGT	3 cut(s)	396, 841, 852
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	41, 456, 705
HpyF10VI	GCNNNNNNNGC	6 cut(s)	342, 346, 355, 551, 702, 863
HpyF3I	CTNAG	4 cut(s)	663, 698, 917, 1023
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	6 cut(s)	78, 413, 428, 488, 661, 800
HspAI	GCGC	2 cut(s)	628, 857
KroI	GCCGGC	1 cut(s)	345
KroNI	GCCGGC	1 cut(s)	347
Kzo9I	GATC	4 cut(s)	676, 715, 738, 1046
LmnI	GCTCC	1 cut(s)	757
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	3 cut(s)	58, 692, 853
MaeI	CTAG	3 cut(s)	117, 164, 203
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	4 cut(s)	678, 717, 740, 1048
MboI	GATC	4 cut(s)	676, 715, 738, 1046
MboII	GAAGA	7 cut(s)	26, 44, 96, 190, 193, 781, 1028
MfeI	CAATTG	1 cut(s)	578
MflI	RGATCY	2 cut(s)	738, 1046
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	7 cut(s)	94, 383, 530, 578, 670, 811, 1007
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	4 cut(s)	80, 394, 766, 1020
MnlI	CCTC	7 cut(s)	109, 225, 302, 323, 583, 707, 940
Mox20I	TGGCCA	1 cut(s)	483
Mph1103I	ATGCAT	1 cut(s)	707
MroNI	GCCGGC	1 cut(s)	345
MroXI	GAANNNNTTC	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	5 cut(s)	210, 573, 648, 942, 1005
MslI	CAYNNNNRTG	2 cut(s)	376, 1041
Msp20I	TGGCCA	1 cut(s)	483
MspCI	CTTAAG	1 cut(s)	647
MspI	CCGG	2 cut(s)	190, 346
MspR9I	CCNGG	4 cut(s)	191, 614, 735, 756
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	3 cut(s)	614, 735, 756
MwoI	GCNNNNNNNGC	6 cut(s)	342, 346, 355, 551, 702, 863
NaeI	GCCGGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	4 cut(s)	676, 715, 738, 1046
NgoMIV	GCCGGC	1 cut(s)	345
NlaIII	CATG	6 cut(s)	78, 413, 428, 488, 661, 800
NlaIV	GGNNCC	2 cut(s)	740, 753
NmuCI	GTSAC	1 cut(s)	420
NsbI	TGCGCA	1 cut(s)	858
NsiI	ATGCAT	1 cut(s)	707
OliI	CACNNNNGTG	1 cut(s)	376
PdiI	GCCGGC	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	2 cut(s)	907, 980
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	748
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
Psp6I	CCWGG	3 cut(s)	612, 733, 754
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	3 cut(s)	612, 733, 754
PspN4I	GGNNCC	2 cut(s)	740, 753
PspPI	GGNCC	1 cut(s)	633
PsrI	GAACNNNNNNTAC	2 cut(s)	510, 542
PstNI	CAGNNNCTG	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	738, 1046
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	2 cut(s)	376, 1041
SaqAI	TTAA	5 cut(s)	210, 573, 648, 942, 1005
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	4 cut(s)	676, 715, 738, 1046
Sau96I	GGNCC	1 cut(s)	633
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	4 cut(s)	191, 614, 735, 756
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	3 cut(s)	58, 692, 853
SinI	GGWCC	1 cut(s)	633
SmiMI	CAYNNNNRTG	2 cut(s)	376, 1041
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
SpeI	ACTAGT	1 cut(s)	163
Sse9I	AATT	7 cut(s)	94, 383, 530, 578, 670, 811, 1007
SsiI	CCGC	3 cut(s)	47, 343, 881
SspMI	CTAG	3 cut(s)	117, 164, 203
StyD4I	CCNGG	4 cut(s)	189, 612, 733, 754
TaaI	ACNGT	3 cut(s)	396, 841, 852
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	64
TasI	AATT	7 cut(s)	94, 383, 530, 578, 670, 811, 1007
TfiI	GAWTC	2 cut(s)	907, 980
Tru1I	TTAA	5 cut(s)	210, 573, 648, 942, 1005
Tru9I	TTAA	5 cut(s)	210, 573, 648, 942, 1005
TscAI	CASTG	2 cut(s)	91, 442
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	4 cut(s)	8, 501, 1021, 1025
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	2 cut(s)	91, 442
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	748
Vha464I	CTTAAG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	633
XapI	RAATTY	2 cut(s)	811, 1007
XbaI	TCTAGA	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	3 cut(s)	117, 164, 203
Zsp2I	ATGCAT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.