Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Reverse (-)

3843959 .. 3845232

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGTTTAAATAAGAGTTATCTGCCATACAGGTGCATTGTGGGTGATCACGCTGATGGTGTTCCTGGAATCCAACATCTATCTCCTGGATTTGGTGAGAAGACTGCCCTAAAGCTCTTGAAAAAGCATGGTTCATTGGAAAATCTACTAAACACAGCTGCAGTCAGAACTGTGGGCAGACAGTATGCTCAAGATGCTCTAACAAAACATGCTGATTACCTAAGGAGGAACCACGAGATTCTTTCCCTTAGGAGAAAAAATGAACTAATGTATAACCAACACATTTCACTTTTACAGTGTCATTGTCTAACACACACATGTCCTTTATTCAATATAATCCGTTCTTTACATCAGGATATTGAATTTTTCTCGTATATGCATTACCATGATACAATCTTATTCATTTTTCCAATGCACCTGGCACTCAGATTGTTTAATTCATTACTTATATTCGTCACACGTCTTCTTGATAGAGTTCTACATACCACTAAACAAAGGATTCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

170

Amino Acids

19.69

Weight (kDa)

9.62

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflIII	ACRYGT	2 cut(s)	317, 458
AgsI	TTSAA	3 cut(s)	121, 331, 362
AjiI	CACGTC	1 cut(s)	461
AjnI	CCWGG	3 cut(s)	64, 85, 417
AluBI	AGCT	2 cut(s)	115, 158
AluI	AGCT	2 cut(s)	115, 158
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	56, 107
AxyI	CCTNAGG	2 cut(s)	221, 248
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	107, 455
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	3 cut(s)	66, 87, 419
BclI	TGATCA	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	3 cut(s)	66, 87, 419
BmgBI	CACGTC	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	3 cut(s)	66, 87, 419
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	2 cut(s)	107, 455
BpuEI	CTTGAG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse21I	CCTNAGG	2 cut(s)	221, 248
BseBI	CCWGG	3 cut(s)	66, 87, 419
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	163
BssMI	GATC	1 cut(s)	46
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	3 cut(s)	66, 87, 419
Bst4CI	ACNGT	3 cut(s)	172, 183, 297
BstDEI	CTNAG	3 cut(s)	221, 248, 425
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	3 cut(s)	66, 87, 419
BstNSI	RCATGY	2 cut(s)	212, 321
BstSCI	CCNGG	3 cut(s)	64, 85, 417
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	2 cut(s)	107, 455
Bsu36I	CCTNAGG	2 cut(s)	221, 248
BtrI	CACGTC	1 cut(s)	461
BtsIMutI	CAGTG	1 cut(s)	302
CviAII	CATG	4 cut(s)	128, 209, 318, 386
CviJI	RGCY	2 cut(s)	115, 158
CviKI_1	RGCY	2 cut(s)	115, 158
DdeI	CTNAG	3 cut(s)	221, 248, 425
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DraI	TTTAAA	1 cut(s)	9
Eco81I	CCTNAGG	2 cut(s)	221, 248
EcoRII	CCWGG	3 cut(s)	64, 85, 417
EcoT22I	ATGCAT	1 cut(s)	381
FaeI	CATG	4 cut(s)	131, 212, 321, 389
FatI	CATG	4 cut(s)	127, 208, 317, 385
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	131, 212, 321, 389
HinfI	GANTC	3 cut(s)	69, 238, 499
HphI	GGTGA	2 cut(s)	56, 107
Hpy188I	TCNGA	2 cut(s)	167, 428
Hpy188III	TCNNGA	4 cut(s)	118, 191, 353, 467
HpyCH4III	ACNGT	3 cut(s)	172, 183, 297
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	36, 161, 379, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	3 cut(s)	221, 248, 425
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	4 cut(s)	131, 212, 321, 389
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	16, 51, 72, 78, 99, 338, 404, 431
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	112, 455
MluCI	AATT	2 cut(s)	362, 436
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	1 cut(s)	219
Mph1103I	ATGCAT	1 cut(s)	381
MseI	TTAA	2 cut(s)	8, 435
MslI	CAYNNNNRTG	4 cut(s)	31, 54, 316, 384
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	3 cut(s)	66, 87, 419
MvaI	CCWGG	3 cut(s)	66, 87, 419
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	131, 212, 321, 389
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	381
NspI	RCATGY	2 cut(s)	212, 321
PciI	ACATGT	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	69, 238, 499
PfoI	TCCNGGA	2 cut(s)	64, 85
PkrI	GCNGC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	317
Psp6I	CCWGG	3 cut(s)	64, 85, 417
PspGI	CCWGG	3 cut(s)	64, 85, 417
PspN4I	GGNNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	158
RseI	CAYNNNNRTG	4 cut(s)	31, 54, 316, 384
SaqAI	TTAA	2 cut(s)	8, 435
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	46
ScrFI	CCNGG	3 cut(s)	66, 87, 419
SetI	ASST	6 cut(s)	35, 117, 160, 222, 420, 463
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	4 cut(s)	31, 54, 316, 384
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	2 cut(s)	362, 436
StyD4I	CCNGG	3 cut(s)	64, 85, 417
TaaI	ACNGT	3 cut(s)	172, 183, 297
TaiI	ACGT	1 cut(s)	463
TasI	AATT	2 cut(s)	362, 436
TfiI	GAWTC	3 cut(s)	69, 238, 499
Tru1I	TTAA	2 cut(s)	8, 435
Tru9I	TTAA	2 cut(s)	8, 435
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	4 cut(s)	123, 276, 391, 429
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	2 cut(s)	212, 321
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.