Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Reverse (-)

3847276 .. 3848317

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTAGAAGTAGCAGTTCCCACCCGCGTTCATATCAGACCCCTTCTTTCTGTAAGCCCACATCTTCCAATTCGTAGTAATATAGTGTCAACAAATACAAAAGCATGCAAGATTCGTGGAGTTGCAAATTCTTCTTCTTCGTCTTCTTCTTCCTCTTCTTCCACTAGTACTTGTGGGTATAAACAACCGGTTGATGATGGACAAATAGTGTTGCCAAACAAGGCAAGCAAGAACAGGGTCTTCTTTTTAGACGTCAATCCTCTCTGTTATGCAGGAAGCAGTCCCAGCTTACACGCTTTTGCTCATTGGGTCTCCTTATTTCTCAATCAAGTTAGCCTATCCGACCCTGTTATTGCTGTTGTTGATGGGGAAGGAGGAAGTGAGCACCGCAGACAGTTATTACCATCTTATAAAGCACATAGGTGGAAATTCATAAGACAGTTTTCAAGGGGGCATGTTGGAAGGTCACATGGAGTCATCACCAATGTTCTTCGGAAATGCAATGTGCCTGTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

173

Amino Acids

18.72

Weight (kDa)

10.24

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AatII	GACGTC	1 cut(s)	255
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	25, 388
AcsI	RAATTY	2 cut(s)	127, 428
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	169
AgeI	ACCGGT	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	447
AhlI	ACTAGT	1 cut(s)	164
AleI	CACNNNNGTG	1 cut(s)	421
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	127, 428
AsiGI	ACCGGT	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	472
BbsI	GAAGAC	2 cut(s)	135, 232
Bbv12I	GWGCWC	1 cut(s)	387
BccI	CCATC	3 cut(s)	191, 359, 412
BcoDI	GTCTC	1 cut(s)	316
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	1 cut(s)	165
BmcAI	AGTACT	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	135, 232
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	187
Bse118I	RCCGGY	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	508
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	27
BshTI	ACCGGT	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	387
BspACI	CCGC	2 cut(s)	25, 388
BspFNI	CGCG	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	396, 441
Bst6I	CTCTTC	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	106, 226
BstFNI	CGCG	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	108, 458
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	2 cut(s)	135, 232
Cac8I	GCNNGC	2 cut(s)	106, 226
Cfr10I	RCCGGY	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	168
CspAI	ACCGGT	1 cut(s)	187
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	3 cut(s)	105, 455, 470
CviJI	RGCY	3 cut(s)	57, 288, 336
CviKI_1	RGCY	3 cut(s)	57, 288, 336
CviQI	GTAC	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	316
FaeI	CATG	3 cut(s)	108, 458, 473
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	3 cut(s)	104, 454, 469
FauI	CCCGC	1 cut(s)	32
FspBI	CTAG	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	288
HapII	CCGG	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	108, 458, 473
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	112, 474
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	3 cut(s)	38, 343, 495
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	53, 365, 456
HpyCH4III	ACNGT	2 cut(s)	396, 441
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	108, 125, 272, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	108, 458, 473
LpnPI	CCDG	5 cut(s)	201, 220, 258, 298, 360
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	3 cut(s)	69, 127, 428
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	2 cut(s)	366, 439
MnlI	CCTC	3 cut(s)	163, 270, 368
MslI	CAYNNNNRTG	1 cut(s)	421
MspI	CCGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	285
NlaIII	CATG	3 cut(s)	108, 458, 473
NmuCI	GTSAC	1 cut(s)	465
NspI	RCATGY	2 cut(s)	108, 458
OliI	CACNNNNGTG	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	112
PinAI	ACCGGT	1 cut(s)	187
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PsiI	TTATAA	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	284
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	421
ScaI	AGTACT	1 cut(s)	169
SchI	GAGTC	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	4 cut(s)	255, 290, 425, 467
SmiMI	CAYNNNNRTG	1 cut(s)	421
SpeI	ACTAGT	1 cut(s)	164
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	3 cut(s)	69, 127, 428
SsiI	CCGC	2 cut(s)	25, 388
SspMI	CTAG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	396, 441
TaiI	ACGT	1 cut(s)	255
TasI	AATT	3 cut(s)	69, 127, 428
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	20, 421
XapI	RAATTY	2 cut(s)	127, 428
XceI	RCATGY	2 cut(s)	108, 458
XspI	CTAG	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.