Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Reverse (-)

6473262 .. 6476983

Gene Structure 3722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G055700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGTAGAAGTTGCAGTTCCTACCCGAGTTCATATCACGCCCTTTCTTTCTGTAAGCTCATATCTTCCCATTTGTCGCAAAATAGTGGTGACAAAAGTAGCAAGGAAGATTTCTGGAGTTGTGGCATCTTCTTCTTCAACTTTTTCTACTTCTTCTGGTTTTGGGTCTAAACAAAAGGTTGATGATGGGCAAGTCCTGTTACCAAAGAAGACAAGCAAAAAAAGGGTGTTCTTTTTAGACGTTAATCCTCTTTGTTATGAAGGAAGCAAACCCAGCTTACAATCTTTTGCTCATTGGGTCTCCTTGTTTTTCAATCAAGTTAGCCTCTCTGACCCTGTTATTGCTGTCGTTGATGGGGAAAGAGGAAGTGAACACCGCAGACAGTTATTACCTTCATATAAAGCACATAGGTGGAAGTTCTTGAGACAGTTTTCAAAGGGGCATGTTGGAAGGTCACATGGAGTCATCACAAATGTTCTTAGAAAATGCAATGTGCCAGAGATCTGGGAAGGAGTAGACACTTTAAAACAGGTCATAAAAATAGAAGGCCATGAAGCTGACGATGTTATAGCCACACTTGTGGGGCAAGTTCTACAGTCAGGATATCGGGTGGTAATTGCATCTCCTGATAAAGATTTTAAGCAATTGCTTTCAGAAGATGTTCAACTTGTCATTCCCCTGGAAGAGTTGGAACGCTGGTCCTTTTACACCCTTAAGCACTACATGGCTCAGTATAATTGTGATCCGTGCTGTGATTTGAGCCTTAGGTGCATTGTTGGTGATCAGGCTGATGGTGTTCCTGGGATCCAACATCTGGCTCCCGGTTTTGGTCAGAAGACTGCCCTAAAGCTCATAAAAAAGCATGGTTCATTGGAAAATCTACTAAAGACAGCTGCAGTCAGAACTGTGGGCAGACAGTATGCTCAAGATGCTCTTACAAAACATGCTGATTACCTAAGGAGGAACTACGAGATTCTTTCCCTTAGGAGGGATGTCGATATTCGACTTAGAGAGGAGTGGTTAGTTAAGAGAGACACAAGCAACGATTCAAGAACGTTGTCTAACTTCTTTAAATTCTTGGAAGAAACCCAAAAGTTCAGTCATTATAATGTATCTGTCTCAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

377

Amino Acids

42.45

Weight (kDa)

9.35

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1107
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	1 cut(s)	376
AclI	AACGTT	1 cut(s)	1055
AclWI	GGATC	3 cut(s)	737, 799, 812
AcsI	RAATTY	1 cut(s)	1073
AfiI	CCNNNNNNNGG	4 cut(s)	814, 827, 987, 988
AflII	CTTAAG	1 cut(s)	713
AgsI	TTSAA	5 cut(s)	138, 313, 435, 665, 1050
AjnI	CCWGG	2 cut(s)	678, 799
AleI	CACNNNNGTG	2 cut(s)	409, 578
AluBI	AGCT	5 cut(s)	57, 276, 557, 850, 893
AluI	AGCT	5 cut(s)	57, 276, 557, 850, 893
Alw26I	GTCTC	4 cut(s)	304, 418, 1026, 1123
AlwI	GGATC	3 cut(s)	737, 799, 812
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	893
ApoI	RAATTY	1 cut(s)	1073
ArsI	GACNNNNNNTTYG	2 cut(s)	1084, 1116
Asp700I	GAANNNNTTC	1 cut(s)	660
AspS9I	GGNCC	1 cut(s)	699
AsuC2I	CCSGG	1 cut(s)	822
AsuHPI	GGTGA	2 cut(s)	100, 791
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	699
AxyI	CCTNAGG	3 cut(s)	764, 956, 983
BamHI	GGATCC	1 cut(s)	804
BbsI	GAAGAC	2 cut(s)	215, 842
BbvI	GCAGC	1 cut(s)	880
BccI	CCATC	3 cut(s)	179, 347, 785
BciT130I	CCWGG	2 cut(s)	680, 801
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	822
BcoDI	GTCTC	4 cut(s)	304, 418, 1026, 1123
BfmI	CTRYAG	2 cut(s)	593, 894
BfrI	CTTAAG	1 cut(s)	713
BglII	AGATCT	1 cut(s)	501
BisI	GCNGC	1 cut(s)	894
BlsI	GCNGC	1 cut(s)	895
Bme1390I	CCNGG	3 cut(s)	680, 801, 822
Bme18I	GGWCC	1 cut(s)	699
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	2 cut(s)	806, 819
BmrFI	CCNGG	3 cut(s)	680, 801, 822
BmsI	GCATC	3 cut(s)	134, 629, 919
BpiI	GAAGAC	2 cut(s)	215, 842
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	442, 909
BpuMI	CCSGG	1 cut(s)	822
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	678, 800
Bsc4I	CCNNNNNNNGG	4 cut(s)	814, 827, 987, 988
Bse21I	CCTNAGG	3 cut(s)	764, 956, 983
Bse3DI	GCAATG	1 cut(s)	496
BseBI	CCWGG	2 cut(s)	680, 801
BseDI	CCNNGG	2 cut(s)	678, 800
BseGI	GGATG	1 cut(s)	997
BseLI	CCNNNNNNNGG	4 cut(s)	814, 827, 987, 988
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	743
BseRI	GAGGAG	1 cut(s)	1028
BseXI	GCAGC	1 cut(s)	880
BseYI	CCCAGC	1 cut(s)	272
BshFI	GGCC	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	822
BslI	CCNNNNNNNGG	4 cut(s)	814, 827, 987, 988
BsmAI	GTCTC	4 cut(s)	304, 418, 1026, 1123
BsnI	GGCC	1 cut(s)	549
Bso31I	GGTCTC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	4 cut(s)	501, 742, 781, 804
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	742
BspLI	GGNNCC	2 cut(s)	806, 819
BspMAI	CTGCAG	1 cut(s)	898
BspPI	GGATC	3 cut(s)	737, 799, 812
BspTI	CTTAAG	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	678, 800
BssMI	GATC	4 cut(s)	501, 742, 781, 804
Bst2UI	CCWGG	2 cut(s)	680, 801
Bst4CI	ACNGT	5 cut(s)	384, 429, 597, 907, 918
Bst6I	CTCTTC	1 cut(s)	678
BstAFI	CTTAAG	1 cut(s)	713
BstDEI	CTNAG	6 cut(s)	479, 729, 764, 956, 983, 1007
BstF5I	GGATG	1 cut(s)	997
BstKTI	GATC	4 cut(s)	504, 745, 784, 807
BstMAI	GTCTC	4 cut(s)	304, 418, 1026, 1123
BstMBI	GATC	4 cut(s)	501, 742, 781, 804
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 768, 929
BstNI	CCWGG	2 cut(s)	680, 801
BstNSI	RCATGY	2 cut(s)	446, 947
BstSCI	CCNGG	3 cut(s)	678, 799, 820
BstSFI	CTRYAG	2 cut(s)	593, 894
BstV1I	GCAGC	1 cut(s)	880
BstV2I	GAAGAC	2 cut(s)	215, 842
BstX2I	RGATCY	2 cut(s)	501, 804
BstXI	CCANNNNNNTGG	2 cut(s)	504, 580
BstYI	RGATCY	2 cut(s)	501, 804
Bsu36I	CCTNAGG	3 cut(s)	764, 956, 983
BsuRI	GGCC	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	997
Cfr13I	GGNCC	1 cut(s)	699
CviAII	CATG	6 cut(s)	443, 458, 551, 724, 863, 944
DdeI	CTNAG	6 cut(s)	479, 729, 764, 956, 983, 1007
DpnI	GATC	4 cut(s)	503, 744, 783, 806
DpnII	GATC	4 cut(s)	501, 742, 781, 804
DraI	TTTAAA	2 cut(s)	525, 1072
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Eco31I	GGTCTC	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	699
Eco81I	CCTNAGG	3 cut(s)	764, 956, 983
Eco88I	CYCGRG	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	678, 799
EcoRV	GATATC	1 cut(s)	605
FaeI	CATG	6 cut(s)	446, 461, 554, 727, 866, 947
FalI	AAGNNNNNCTT	2 cut(s)	918, 950
FatI	CATG	6 cut(s)	442, 457, 550, 723, 862, 943
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	1 cut(s)	894
FokI	GGATG	1 cut(s)	1004
Fsp4HI	GCNGC	1 cut(s)	894
GluI	GCNGC	1 cut(s)	894
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	1 cut(s)	822
Hin1II	CATG	6 cut(s)	446, 461, 554, 727, 866, 947
HinfI	GANTC	3 cut(s)	462, 973, 1046
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	2 cut(s)	100, 791
Hpy166II	GTNNAC	2 cut(s)	371, 517
Hpy188I	TCNGA	4 cut(s)	331, 655, 834, 902
Hpy188III	TCNNGA	6 cut(s)	114, 421, 600, 626, 926, 1050
Hpy8I	GTNNAC	2 cut(s)	371, 517
HpyAV	CCTTC	5 cut(s)	254, 402, 444, 503, 539
HpyCH4III	ACNGT	5 cut(s)	384, 429, 597, 907, 918
HpyCH4IV	ACGT	2 cut(s)	240, 1055
HpyCH4V	TGCA	5 cut(s)	14, 489, 620, 771, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 768, 929
HpyF3I	CTNAG	6 cut(s)	479, 729, 764, 956, 983, 1007
HpySE526I	ACGT	2 cut(s)	240, 1055
Hsp92II	CATG	6 cut(s)	446, 461, 554, 727, 866, 947
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	501, 742, 781, 804
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	1 cut(s)	880
LweI	GCATC	3 cut(s)	134, 629, 919
MaeII	ACGT	2 cut(s)	240, 1055
MaeIII	GTNAC	3 cut(s)	88, 198, 453
MalI	GATC	4 cut(s)	503, 744, 783, 806
MboI	GATC	4 cut(s)	501, 742, 781, 804
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	2 cut(s)	501, 804
MluCI	AATT	4 cut(s)	615, 644, 736, 1073
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	3 cut(s)	427, 669, 832
MnlI	CCTC	6 cut(s)	258, 335, 356, 954, 981, 1006
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	6 cut(s)	243, 524, 639, 714, 1026, 1071
MslI	CAYNNNNRTG	3 cut(s)	409, 578, 1107
MspA1I	CMGCKG	1 cut(s)	893
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	3 cut(s)	680, 801, 822
MunI	CAATTG	1 cut(s)	644
MvaI	CCWGG	2 cut(s)	680, 801
MwoI	GCNNNNNNNGC	3 cut(s)	273, 768, 929
NciI	CCSGG	1 cut(s)	822
NdeII	GATC	4 cut(s)	501, 742, 781, 804
NlaIII	CATG	6 cut(s)	446, 461, 554, 727, 866, 947
NlaIV	GGNNCC	2 cut(s)	806, 819
NmuCI	GTSAC	2 cut(s)	88, 453
NspI	RCATGY	2 cut(s)	446, 947
OliI	CACNNNNGTG	2 cut(s)	409, 578
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	2 cut(s)	973, 1046
PflMI	CCANNNNNTGG	1 cut(s)	814
PkrI	GCNGC	1 cut(s)	895
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	1107
Psp1406I	AACGTT	1 cut(s)	1055
Psp6I	CCWGG	2 cut(s)	678, 799
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	678, 799
PspN4I	GGNNCC	2 cut(s)	806, 819
PspPI	GGNCC	1 cut(s)	699
PstI	CTGCAG	1 cut(s)	898
PsuI	RGATCY	2 cut(s)	501, 804
PvuII	CAGCTG	1 cut(s)	893
RseI	CAYNNNNRTG	3 cut(s)	409, 578, 1107
SaqAI	TTAA	6 cut(s)	243, 524, 639, 714, 1026, 1071
SatI	GCNGC	1 cut(s)	894
Sau3AI	GATC	4 cut(s)	501, 742, 781, 804
Sau96I	GGNCC	1 cut(s)	699
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	3 cut(s)	680, 801, 822
SfaNI	GCATC	3 cut(s)	134, 629, 919
SfcI	CTRYAG	2 cut(s)	593, 894
SinI	GGWCC	1 cut(s)	699
SmiMI	CAYNNNNRTG	3 cut(s)	409, 578, 1107
SmlI	CTYRAG	3 cut(s)	421, 713, 924
SmoI	CTYRAG	3 cut(s)	421, 713, 924
Sse9I	AATT	4 cut(s)	615, 644, 736, 1073
SsiI	CCGC	1 cut(s)	376
StyD4I	CCNGG	3 cut(s)	678, 799, 820
TaaI	ACNGT	5 cut(s)	384, 429, 597, 907, 918
TaiI	ACGT	2 cut(s)	243, 1058
TaqI	TCGA	2 cut(s)	996, 1003
TasI	AATT	4 cut(s)	615, 644, 736, 1073
TfiI	GAWTC	2 cut(s)	973, 1046
Tru1I	TTAA	6 cut(s)	243, 524, 639, 714, 1026, 1071
Tru9I	TTAA	6 cut(s)	243, 524, 639, 714, 1026, 1071
TseFI	GTSAC	2 cut(s)	88, 453
TseI	GCWGC	1 cut(s)	893
Tsp45I	GTSAC	2 cut(s)	88, 453
TspDTI	ATGAA	5 cut(s)	20, 273, 384, 567, 858
TspGWI	ACGGA	1 cut(s)	735
Van91I	CCANNNNNTGG	1 cut(s)	814
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	1 cut(s)	699
XapI	RAATTY	1 cut(s)	1073
XceI	RCATGY	2 cut(s)	446, 947
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.