Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010378

Physical Location & Seq

Genomic Coordinates Forward (+)

16484231 .. 16486327

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G43700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAAGGAGGAGGAAGAGGACCAAATCAAACGATTCTCAGTGAAATAGAACATATGCCTGAAGCTCCACGTCAACGTATCTCTCATCACCGTCGAGCTCGCTCTGAAACCTTCTTCTCCGGCGAATCAATCGACGATCTCCTCTTATTCGATCCTTCCGATATCGATTTCTCTTCTCTAGACTTCCTCAACGCTCCACCACCACCACAACAATCACAACAACAACCGCAAGCTTCTCCCATGTCCGTTGATTCGGAAGAAACCTCATCGAACGGTGTTGTTCCTCCTAATTCTCTTCCTCCAAAACCCGAAGCTAGATTCGGTCGCCATGTTCGTAGCTTCTCGGTTGATTCCGATTTCTTCGATGATTTGGGTGTTACTGAGGAGAAGTTTATAGCTACAAGTTCAGGAGAGAAGAAGAAAGGGAATCATCATCATAGCAGGAGTAATTCTATGGATGGAGAGATGAGTTCGGCGTCGTTTAATATCGAATCGATTTTAGCTTCTGTGAGTGGTAAAGATAGTGGGAAGAAGAATATGGGTATGGGTGGTGATAGACTTGCTGAGCTTGCTTTGCTTGATCCTAAAAGAGCTAAAAGGATTTTAGCGAATAGACAATCTGCGGCGAGGTCGAAAGAGAGGAAGATTAGGTATACTGGTGAGTTAGAGAGGAAGGTTCAGACACTTCAGAATGAAGCTACTACATTGTCTGCTCAAGTCACTATGTTACAGAGAGGAACATCAGAGCTGAACACTGAAAATAAACACCTCAAAATGCGGCTTCAAGCTTTAGAGCAACAAGCTGAACTTAGGGATGCTTTGAATGAAGCGCTGCGGGATGAACTGAACCGACTTAAGGTGGTAGCTGGAGAAATTCCTCAGGGGAATGGAAATTCTTACAACCGTGCTCAATTCTCATCTCAGCAATCGGCAATGAATCAGTTTGGGAACAAAACGAACCAACAGATGAGTACAAACGGGCAGCCATCGCTCCCAAGCTACATGGATTTCACCAAGAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

341

Amino Acids

37.79

Weight (kDa)

6.74

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	194 - 245	8.4e-08	Basic region leucine zipper
bZIP_1	PF00170	196 - 254	5.5e-08	bZIP transcription factor
ATG16	PF08614	217 - 287	5e-06	Autophagy protein 16 (ATG16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43700
fragaria_vesca	FvH4_2g14020 FvH4_2g14020
malus_domestica	MD05G1022300.v1.1 MD10G1023800.v1.1
prunus_persica	Prupe.8G026300_v2.0.a1
pyrus_communis	pycom05g01310 pycom10g01570
rosa_chinensis	RchiOBHm_Chr6g0275921
rosa_laevigata	RLG00000013423
rosa_multiflora	Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004
rosa_roxburghii	Rroxscaffold_7G00192770
rosa_rugosa	Rorug06G0097400 Rorug06G0097500 Rorug06G0097600
rosa_samantha	Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400
rosa_wichuraiana	Rw6G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	653
AciI	CCGC	4 cut(s)	227, 623, 778, 835
AclWI	GGATC	2 cut(s)	146, 575
AcsI	RAATTY	2 cut(s)	873, 892
AcuI	CTGAAG	2 cut(s)	81, 671
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	1 cut(s)	973
AfeI	AGCGCT	1 cut(s)	831
AfiI	CCNNNNNNNGG	1 cut(s)	856
AflII	CTTAAG	1 cut(s)	854
AgsI	TTSAA	2 cut(s)	785, 823
AjiI	CACGTC	1 cut(s)	71
Alw21I	GWGCWC	2 cut(s)	100, 910
AlwI	GGATC	2 cut(s)	146, 575
Aor51HI	AGCGCT	1 cut(s)	831
ApeKI	GCWGC	2 cut(s)	832, 982
ApoI	RAATTY	2 cut(s)	873, 892
AspLEI	GCGC	1 cut(s)	832
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	4 cut(s)	80, 563, 671, 1003
AvaII	GGWCC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	100, 910
BbvI	GCAGC	2 cut(s)	819, 994
BccI	CCATC	2 cut(s)	452, 994
BfaI	CTAG	2 cut(s)	179, 315
BfoI	RGCGCY	1 cut(s)	833
BfrI	CTTAAG	1 cut(s)	854
BisI	GCNGC	4 cut(s)	624, 779, 833, 983
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	4 cut(s)	625, 780, 834, 984
Bme18I	GGWCC	1 cut(s)	20
BmgBI	CACGTC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	20
BmsI	GCATC	1 cut(s)	805
BpmI	CTGGAG	1 cut(s)	888
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	699
Bsa29I	ATCGAT	2 cut(s)	165, 494
BsaHI	GRCGYC	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	1 cut(s)	856
Bse1I	ACTGG	1 cut(s)	661
Bse21I	CCTNAGG	1 cut(s)	879
Bse3DI	GCAATG	1 cut(s)	939
BseCI	ATCGAT	2 cut(s)	165, 494
BseGI	GGATG	3 cut(s)	463, 820, 844
BseLI	CCNNNNNNNGG	1 cut(s)	856
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	5 cut(s)	52, 372, 555, 893, 935
BseNI	ACTGG	1 cut(s)	661
BseRI	GAGGAG	3 cut(s)	24, 131, 398
BseXI	GCAGC	2 cut(s)	819, 994
Bsh1285I	CGRYCG	1 cut(s)	325
BshVI	ATCGAT	2 cut(s)	165, 494
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	100, 910
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	856
Bsp1286I	GDGCHC	2 cut(s)	100, 910
Bsp143I	GATC	3 cut(s)	136, 151, 580
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	4 cut(s)	227, 623, 778, 835
BspCNI	CTCAG	5 cut(s)	51, 373, 556, 892, 934
BspDI	ATCGAT	2 cut(s)	165, 494
BspPI	GGATC	2 cut(s)	146, 575
BspTI	CTTAAG	1 cut(s)	854
BsrDI	GCAATG	1 cut(s)	939
BsrI	ACTGG	1 cut(s)	661
BssMI	GATC	3 cut(s)	136, 151, 580
BssNAI	GTATAC	1 cut(s)	654
BssNI	GRCGYC	1 cut(s)	476
Bst1107I	GTATAC	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	92, 275, 905
Bst6I	CTCTTC	3 cut(s)	10, 178, 300
BstACI	GRCGYC	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	854
BstC8I	GCNNGC	3 cut(s)	100, 231, 570
BstDEI	CTNAG	6 cut(s)	38, 381, 564, 809, 879, 921
BstF5I	GGATG	3 cut(s)	463, 820, 844
BstH2I	RGCGCY	1 cut(s)	833
BstHHI	GCGC	1 cut(s)	832
BstKTI	GATC	3 cut(s)	139, 154, 583
BstMBI	GATC	3 cut(s)	136, 151, 580
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 574, 988
BstV1I	GCAGC	2 cut(s)	819, 994
BstZ17I	GTATAC	1 cut(s)	654
Bsu15I	ATCGAT	2 cut(s)	165, 494
Bsu36I	CCTNAGG	1 cut(s)	879
BsuTUI	ATCGAT	2 cut(s)	165, 494
BtgZI	GCGATG	1 cut(s)	972
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	463, 820, 844
BtsIMutI	CAGTG	2 cut(s)	46, 753
Cac8I	GCNNGC	3 cut(s)	100, 231, 570
CfoI	GCGC	1 cut(s)	832
Cfr13I	GGNCC	1 cut(s)	20
ClaI	ATCGAT	2 cut(s)	165, 494
CseI	GACGC	1 cut(s)	465
Csp6I	GTAC	1 cut(s)	972
CviAII	CATG	3 cut(s)	241, 329, 1003
CviQI	GTAC	1 cut(s)	972
DdeI	CTNAG	6 cut(s)	38, 381, 564, 809, 879, 921
DpnI	GATC	3 cut(s)	138, 153, 582
DpnII	GATC	3 cut(s)	136, 151, 580
Eam1104I	CTCTTC	3 cut(s)	10, 178, 300
EarI	CTCTTC	3 cut(s)	10, 178, 300
Ecl136II	GAGCTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	20
Eco47III	AGCGCT	1 cut(s)	831
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	81, 671
Eco81I	CCTNAGG	1 cut(s)	879
EcoICRI	GAGCTC	1 cut(s)	98
EcoRV	GATATC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	3 cut(s)	244, 332, 1006
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FatI	CATG	3 cut(s)	240, 328, 1002
FauI	CCCGC	1 cut(s)	828
FauNDI	CATATG	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	4 cut(s)	624, 779, 833, 983
FokI	GGATG	3 cut(s)	470, 827, 851
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	4 cut(s)	624, 779, 833, 983
FspBI	CTAG	2 cut(s)	179, 315
GlaI	GCGC	1 cut(s)	831
GluI	GCNGC	4 cut(s)	624, 779, 833, 983
GsuI	CTGGAG	1 cut(s)	888
HaeII	RGCGCY	1 cut(s)	833
HapII	CCGG	1 cut(s)	120
HgaI	GACGC	1 cut(s)	465
HhaI	GCGC	1 cut(s)	832
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	3 cut(s)	244, 332, 1006
Hin6I	GCGC	1 cut(s)	830
HinP1I	GCGC	1 cut(s)	830
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HindIII	AAGCTT	2 cut(s)	231, 786
HinfI	GANTC	8 cut(s)	34, 125, 251, 318, 350, 427, 491, 937
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	4 cut(s)	80, 563, 671, 1003
Hpy166II	GTNNAC	2 cut(s)	74, 654
Hpy188I	TCNGA	7 cut(s)	106, 160, 256, 355, 681, 690, 745
Hpy188III	TCNNGA	2 cut(s)	179, 408
Hpy8I	GTNNAC	2 cut(s)	74, 654
Hpy99I	CGWCG	3 cut(s)	96, 137, 481
HpyAV	CCTTC	3 cut(s)	121, 165, 667
HpyCH4III	ACNGT	3 cut(s)	92, 275, 905
HpyCH4IV	ACGT	2 cut(s)	70, 76
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 574, 988
HpyF3I	CTNAG	6 cut(s)	38, 381, 564, 809, 879, 921
HpySE526I	ACGT	2 cut(s)	70, 76
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	3 cut(s)	244, 332, 1006
HspAI	GCGC	1 cut(s)	830
Kzo9I	GATC	3 cut(s)	136, 151, 580
LmnI	GCTCC	3 cut(s)	70, 199, 996
LpnPI	CCDG	7 cut(s)	72, 133, 393, 427, 642, 852, 866
Lsp1109I	GCAGC	2 cut(s)	819, 994
LweI	GCATC	1 cut(s)	805
MaeI	CTAG	2 cut(s)	179, 315
MaeII	ACGT	2 cut(s)	70, 76
MaeIII	GTNAC	3 cut(s)	376, 718, 726
MalI	GATC	3 cut(s)	138, 153, 582
MboI	GATC	3 cut(s)	136, 151, 580
MhlI	GDGCHC	2 cut(s)	100, 910
MluCI	AATT	5 cut(s)	289, 448, 873, 892, 911
MseI	TTAA	2 cut(s)	483, 855
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	569, 574, 988
NdeI	CATATG	1 cut(s)	54
NdeII	GATC	3 cut(s)	136, 151, 580
NlaIII	CATG	3 cut(s)	244, 332, 1006
NmuCI	GTSAC	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 331
PfeI	GAWTC	8 cut(s)	34, 125, 251, 318, 350, 427, 491, 937
PkrI	GCNGC	4 cut(s)	625, 780, 834, 984
Psp124BI	GAGCTC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	973
RsaNI	GTAC	1 cut(s)	972
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	483, 855
SatI	GCNGC	4 cut(s)	624, 779, 833, 983
Sau3AI	GATC	3 cut(s)	136, 151, 580
Sau96I	GGNCC	1 cut(s)	20
SduI	GDGCHC	2 cut(s)	100, 910
SfaNI	GCATC	1 cut(s)	805
SinI	GGWCC	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	714, 854
SmoI	CTYRAG	2 cut(s)	714, 854
Sse9I	AATT	5 cut(s)	289, 448, 873, 892, 911
SsiI	CCGC	4 cut(s)	227, 623, 778, 835
SspMI	CTAG	2 cut(s)	179, 315
SstI	GAGCTC	1 cut(s)	100
TaaI	ACNGT	3 cut(s)	92, 275, 905
TaiI	ACGT	2 cut(s)	73, 79
TaqI	TCGA	9 cut(s)	94, 132, 150, 165, 269, 363, 489, 494, 632
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	5 cut(s)	289, 448, 873, 892, 911
TatI	WGTACW	1 cut(s)	971
TauI	GCSGC	2 cut(s)	626, 781
TfiI	GAWTC	8 cut(s)	34, 125, 251, 318, 350, 427, 491, 937
Tru1I	TTAA	2 cut(s)	483, 855
Tru9I	TTAA	2 cut(s)	483, 855
TscAI	CASTG	2 cut(s)	46, 760
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	2 cut(s)	832, 982
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	4 cut(s)	708, 840, 855, 950
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	2 cut(s)	46, 760
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	2 cut(s)	873, 892
XbaI	TCTAGA	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	653
XspI	CTAG	2 cut(s)	179, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.