Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010378

Physical Location & Seq

Genomic Coordinates Reverse (-)

34096747 .. 34100854

Gene Structure 4108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGACGGCTCCTTTGATTCTGAGCTCTCTCTCGATGGGCTCAAGAAGTCCATAACTCCTGATAAGCTGGCTGAGCTCTCTCTGATTGACCCTAAGAGAGCTAAAAGGATCTTAGCTAATAGACAATCTGCTGCGAGGTCCAAGGAGAGGAAGGTGAGATATGCAAATGAGCTGGAGCGGAAGGTGCAGACGCTTCAGACAGAGGCAACCACCCTATCGGCACAGGTCACACTGTTACAGAGAGACACTACTGCAATAACTGCTGAAAATAAGGAGCTCAAAATTCGGCTACAGTCTATGGAGCAACAAGCACAGCTGAGAGATGCCTTGAATGAAAAATTAAAGGAGGAAGTGGAGCGGCTTAAGATTGAAACCAGCCAAATCCCCCATGGGAGTGGAAACCCCTTCTACAGAGGGCTCCCCCTCAATATGCGCCGCCCCAGTCTGCCTTGCATAATCAGCTGGGTGGTAGCCAGAACCAGAACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAGCTTCACGTGCTTCACAACCAGAACGTCAACGGGCAGCCTCACCCGAGTTTCATGGACTTCAACCAGAGGGCGTAGAAGCTCTATTTTAAGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

205

Amino Acids

23.01

Weight (kDa)

10.27

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	30 - 81	2.2e-07	Basic region leucine zipper
bZIP_1	PF00170	32 - 79	7.5e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43700
fragaria_vesca	FvH4_2g14020 FvH4_2g14020
malus_domestica	MD05G1022300.v1.1 MD10G1023800.v1.1
prunus_persica	Prupe.8G026300_v2.0.a1
pyrus_communis	pycom05g01310 pycom10g01570
rosa_chinensis	RchiOBHm_Chr6g0275921
rosa_laevigata	RLG00000013423
rosa_multiflora	Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004
rosa_roxburghii	Rroxscaffold_7G00192770
rosa_rugosa	Rorug06G0097400 Rorug06G0097500 Rorug06G0097600
rosa_samantha	Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400
rosa_wichuraiana	Rw6G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	178, 358
AciI	CCGC	3 cut(s)	178, 358, 436
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	179
AcvI	CACGTG	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	331, 371, 582
Alw21I	GWGCWC	3 cut(s)	27, 78, 279
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	564
ApeKI	GCWGC	3 cut(s)	131, 519, 555
ApoI	RAATTY	1 cut(s)	282
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	166, 553
AvaI	CYCGRG	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	138
BanII	GRGCYC	5 cut(s)	27, 42, 78, 279, 420
BbrPI	CACGTG	1 cut(s)	528
Bbv12I	GWGCWC	3 cut(s)	27, 78, 279
BbvI	GCAGC	3 cut(s)	118, 531, 567
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	237
BfmI	CTRYAG	2 cut(s)	290, 409
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	5 cut(s)	132, 359, 436, 520, 556
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	5 cut(s)	133, 360, 437, 521, 557
Bme18I	GGWCC	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	564
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	10, 419
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	194
Bpu1102I	GCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	141, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	141, 388
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	3 cut(s)	12, 63, 308
BseNI	ACTGG	1 cut(s)	441
BseXI	GCAGC	3 cut(s)	118, 531, 567
BseYI	CCCAGC	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	206
BsiHKAI	GWGCWC	3 cut(s)	27, 78, 279
BsiHKCI	CYCGRG	1 cut(s)	564
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	564
Bsp1286I	GDGCHC	5 cut(s)	27, 42, 78, 279, 420
Bsp143I	GATC	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	72
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	3 cut(s)	178, 358, 436
BspCNI	CTCAG	3 cut(s)	13, 64, 309
BspLI	GGNNCC	2 cut(s)	10, 419
BspPI	GGATC	1 cut(s)	116
BspTI	CTTAAG	1 cut(s)	362
BsrBI	CCGCTC	2 cut(s)	178, 358
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	141, 388
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	141, 388
Bst4CI	ACNGT	2 cut(s)	234, 294
BstAFI	CTTAAG	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	5 cut(s)	21, 72, 93, 112, 317
BstDSI	CCRYGG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	6 cut(s)	73, 184, 260, 459, 519, 528
BstSFI	CTRYAG	2 cut(s)	290, 409
BstV1I	GCAGC	3 cut(s)	118, 531, 567
BstX2I	RGATCY	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	1 cut(s)	199
CviAII	CATG	2 cut(s)	389, 573
DdeI	CTNAG	5 cut(s)	21, 72, 93, 112, 317
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Ecl136II	GAGCTC	3 cut(s)	25, 76, 277
Eco130I	CCWWGG	2 cut(s)	141, 388
Eco24I	GRGCYC	5 cut(s)	27, 42, 78, 279, 420
Eco47I	GGWCC	1 cut(s)	138
Eco53kI	GAGCTC	3 cut(s)	25, 76, 277
Eco57I	CTGAAG	1 cut(s)	179
Eco72I	CACGTG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	564
EcoICRI	GAGCTC	3 cut(s)	25, 76, 277
EcoT14I	CCWWGG	2 cut(s)	141, 388
EcoT38I	GRGCYC	5 cut(s)	27, 42, 78, 279, 420
ErhI	CCWWGG	2 cut(s)	141, 388
FaeI	CATG	2 cut(s)	392, 576
FaiI	YATR	7 cut(s)	53, 162, 299, 390, 431, 455, 574
FatI	CATG	2 cut(s)	388, 572
Fnu4HI	GCNGC	5 cut(s)	132, 359, 436, 520, 556
FriOI	GRGCYC	5 cut(s)	27, 42, 78, 279, 420
Fsp4HI	GCNGC	5 cut(s)	132, 359, 436, 520, 556
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	5 cut(s)	132, 359, 436, 520, 556
GsaI	CCCAGC	1 cut(s)	466
GsuI	CTGGAG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	392, 576
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	166, 553
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	3 cut(s)	22, 84, 198
Hpy188III	TCNNGA	3 cut(s)	32, 43, 59
Hpy8I	GTNNAC	1 cut(s)	549
HpyAV	CCTTC	3 cut(s)	145, 175, 415
HpyCH4III	ACNGT	2 cut(s)	234, 294
HpyCH4IV	ACGT	2 cut(s)	527, 545
HpyCH4V	TGCA	4 cut(s)	164, 187, 254, 453
HpyF10VI	GCNNNNNNNGC	6 cut(s)	73, 184, 260, 459, 519, 528
HpyF3I	CTNAG	5 cut(s)	21, 72, 93, 112, 317
HpySE526I	ACGT	2 cut(s)	527, 545
Hsp92II	CATG	2 cut(s)	392, 576
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	6 cut(s)	14, 175, 274, 301, 355, 423
Lsp1109I	GCAGC	3 cut(s)	118, 531, 567
LweI	GCATC	1 cut(s)	313
MaeII	ACGT	2 cut(s)	527, 545
MaeIII	GTNAC	2 cut(s)	226, 234
MalI	GATC	1 cut(s)	110
MbiI	CCGCTC	2 cut(s)	178, 358
MboI	GATC	1 cut(s)	108
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	5 cut(s)	27, 42, 78, 279, 420
MluCI	AATT	2 cut(s)	282, 338
MnlI	CCTC	8 cut(s)	129, 141, 196, 340, 407, 434, 569, 581
MseI	TTAA	4 cut(s)	341, 363, 608, 616
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	316, 462
MspCI	CTTAAG	1 cut(s)	362
MwoI	GCNNNNNNNGC	6 cut(s)	73, 184, 260, 459, 519, 528
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	392, 576
NlaIV	GGNNCC	2 cut(s)	10, 419
NmuCI	GTSAC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	5 cut(s)	133, 360, 437, 521, 557
PmaCI	CACGTG	1 cut(s)	528
PmlI	CACGTG	1 cut(s)	528
Ppu21I	YACGTR	1 cut(s)	528
Psp124BI	GAGCTC	3 cut(s)	27, 78, 279
PspCI	CACGTG	1 cut(s)	528
PspFI	CCCAGC	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	10, 419
PspPI	GGNCC	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	108
PvuII	CAGCTG	2 cut(s)	316, 462
RseI	CAYNNNNRTG	1 cut(s)	393
SacI	GAGCTC	3 cut(s)	27, 78, 279
SaqAI	TTAA	4 cut(s)	341, 363, 608, 616
SatI	GCNGC	5 cut(s)	132, 359, 436, 520, 556
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	138
SduI	GDGCHC	5 cut(s)	27, 42, 78, 279, 420
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	2 cut(s)	290, 409
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	41, 362
SmoI	CTYRAG	2 cut(s)	41, 362
Sse9I	AATT	2 cut(s)	282, 338
SsiI	CCGC	3 cut(s)	178, 358, 436
SstI	GAGCTC	3 cut(s)	27, 78, 279
StyI	CCWWGG	2 cut(s)	141, 388
TaaI	ACNGT	2 cut(s)	234, 294
TaiI	ACGT	2 cut(s)	530, 548
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	282, 338
TauI	GCSGC	2 cut(s)	361, 438
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	4 cut(s)	341, 363, 608, 616
Tru9I	TTAA	4 cut(s)	341, 363, 608, 616
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	3 cut(s)	131, 519, 555
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	348, 561
TspRI	CASTG	1 cut(s)	237
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.