RLG00000013423
BZIP Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
31315847 .. 31319640
3794 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013423

Sequence Viewer

Length: 1071 bp
ATGGATTCCAACAGCAACCACAGCTTCACCTCACCCACCTCCTCAAACGACATTGAGCAGATGCCGGAGACTCCCCACCGCGGTGGGTCCTACCACCGCCGCGCCCACTCCGACTTCTCCTCCTTCCGCCTCCCCAACTTCGACGACCTCCTCCTCTTCGACCCTTCCGACCTCGACCTCTCCTCTTTCCCCTCCCCCTCCCCCTCCCCCTCTCCCGTCGCCCCGCCACGTGGCACCACCACCACCACCCCCGCCAACTCCAACTCCAACACCAACTCCGCCGCAGCCGTCCCCATGCCGATCGACTCCGACGACTCCTCCGCCTCCCGCCCCAGGCCCAGCTCCTCCTCCGGCCCCAGCGCCGCCGCCGCGCATTTCCGCAGCCTCTCCGTCGACTCCGACTTCTTCGACGGCCTCGCGCTCGCCGGAGACGCCGCCGGGAAGGAAGTCGTTGGGGGTAAGAGGGCCGGCGGCGGCCACCACAGGCATAGCAACTCCATGGACGGCTCCTTTGATTCTGAGCTCTCTCTCGATGGGCTCAAGAAGTCCATAACTCCTGATAAGCTGGCTGAGCTCTCTCTGATTGACCCTAAGAGAGCTAAAAGGATCTTAGCTAATAGACAATCTGCTGCGAGGTCCAAGGAGAGGAAGGTGAGATATGCAAATGAGCTGGAGAGGAAGGTGCAGACGCTTCAGACAGAGGCAACCACCCTATCGGCACAGGTCACACTGTTACAGAGAGACACTACTGCAATAACTGCTGAAAATAAGGAGCTCAAAATTCGGCTACAGGCTATGGAGCAACAAGCACAGCTGAGAGATGCCTTGAATGAAAAATTGAAGGAGGAAGTGGAGCGGCTTAAGATTGAAACCAGCCAAATCCCCCATGGGAGTGGAAACCCTTTCTACAGAGGGCTCCCCCCTCAATATGCGCCGCCCCAGTCTGCCTTGCATAATCAGCTGGGTGGTAGCCAGAGCCAGCACCAGCACCAGCAGCTTCACGTGCTTCACAACCAGAACGTCAACGGGCAGCCTCACCCGAGTTTCATGGACTTCAACCAGAGGGCGTAG

Protein Analysis

357

Amino Acids

38.74

Weight (kDa)

6.74

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 196 - 247 5.5e-07 Basic region leucine zipper
bZIP_1 PF00170 198 - 246 1.6e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AccBSI CCGCTC 1 cut(s) 856
AccI GTMKAC 1 cut(s) 393
AccII CGCG 4 cut(s) 81, 102, 371, 419
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 1 cut(s) 475
AcsI RAATTY 1 cut(s) 780
AcuI CTGAAG 1 cut(s) 677
AcvI CACGTG 2 cut(s) 230, 1003
AcyI GRCGYC 1 cut(s) 432
AfiI CCNNNNNNNGG 4 cut(s) 80, 230, 333, 645
AflII CTTAAG 1 cut(s) 860
AgsI TTSAA 4 cut(s) 829, 841, 869, 1057
AjnI CCWGG 1 cut(s) 332
AleI CACNNNNGTG 1 cut(s) 81
Alw21I GWGCWC 3 cut(s) 525, 576, 777
Alw26I GTCTC 3 cut(s) 62, 423, 735
AlwI GGATC 1 cut(s) 614
Ama87I CYCGRG 1 cut(s) 1039
AoxI GGCC 5 cut(s) 335, 352, 412, 465, 475
ApeKI GCWGC 5 cut(s) 284, 381, 629, 994, 1030
ApoI RAATTY 1 cut(s) 780
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AspLEI GCGC 5 cut(s) 104, 362, 373, 421, 934
AspS9I GGNCC 5 cut(s) 87, 336, 353, 465, 636
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 4 cut(s) 19, 24, 664, 1028
AvaI CYCGRG 1 cut(s) 1039
AvaII GGWCC 2 cut(s) 87, 636
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 5 cut(s) 525, 540, 576, 777, 918
BbrPI CACGTG 2 cut(s) 230, 1003
Bbv12I GWGCWC 3 cut(s) 525, 576, 777
BbvI GCAGC 5 cut(s) 296, 393, 616, 1006, 1042
BccI CCATC 1 cut(s) 527
BceAI ACGGC 3 cut(s) 272, 427, 520
BciT130I CCWGG 1 cut(s) 334
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 62, 423, 735
BfmI CTRYAG 2 cut(s) 788, 907
BfoI RGCGCY 1 cut(s) 363
BfrI CTTAAG 1 cut(s) 860
BlpI GCTNAGC 1 cut(s) 570
Bme1390I CCNGG 2 cut(s) 334, 439
Bme18I GGWCC 2 cut(s) 87, 636
BmeT110I CYCGRG 1 cut(s) 1039
BmgT120I GGNCC 5 cut(s) 87, 336, 353, 465, 636
BmiI GGNNCC 5 cut(s) 88, 235, 355, 508, 917
BmrFI CCNGG 2 cut(s) 334, 439
BmrI ACTGGG 1 cut(s) 934
BmsI GCATC 2 cut(s) 51, 811
BmuI ACTGGG 1 cut(s) 934
BpmI CTGGAG 1 cut(s) 692
Bpu1102I GCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 439
BsaAI YACGTR 2 cut(s) 230, 1003
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 5 cut(s) 79, 332, 498, 639, 886
BsaXI ACNNNNNCTCC 8 cut(s) 104, 134, 248, 260, 278, 290, 302, 332
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 230, 333, 645
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 940
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 5 cut(s) 79, 332, 498, 639, 886
BseLI CCNNNNNNNGG 4 cut(s) 80, 230, 333, 645
BseMII CTCAG 3 cut(s) 510, 561, 806
BseNI ACTGG 1 cut(s) 940
BseRI GAGGAG 8 cut(s) 31, 109, 140, 143, 172, 307, 334, 337
BseXI GCAGC 5 cut(s) 296, 393, 616, 1006, 1042
BseYI CCCAGC 3 cut(s) 338, 356, 961
BsgI GTGCAG 1 cut(s) 704
Bsh1236I CGCG 4 cut(s) 81, 102, 371, 419
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 5 cut(s) 337, 354, 414, 467, 477
BshNI GGYRCC 1 cut(s) 233
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 3 cut(s) 525, 576, 777
BsiHKCI CYCGRG 1 cut(s) 1039
BsiSI CCGG 5 cut(s) 65, 351, 426, 438, 468
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 4 cut(s) 80, 230, 333, 645
BsmAI GTCTC 3 cut(s) 62, 423, 735
BsmBI CGTCTC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 5 cut(s) 337, 354, 414, 467, 477
BsoBI CYCGRG 1 cut(s) 1039
Bsp1286I GDGCHC 5 cut(s) 525, 540, 576, 777, 918
Bsp143I GATC 2 cut(s) 300, 606
Bsp1720I GCTNAGC 1 cut(s) 570
Bsp19I CCATGG 2 cut(s) 498, 886
BspANI GGCC 5 cut(s) 337, 354, 414, 467, 477
BspCNI CTCAG 3 cut(s) 511, 562, 807
BspFNI CGCG 4 cut(s) 81, 102, 371, 419
BspLI GGNNCC 5 cut(s) 88, 235, 355, 508, 917
BspPI GGATC 1 cut(s) 614
BspT107I GGYRCC 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 860
BsrBI CCGCTC 1 cut(s) 856
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 1 cut(s) 940
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 5 cut(s) 79, 332, 498, 639, 886
BssMI GATC 2 cut(s) 300, 606
BssNI GRCGYC 1 cut(s) 432
BssT1I CCWWGG 3 cut(s) 498, 639, 886
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 732
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 432
BstAFI CTTAAG 1 cut(s) 860
BstAPI GCANNNNNTGC 1 cut(s) 758
BstBAI YACGTR 2 cut(s) 230, 1003
BstC8I GCNNGC 4 cut(s) 423, 469, 567, 980
BstDEI CTNAG 5 cut(s) 519, 570, 591, 610, 815
BstDSI CCRYGG 3 cut(s) 79, 498, 886
BstFNI CGCG 4 cut(s) 81, 102, 371, 419
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 5 cut(s) 104, 362, 373, 421, 934
BstKTI GATC 2 cut(s) 303, 609
BstMAI GTCTC 3 cut(s) 62, 423, 735
BstMBI GATC 2 cut(s) 300, 606
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 8 cut(s) 21, 368, 431, 571, 758, 958, 994, 1003
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 332, 437
BstSFI CTRYAG 2 cut(s) 788, 907
BstUI CGCG 4 cut(s) 81, 102, 371, 419
BstV1I GCAGC 5 cut(s) 296, 393, 616, 1006, 1042
BstX2I RGATCY 1 cut(s) 606
BstXI CCANNNNNNTGG 2 cut(s) 83, 893
BstYI RGATCY 1 cut(s) 606
BsuRI GGCC 5 cut(s) 337, 354, 414, 467, 477
BtgI CCRYGG 3 cut(s) 79, 498, 886
BtsIMutI CAGTG 1 cut(s) 728
Cac8I GCNNGC 4 cut(s) 423, 469, 567, 980
CfoI GCGC 5 cut(s) 104, 362, 373, 421, 934
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 5 cut(s) 87, 336, 353, 465, 636
Cfr42I CCGCGG 1 cut(s) 82
CseI GACGC 2 cut(s) 440, 697
CviAII CATG 4 cut(s) 295, 499, 887, 1048
DdeI CTNAG 5 cut(s) 519, 570, 591, 610, 815
DpnI GATC 2 cut(s) 302, 608
DpnII GATC 2 cut(s) 300, 606
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 3 cut(s) 116, 268, 310
Ecl136II GAGCTC 3 cut(s) 523, 574, 775
Eco130I CCWWGG 3 cut(s) 498, 639, 886
Eco24I GRGCYC 5 cut(s) 525, 540, 576, 777, 918
Eco47I GGWCC 2 cut(s) 87, 636
Eco53kI GAGCTC 3 cut(s) 523, 574, 775
Eco57I CTGAAG 1 cut(s) 677
Eco72I CACGTG 2 cut(s) 230, 1003
Eco88I CYCGRG 1 cut(s) 1039
EcoICRI GAGCTC 3 cut(s) 523, 574, 775
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 3 cut(s) 498, 639, 886
EcoT38I GRGCYC 5 cut(s) 525, 540, 576, 777, 918
ErhI CCWWGG 3 cut(s) 498, 639, 886
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 4 cut(s) 298, 502, 890, 1051
FaqI GGGAC 1 cut(s) 275
FatI CATG 4 cut(s) 294, 498, 886, 1047
FauI CCCGC 3 cut(s) 231, 259, 335
FblI GTMKAC 1 cut(s) 393
FriOI GRGCYC 5 cut(s) 525, 540, 576, 777, 918
GlaI GCGC 5 cut(s) 103, 361, 372, 420, 933
GsaI CCCAGC 3 cut(s) 342, 360, 965
GsuI CTGGAG 1 cut(s) 692
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 5 cut(s) 337, 354, 414, 467, 477
HapII CCGG 5 cut(s) 65, 351, 426, 438, 468
HgaI GACGC 2 cut(s) 440, 697
HhaI GCGC 5 cut(s) 104, 362, 373, 421, 934
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 4 cut(s) 298, 502, 890, 1051
Hin6I GCGC 5 cut(s) 102, 360, 371, 419, 932
HinP1I GCGC 5 cut(s) 102, 360, 371, 419, 932
HincII GTYRAC 2 cut(s) 394, 1024
HindII GTYRAC 2 cut(s) 394, 1024
HinfI GANTC 6 cut(s) 5, 70, 305, 314, 395, 515
HpaII CCGG 5 cut(s) 65, 351, 426, 438, 468
HphI GGTGA 4 cut(s) 19, 24, 664, 1028
Hpy166II GTNNAC 2 cut(s) 394, 1024
Hpy188I TCNGA 7 cut(s) 112, 169, 310, 400, 520, 582, 696
Hpy188III TCNNGA 3 cut(s) 530, 541, 557
Hpy8I GTNNAC 2 cut(s) 394, 1024
Hpy99I CGWCG 5 cut(s) 146, 221, 314, 395, 413
HpyAV CCTTC 6 cut(s) 133, 174, 436, 643, 673, 835
HpyCH4III ACNGT 1 cut(s) 732
HpyCH4IV ACGT 3 cut(s) 229, 1002, 1020
HpyCH4V TGCA 4 cut(s) 662, 685, 752, 952
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 368, 431, 571, 758, 958, 994, 1003
HpyF3I CTNAG 5 cut(s) 519, 570, 591, 610, 815
HpySE526I ACGT 3 cut(s) 229, 1002, 1020
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 4 cut(s) 298, 502, 890, 1051
HspAI GCGC 5 cut(s) 102, 360, 371, 419, 932
KroI GCCGGC 1 cut(s) 467
KroNI GCCGGC 1 cut(s) 469
KspI CCGCGG 1 cut(s) 82
Kzo9I GATC 2 cut(s) 300, 606
LmnI GCTCC 6 cut(s) 347, 512, 772, 799, 853, 921
Lsp1109I GCAGC 5 cut(s) 296, 393, 616, 1006, 1042
LweI GCATC 2 cut(s) 51, 811
MaeII ACGT 3 cut(s) 229, 1002, 1020
MaeIII GTNAC 2 cut(s) 724, 732
MalI GATC 2 cut(s) 302, 608
MbiI CCGCTC 1 cut(s) 856
MboI GATC 2 cut(s) 300, 606
MboII GAAGA 2 cut(s) 148, 397
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 5 cut(s) 525, 540, 576, 777, 918
MluCI AATT 2 cut(s) 780, 836
MlyI GAGTC 4 cut(s) 64, 299, 308, 389
MmeI TCCRAC 7 cut(s) 33, 135, 192, 285, 291, 333, 423
MroNI GCCGGC 1 cut(s) 467
MseI TTAA 1 cut(s) 861
MslI CAYNNNNRTG 2 cut(s) 81, 891
MspA1I CMGCKG 3 cut(s) 81, 814, 961
MspCI CTTAAG 1 cut(s) 860
MspI CCGG 5 cut(s) 65, 351, 426, 438, 468
MspR9I CCNGG 2 cut(s) 334, 439
MvaI CCWGG 1 cut(s) 334
MvnI CGCG 4 cut(s) 81, 102, 371, 419
MwoI GCNNNNNNNGC 8 cut(s) 21, 368, 431, 571, 758, 958, 994, 1003
NaeI GCCGGC 1 cut(s) 469
NciI CCSGG 1 cut(s) 439
NcoI CCATGG 2 cut(s) 498, 886
NdeII GATC 2 cut(s) 300, 606
NgoMIV GCCGGC 1 cut(s) 467
NlaIII CATG 4 cut(s) 298, 502, 890, 1051
NlaIV GGNNCC 5 cut(s) 88, 235, 355, 508, 917
NmuCI GTSAC 1 cut(s) 724
OliI CACNNNNGTG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 309
PdiI GCCGGC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 5, 515
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 4 cut(s) 64, 299, 308, 389
PmaCI CACGTG 2 cut(s) 230, 1003
PmlI CACGTG 2 cut(s) 230, 1003
PpsI GAGTC 4 cut(s) 64, 299, 308, 389
Ppu21I YACGTR 2 cut(s) 230, 1003
PpuMI RGGWCCY 1 cut(s) 87
Psp124BI GAGCTC 3 cut(s) 525, 576, 777
Psp5II RGGWCCY 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 332
PspCI CACGTG 2 cut(s) 230, 1003
PspFI CCCAGC 3 cut(s) 338, 356, 961
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 5 cut(s) 88, 235, 355, 508, 917
PspPI GGNCC 5 cut(s) 87, 336, 353, 465, 636
PspPPI RGGWCCY 1 cut(s) 87
PsuI RGATCY 1 cut(s) 606
PvuI CGATCG 1 cut(s) 303
PvuII CAGCTG 2 cut(s) 814, 961
RseI CAYNNNNRTG 2 cut(s) 81, 891
SacI GAGCTC 3 cut(s) 525, 576, 777
SacII CCGCGG 1 cut(s) 82
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 861
Sau3AI GATC 2 cut(s) 300, 606
Sau96I GGNCC 5 cut(s) 87, 336, 353, 465, 636
SchI GAGTC 4 cut(s) 64, 299, 308, 389
ScrFI CCNGG 2 cut(s) 334, 439
SduI GDGCHC 5 cut(s) 525, 540, 576, 777, 918
SfaNI GCATC 2 cut(s) 51, 811
SfcI CTRYAG 2 cut(s) 788, 907
Sfr303I CCGCGG 1 cut(s) 82
SgrBI CCGCGG 1 cut(s) 82
SinI GGWCC 2 cut(s) 87, 636
SmiMI CAYNNNNRTG 2 cut(s) 81, 891
SmlI CTYRAG 2 cut(s) 539, 860
SmoI CTYRAG 2 cut(s) 539, 860
Sse9I AATT 2 cut(s) 780, 836
SstI GAGCTC 3 cut(s) 525, 576, 777
StyD4I CCNGG 2 cut(s) 332, 437
StyI CCWWGG 3 cut(s) 498, 639, 886
TaaI ACNGT 1 cut(s) 732
TaiI ACGT 3 cut(s) 232, 1005, 1023
TaqI TCGA 7 cut(s) 141, 159, 174, 303, 393, 408, 531
TasI AATT 2 cut(s) 780, 836
TfiI GAWTC 2 cut(s) 5, 515
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 5 cut(s) 284, 381, 629, 994, 1030
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 2 cut(s) 846, 1036
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 1 cut(s) 735
Vha464I CTTAAG 1 cut(s) 860
VpaK11BI GGWCC 2 cut(s) 87, 636
XapI RAATTY 1 cut(s) 780
XcmI CCANNNNNNNNNTGG 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.