Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G43700 |
| fragaria_vesca | FvH4_2g14020 FvH4_2g14020 |
| malus_domestica | MD05G1022300.v1.1 MD10G1023800.v1.1 |
| prunus_persica | Prupe.8G026300_v2.0.a1 |
| pyrus_communis | pycom05g01310 pycom10g01570 |
| rosa_chinensis | RchiOBHm_Chr6g0275921 |
| rosa_laevigata | RLG00000013423 |
| rosa_multiflora | Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004 |
| rosa_roxburghii | Rroxscaffold_7G00192770 |
| rosa_rugosa | Rorug06G0097400 Rorug06G0097500 Rorug06G0097600 |
| rosa_samantha | Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400 |
| rosa_wichuraiana | Rw6G018220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 233 |
| AccBSI | CCGCTC | 1 cut(s) | 856 |
| AccI | GTMKAC | 1 cut(s) | 393 |
| AccII | CGCG | 4 cut(s) | 81, 102, 371, 419 |
| AclWI | GGATC | 1 cut(s) | 614 |
| AcoI | YGGCCR | 1 cut(s) | 475 |
| AcsI | RAATTY | 1 cut(s) | 780 |
| AcuI | CTGAAG | 1 cut(s) | 677 |
| AcvI | CACGTG | 2 cut(s) | 230, 1003 |
| AcyI | GRCGYC | 1 cut(s) | 432 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 80, 230, 333, 645 |
| AflII | CTTAAG | 1 cut(s) | 860 |
| AgsI | TTSAA | 4 cut(s) | 829, 841, 869, 1057 |
| AjnI | CCWGG | 1 cut(s) | 332 |
| AleI | CACNNNNGTG | 1 cut(s) | 81 |
| Alw21I | GWGCWC | 3 cut(s) | 525, 576, 777 |
| Alw26I | GTCTC | 3 cut(s) | 62, 423, 735 |
| AlwI | GGATC | 1 cut(s) | 614 |
| Ama87I | CYCGRG | 1 cut(s) | 1039 |
| AoxI | GGCC | 5 cut(s) | 335, 352, 412, 465, 475 |
| ApeKI | GCWGC | 5 cut(s) | 284, 381, 629, 994, 1030 |
| ApoI | RAATTY | 1 cut(s) | 780 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 494, 526 |
| AspLEI | GCGC | 5 cut(s) | 104, 362, 373, 421, 934 |
| AspS9I | GGNCC | 5 cut(s) | 87, 336, 353, 465, 636 |
| AsuC2I | CCSGG | 1 cut(s) | 439 |
| AsuHPI | GGTGA | 4 cut(s) | 19, 24, 664, 1028 |
| AvaI | CYCGRG | 1 cut(s) | 1039 |
| AvaII | GGWCC | 2 cut(s) | 87, 636 |
| BanI | GGYRCC | 1 cut(s) | 233 |
| BanII | GRGCYC | 5 cut(s) | 525, 540, 576, 777, 918 |
| BbrPI | CACGTG | 2 cut(s) | 230, 1003 |
| Bbv12I | GWGCWC | 3 cut(s) | 525, 576, 777 |
| BbvI | GCAGC | 5 cut(s) | 296, 393, 616, 1006, 1042 |
| BccI | CCATC | 1 cut(s) | 527 |
| BceAI | ACGGC | 3 cut(s) | 272, 427, 520 |
| BciT130I | CCWGG | 1 cut(s) | 334 |
| BcnI | CCSGG | 1 cut(s) | 439 |
| BcoDI | GTCTC | 3 cut(s) | 62, 423, 735 |
| BfmI | CTRYAG | 2 cut(s) | 788, 907 |
| BfoI | RGCGCY | 1 cut(s) | 363 |
| BfrI | CTTAAG | 1 cut(s) | 860 |
| BlpI | GCTNAGC | 1 cut(s) | 570 |
| Bme1390I | CCNGG | 2 cut(s) | 334, 439 |
| Bme18I | GGWCC | 2 cut(s) | 87, 636 |
| BmeT110I | CYCGRG | 1 cut(s) | 1039 |
| BmgT120I | GGNCC | 5 cut(s) | 87, 336, 353, 465, 636 |
| BmiI | GGNNCC | 5 cut(s) | 88, 235, 355, 508, 917 |
| BmrFI | CCNGG | 2 cut(s) | 334, 439 |
| BmrI | ACTGGG | 1 cut(s) | 934 |
| BmsI | GCATC | 2 cut(s) | 51, 811 |
| BmuI | ACTGGG | 1 cut(s) | 934 |
| BpmI | CTGGAG | 1 cut(s) | 692 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 570 |
| BpuEI | CTTGAG | 1 cut(s) | 524 |
| BpuMI | CCSGG | 1 cut(s) | 439 |
| BsaAI | YACGTR | 2 cut(s) | 230, 1003 |
| BsaHI | GRCGYC | 1 cut(s) | 432 |
| BsaJI | CCNNGG | 5 cut(s) | 79, 332, 498, 639, 886 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 104, 134, 248, 260, 278, 290, 302, 332 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 80, 230, 333, 645 |
| Bse118I | RCCGGY | 1 cut(s) | 467 |
| Bse1I | ACTGG | 1 cut(s) | 940 |
| BseBI | CCWGG | 1 cut(s) | 334 |
| BseDI | CCNNGG | 5 cut(s) | 79, 332, 498, 639, 886 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 80, 230, 333, 645 |
| BseMII | CTCAG | 3 cut(s) | 510, 561, 806 |
| BseNI | ACTGG | 1 cut(s) | 940 |
| BseRI | GAGGAG | 8 cut(s) | 31, 109, 140, 143, 172, 307, 334, 337 |
| BseXI | GCAGC | 5 cut(s) | 296, 393, 616, 1006, 1042 |
| BseYI | CCCAGC | 3 cut(s) | 338, 356, 961 |
| BsgI | GTGCAG | 1 cut(s) | 704 |
| Bsh1236I | CGCG | 4 cut(s) | 81, 102, 371, 419 |
| Bsh1285I | CGRYCG | 1 cut(s) | 303 |
| BshFI | GGCC | 5 cut(s) | 337, 354, 414, 467, 477 |
| BshNI | GGYRCC | 1 cut(s) | 233 |
| BsiEI | CGRYCG | 1 cut(s) | 303 |
| BsiHKAI | GWGCWC | 3 cut(s) | 525, 576, 777 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1039 |
| BsiSI | CCGG | 5 cut(s) | 65, 351, 426, 438, 468 |
| BslFI | GGGAC | 1 cut(s) | 275 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 80, 230, 333, 645 |
| BsmAI | GTCTC | 3 cut(s) | 62, 423, 735 |
| BsmBI | CGTCTC | 1 cut(s) | 423 |
| BsmFI | GGGAC | 1 cut(s) | 275 |
| BsnI | GGCC | 5 cut(s) | 337, 354, 414, 467, 477 |
| BsoBI | CYCGRG | 1 cut(s) | 1039 |
| Bsp1286I | GDGCHC | 5 cut(s) | 525, 540, 576, 777, 918 |
| Bsp143I | GATC | 2 cut(s) | 300, 606 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 570 |
| Bsp19I | CCATGG | 2 cut(s) | 498, 886 |
| BspANI | GGCC | 5 cut(s) | 337, 354, 414, 467, 477 |
| BspCNI | CTCAG | 3 cut(s) | 511, 562, 807 |
| BspFNI | CGCG | 4 cut(s) | 81, 102, 371, 419 |
| BspLI | GGNNCC | 5 cut(s) | 88, 235, 355, 508, 917 |
| BspPI | GGATC | 1 cut(s) | 614 |
| BspT107I | GGYRCC | 1 cut(s) | 233 |
| BspTI | CTTAAG | 1 cut(s) | 860 |
| BsrBI | CCGCTC | 1 cut(s) | 856 |
| BsrFI | RCCGGY | 1 cut(s) | 467 |
| BsrI | ACTGG | 1 cut(s) | 940 |
| BssAI | RCCGGY | 1 cut(s) | 467 |
| BssECI | CCNNGG | 5 cut(s) | 79, 332, 498, 639, 886 |
| BssMI | GATC | 2 cut(s) | 300, 606 |
| BssNI | GRCGYC | 1 cut(s) | 432 |
| BssT1I | CCWWGG | 3 cut(s) | 498, 639, 886 |
| Bst2UI | CCWGG | 1 cut(s) | 334 |
| Bst4CI | ACNGT | 1 cut(s) | 732 |
| Bst6I | CTCTTC | 1 cut(s) | 161 |
| BstACI | GRCGYC | 1 cut(s) | 432 |
| BstAFI | CTTAAG | 1 cut(s) | 860 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 758 |
| BstBAI | YACGTR | 2 cut(s) | 230, 1003 |
| BstC8I | GCNNGC | 4 cut(s) | 423, 469, 567, 980 |
| BstDEI | CTNAG | 5 cut(s) | 519, 570, 591, 610, 815 |
| BstDSI | CCRYGG | 3 cut(s) | 79, 498, 886 |
| BstFNI | CGCG | 4 cut(s) | 81, 102, 371, 419 |
| BstH2I | RGCGCY | 1 cut(s) | 363 |
| BstHHI | GCGC | 5 cut(s) | 104, 362, 373, 421, 934 |
| BstKTI | GATC | 2 cut(s) | 303, 609 |
| BstMAI | GTCTC | 3 cut(s) | 62, 423, 735 |
| BstMBI | GATC | 2 cut(s) | 300, 606 |
| BstMCI | CGRYCG | 1 cut(s) | 303 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 21, 368, 431, 571, 758, 958, 994, 1003 |
| BstNI | CCWGG | 1 cut(s) | 334 |
| BstSCI | CCNGG | 2 cut(s) | 332, 437 |
| BstSFI | CTRYAG | 2 cut(s) | 788, 907 |
| BstUI | CGCG | 4 cut(s) | 81, 102, 371, 419 |
| BstV1I | GCAGC | 5 cut(s) | 296, 393, 616, 1006, 1042 |
| BstX2I | RGATCY | 1 cut(s) | 606 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 83, 893 |
| BstYI | RGATCY | 1 cut(s) | 606 |
| BsuRI | GGCC | 5 cut(s) | 337, 354, 414, 467, 477 |
| BtgI | CCRYGG | 3 cut(s) | 79, 498, 886 |
| BtsIMutI | CAGTG | 1 cut(s) | 728 |
| Cac8I | GCNNGC | 4 cut(s) | 423, 469, 567, 980 |
| CfoI | GCGC | 5 cut(s) | 104, 362, 373, 421, 934 |
| Cfr10I | RCCGGY | 1 cut(s) | 467 |
| Cfr13I | GGNCC | 5 cut(s) | 87, 336, 353, 465, 636 |
| Cfr42I | CCGCGG | 1 cut(s) | 82 |
| CseI | GACGC | 2 cut(s) | 440, 697 |
| CviAII | CATG | 4 cut(s) | 295, 499, 887, 1048 |
| DdeI | CTNAG | 5 cut(s) | 519, 570, 591, 610, 815 |
| DpnI | GATC | 2 cut(s) | 302, 608 |
| DpnII | GATC | 2 cut(s) | 300, 606 |
| EaeI | YGGCCR | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 1 cut(s) | 161 |
| EarI | CTCTTC | 1 cut(s) | 161 |
| EciI | GGCGGA | 3 cut(s) | 116, 268, 310 |
| Ecl136II | GAGCTC | 3 cut(s) | 523, 574, 775 |
| Eco130I | CCWWGG | 3 cut(s) | 498, 639, 886 |
| Eco24I | GRGCYC | 5 cut(s) | 525, 540, 576, 777, 918 |
| Eco47I | GGWCC | 2 cut(s) | 87, 636 |
| Eco53kI | GAGCTC | 3 cut(s) | 523, 574, 775 |
| Eco57I | CTGAAG | 1 cut(s) | 677 |
| Eco72I | CACGTG | 2 cut(s) | 230, 1003 |
| Eco88I | CYCGRG | 1 cut(s) | 1039 |
| EcoICRI | GAGCTC | 3 cut(s) | 523, 574, 775 |
| EcoO109I | RGGNCCY | 1 cut(s) | 87 |
| EcoRII | CCWGG | 1 cut(s) | 332 |
| EcoT14I | CCWWGG | 3 cut(s) | 498, 639, 886 |
| EcoT38I | GRGCYC | 5 cut(s) | 525, 540, 576, 777, 918 |
| ErhI | CCWWGG | 3 cut(s) | 498, 639, 886 |
| Esp3I | CGTCTC | 1 cut(s) | 423 |
| FaeI | CATG | 4 cut(s) | 298, 502, 890, 1051 |
| FaqI | GGGAC | 1 cut(s) | 275 |
| FatI | CATG | 4 cut(s) | 294, 498, 886, 1047 |
| FauI | CCCGC | 3 cut(s) | 231, 259, 335 |
| FblI | GTMKAC | 1 cut(s) | 393 |
| FriOI | GRGCYC | 5 cut(s) | 525, 540, 576, 777, 918 |
| GlaI | GCGC | 5 cut(s) | 103, 361, 372, 420, 933 |
| GsaI | CCCAGC | 3 cut(s) | 342, 360, 965 |
| GsuI | CTGGAG | 1 cut(s) | 692 |
| HaeII | RGCGCY | 1 cut(s) | 363 |
| HaeIII | GGCC | 5 cut(s) | 337, 354, 414, 467, 477 |
| HapII | CCGG | 5 cut(s) | 65, 351, 426, 438, 468 |
| HgaI | GACGC | 2 cut(s) | 440, 697 |
| HhaI | GCGC | 5 cut(s) | 104, 362, 373, 421, 934 |
| Hin1I | GRCGYC | 1 cut(s) | 432 |
| Hin1II | CATG | 4 cut(s) | 298, 502, 890, 1051 |
| Hin6I | GCGC | 5 cut(s) | 102, 360, 371, 419, 932 |
| HinP1I | GCGC | 5 cut(s) | 102, 360, 371, 419, 932 |
| HincII | GTYRAC | 2 cut(s) | 394, 1024 |
| HindII | GTYRAC | 2 cut(s) | 394, 1024 |
| HinfI | GANTC | 6 cut(s) | 5, 70, 305, 314, 395, 515 |
| HpaII | CCGG | 5 cut(s) | 65, 351, 426, 438, 468 |
| HphI | GGTGA | 4 cut(s) | 19, 24, 664, 1028 |
| Hpy166II | GTNNAC | 2 cut(s) | 394, 1024 |
| Hpy188I | TCNGA | 7 cut(s) | 112, 169, 310, 400, 520, 582, 696 |
| Hpy188III | TCNNGA | 3 cut(s) | 530, 541, 557 |
| Hpy8I | GTNNAC | 2 cut(s) | 394, 1024 |
| Hpy99I | CGWCG | 5 cut(s) | 146, 221, 314, 395, 413 |
| HpyAV | CCTTC | 6 cut(s) | 133, 174, 436, 643, 673, 835 |
| HpyCH4III | ACNGT | 1 cut(s) | 732 |
| HpyCH4IV | ACGT | 3 cut(s) | 229, 1002, 1020 |
| HpyCH4V | TGCA | 4 cut(s) | 662, 685, 752, 952 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 21, 368, 431, 571, 758, 958, 994, 1003 |
| HpyF3I | CTNAG | 5 cut(s) | 519, 570, 591, 610, 815 |
| HpySE526I | ACGT | 3 cut(s) | 229, 1002, 1020 |
| Hsp92I | GRCGYC | 1 cut(s) | 432 |
| Hsp92II | CATG | 4 cut(s) | 298, 502, 890, 1051 |
| HspAI | GCGC | 5 cut(s) | 102, 360, 371, 419, 932 |
| KroI | GCCGGC | 1 cut(s) | 467 |
| KroNI | GCCGGC | 1 cut(s) | 469 |
| KspI | CCGCGG | 1 cut(s) | 82 |
| Kzo9I | GATC | 2 cut(s) | 300, 606 |
| LmnI | GCTCC | 6 cut(s) | 347, 512, 772, 799, 853, 921 |
| Lsp1109I | GCAGC | 5 cut(s) | 296, 393, 616, 1006, 1042 |
| LweI | GCATC | 2 cut(s) | 51, 811 |
| MaeII | ACGT | 3 cut(s) | 229, 1002, 1020 |
| MaeIII | GTNAC | 2 cut(s) | 724, 732 |
| MalI | GATC | 2 cut(s) | 302, 608 |
| MbiI | CCGCTC | 1 cut(s) | 856 |
| MboI | GATC | 2 cut(s) | 300, 606 |
| MboII | GAAGA | 2 cut(s) | 148, 397 |
| MflI | RGATCY | 1 cut(s) | 606 |
| MhlI | GDGCHC | 5 cut(s) | 525, 540, 576, 777, 918 |
| MluCI | AATT | 2 cut(s) | 780, 836 |
| MlyI | GAGTC | 4 cut(s) | 64, 299, 308, 389 |
| MmeI | TCCRAC | 7 cut(s) | 33, 135, 192, 285, 291, 333, 423 |
| MroNI | GCCGGC | 1 cut(s) | 467 |
| MseI | TTAA | 1 cut(s) | 861 |
| MslI | CAYNNNNRTG | 2 cut(s) | 81, 891 |
| MspA1I | CMGCKG | 3 cut(s) | 81, 814, 961 |
| MspCI | CTTAAG | 1 cut(s) | 860 |
| MspI | CCGG | 5 cut(s) | 65, 351, 426, 438, 468 |
| MspR9I | CCNGG | 2 cut(s) | 334, 439 |
| MvaI | CCWGG | 1 cut(s) | 334 |
| MvnI | CGCG | 4 cut(s) | 81, 102, 371, 419 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 21, 368, 431, 571, 758, 958, 994, 1003 |
| NaeI | GCCGGC | 1 cut(s) | 469 |
| NciI | CCSGG | 1 cut(s) | 439 |
| NcoI | CCATGG | 2 cut(s) | 498, 886 |
| NdeII | GATC | 2 cut(s) | 300, 606 |
| NgoMIV | GCCGGC | 1 cut(s) | 467 |
| NlaIII | CATG | 4 cut(s) | 298, 502, 890, 1051 |
| NlaIV | GGNNCC | 5 cut(s) | 88, 235, 355, 508, 917 |
| NmuCI | GTSAC | 1 cut(s) | 724 |
| OliI | CACNNNNGTG | 1 cut(s) | 81 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 165, 309 |
| PdiI | GCCGGC | 1 cut(s) | 469 |
| PfeI | GAWTC | 2 cut(s) | 5, 515 |
| Ple19I | CGATCG | 1 cut(s) | 303 |
| PleI | GAGTC | 4 cut(s) | 64, 299, 308, 389 |
| PmaCI | CACGTG | 2 cut(s) | 230, 1003 |
| PmlI | CACGTG | 2 cut(s) | 230, 1003 |
| PpsI | GAGTC | 4 cut(s) | 64, 299, 308, 389 |
| Ppu21I | YACGTR | 2 cut(s) | 230, 1003 |
| PpuMI | RGGWCCY | 1 cut(s) | 87 |
| Psp124BI | GAGCTC | 3 cut(s) | 525, 576, 777 |
| Psp5II | RGGWCCY | 1 cut(s) | 87 |
| Psp6I | CCWGG | 1 cut(s) | 332 |
| PspCI | CACGTG | 2 cut(s) | 230, 1003 |
| PspFI | CCCAGC | 3 cut(s) | 338, 356, 961 |
| PspGI | CCWGG | 1 cut(s) | 332 |
| PspN4I | GGNNCC | 5 cut(s) | 88, 235, 355, 508, 917 |
| PspPI | GGNCC | 5 cut(s) | 87, 336, 353, 465, 636 |
| PspPPI | RGGWCCY | 1 cut(s) | 87 |
| PsuI | RGATCY | 1 cut(s) | 606 |
| PvuI | CGATCG | 1 cut(s) | 303 |
| PvuII | CAGCTG | 2 cut(s) | 814, 961 |
| RseI | CAYNNNNRTG | 2 cut(s) | 81, 891 |
| SacI | GAGCTC | 3 cut(s) | 525, 576, 777 |
| SacII | CCGCGG | 1 cut(s) | 82 |
| SalI | GTCGAC | 1 cut(s) | 392 |
| SaqAI | TTAA | 1 cut(s) | 861 |
| Sau3AI | GATC | 2 cut(s) | 300, 606 |
| Sau96I | GGNCC | 5 cut(s) | 87, 336, 353, 465, 636 |
| SchI | GAGTC | 4 cut(s) | 64, 299, 308, 389 |
| ScrFI | CCNGG | 2 cut(s) | 334, 439 |
| SduI | GDGCHC | 5 cut(s) | 525, 540, 576, 777, 918 |
| SfaNI | GCATC | 2 cut(s) | 51, 811 |
| SfcI | CTRYAG | 2 cut(s) | 788, 907 |
| Sfr303I | CCGCGG | 1 cut(s) | 82 |
| SgrBI | CCGCGG | 1 cut(s) | 82 |
| SinI | GGWCC | 2 cut(s) | 87, 636 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 81, 891 |
| SmlI | CTYRAG | 2 cut(s) | 539, 860 |
| SmoI | CTYRAG | 2 cut(s) | 539, 860 |
| Sse9I | AATT | 2 cut(s) | 780, 836 |
| SstI | GAGCTC | 3 cut(s) | 525, 576, 777 |
| StyD4I | CCNGG | 2 cut(s) | 332, 437 |
| StyI | CCWWGG | 3 cut(s) | 498, 639, 886 |
| TaaI | ACNGT | 1 cut(s) | 732 |
| TaiI | ACGT | 3 cut(s) | 232, 1005, 1023 |
| TaqI | TCGA | 7 cut(s) | 141, 159, 174, 303, 393, 408, 531 |
| TasI | AATT | 2 cut(s) | 780, 836 |
| TfiI | GAWTC | 2 cut(s) | 5, 515 |
| Tru1I | TTAA | 1 cut(s) | 861 |
| Tru9I | TTAA | 1 cut(s) | 861 |
| TscAI | CASTG | 1 cut(s) | 735 |
| TseFI | GTSAC | 1 cut(s) | 724 |
| TseI | GCWGC | 5 cut(s) | 284, 381, 629, 994, 1030 |
| Tsp45I | GTSAC | 1 cut(s) | 724 |
| TspDTI | ATGAA | 2 cut(s) | 846, 1036 |
| TspGWI | ACGGA | 1 cut(s) | 379 |
| TspRI | CASTG | 1 cut(s) | 735 |
| Vha464I | CTTAAG | 1 cut(s) | 860 |
| VpaK11BI | GGWCC | 2 cut(s) | 87, 636 |
| XapI | RAATTY | 1 cut(s) | 780 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 884 |
| XmiI | GTMKAC | 1 cut(s) | 393 |