Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294175.1

Orthogroup ID

OG0010378

Physical Location & Seq

Genomic Coordinates Reverse (-)

373 .. 870

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294175.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgcagagagacactactgcaataactgctgaaaataaggagctcaaaattcggctacagtctatggagcaacaagcacagctgagagatgccttgaatgaaaaattaaaggaggaagtggagcggcttaagattgaaaccagccaaatcccccatgggagtggaaaccctttctacagagggctcccccctcaatatgtgccgccccagtctgccttgcataatcagctgggtggtagccagagccagcaccagcaccagcagcttcacatgcttcacaaccagaacgtcaacgggcagcctcacccgagtttcatggacttcaaccagagggcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

112

Amino Acids

12.87

Weight (kDa)

7.07

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43700
fragaria_vesca	FvH4_2g14020 FvH4_2g14020
malus_domestica	MD05G1022300.v1.1 MD10G1023800.v1.1
prunus_persica	Prupe.8G026300_v2.0.a1
pyrus_communis	pycom05g01310 pycom10g01570
rosa_chinensis	RchiOBHm_Chr6g0275921
rosa_laevigata	RLG00000013423
rosa_multiflora	Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004
rosa_roxburghii	Rroxscaffold_7G00192770
rosa_rugosa	Rorug06G0097400 Rorug06G0097500 Rorug06G0097600
rosa_samantha	Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400
rosa_wichuraiana	Rw6G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	2 cut(s)	124, 203
AcsI	RAATTY	1 cut(s)	48
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	97, 137, 325
AluBI	AGCT	4 cut(s)	43, 82, 229, 265
AluI	AGCT	4 cut(s)	43, 82, 229, 265
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	3
Ama87I	CYCGRG	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	262, 298
ApoI	RAATTY	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	45, 186
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	274, 310
BcoDI	GTCTC	1 cut(s)	3
BfmI	CTRYAG	2 cut(s)	56, 175
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	4 cut(s)	125, 203, 263, 299
BlsI	GCNGC	4 cut(s)	126, 204, 264, 300
BmeT110I	CYCGRG	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	274, 310
BseYI	CCCAGC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	3
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	45, 186
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	2 cut(s)	124, 203
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	128
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 226, 262, 271
BstNSI	RCATGY	1 cut(s)	274
BstSFI	CTRYAG	2 cut(s)	56, 175
BstV1I	GCAGC	2 cut(s)	274, 310
BstXI	CCANNNNNNTGG	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	248
CviAII	CATG	3 cut(s)	155, 271, 316
DdeI	CTNAG	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	45, 186
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	154
EcoT38I	GRGCYC	2 cut(s)	45, 186
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	3 cut(s)	158, 274, 319
FaiI	YATR	6 cut(s)	65, 156, 198, 222, 272, 317
FatI	CATG	3 cut(s)	154, 270, 315
Fnu4HI	GCNGC	4 cut(s)	125, 203, 263, 299
FriOI	GRGCYC	2 cut(s)	45, 186
Fsp4HI	GCNGC	4 cut(s)	125, 203, 263, 299
GluI	GCNGC	4 cut(s)	125, 203, 263, 299
GsaI	CCCAGC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	158, 274, 319
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	292
Hpy8I	GTNNAC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	4, 20, 220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 226, 262, 271
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	158, 274, 319
LmnI	GCTCC	4 cut(s)	40, 67, 121, 189
LpnPI	CCDG	8 cut(s)	154, 215, 221, 254, 260, 266, 272, 296
Lsp1109I	GCAGC	2 cut(s)	274, 310
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	288
MbiI	CCGCTC	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	45, 186
MluCI	AATT	2 cut(s)	48, 104
MnlI	CCTC	5 cut(s)	106, 173, 201, 312, 324
MseI	TTAA	2 cut(s)	107, 129
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	82, 229
MspCI	CTTAAG	1 cut(s)	128
MwoI	GCNNNNNNNGC	4 cut(s)	26, 226, 262, 271
NcoI	CCATGG	1 cut(s)	154
NlaIII	CATG	3 cut(s)	158, 274, 319
NlaIV	GGNNCC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	126, 204, 264, 300
Psp124BI	GAGCTC	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	185
PvuII	CAGCTG	2 cut(s)	82, 229
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	107, 129
SatI	GCNGC	4 cut(s)	125, 203, 263, 299
SduI	GDGCHC	2 cut(s)	45, 186
SetI	ASST	5 cut(s)	45, 84, 231, 267, 291
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	2 cut(s)	56, 175
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	48, 104
SsiI	CCGC	2 cut(s)	124, 203
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	291
TasI	AATT	2 cut(s)	48, 104
TauI	GCSGC	2 cut(s)	127, 205
Tru1I	TTAA	2 cut(s)	107, 129
Tru9I	TTAA	2 cut(s)	107, 129
TseI	GCWGC	2 cut(s)	262, 298
TspDTI	ATGAA	2 cut(s)	114, 304
Vha464I	CTTAAG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	48
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.