Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010378

Physical Location & Seq

Genomic Coordinates Reverse (-)

1654011 .. 1657425

Gene Structure 3415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATTCGAACAACATCAACAACTTCGGCGCTGCTTCCAGACCTTCCCCGACATCATCGACTGACATGGAGCAGATGTCGGAGACCCCTCAGCGCGGGTCTCACCACCGCCGGGCCCACTCCGACACCTCCTTCCGCATCCCCAACTTCGACGACCTCCTCCTCTTCGACCCTTCCGACCTCGACCTCTCCTGTCTCCCCTCCCCAACCCTCCTGCCACGTGGCGGCAACAGCAGCAACAACAACAACAACATCCCCATGTCCCTCGACTCCGACGACTCCTCGGAGGGCCAACCACCCAACCCCTTCTCCTCCACCCCCAAGCCCGCCGCTTCCTCCGGCTCCACCGCCACCGCTGCCCACCTCCGGAGCCTCTCCGTCGATTCCGACTTCTTCGACGGCCTGGGCCTGGGGGATTCCGCCAGGGAAGTGAGCGGGGGGCAGAGGTCTGGGCCCCACCACAGGCACAGCAGCTCGATGGACGGCTCGTCTTTCGATGCGGACTCGTCGGTGATGACGCTGAATGGCTTCAAGAAGTCCGTTGCTCCTGAGAGACTTGCTGAGCTCTCTCTGATTGACCCTAAGAGAGCCAAAAGGATATTAGCTAATAGGCAATCGGCTGCGAGGTCAAAGGAGAGGAAGGTGAGGTATACGAATGAGCTGGAGAGGAAGGTGCAGACGCTTCAGACGGAGGCAACCACCCTCTCCGCGCAGGTCACTCTGTTACAGAGAGACACTACTGTCATAACTGCTGAGAATAAGGAGCTCAAACTTCGCCTACAGGCTCTGGAGCAACAAGCACAGCTTAGAGATGCTTTGAATGAGAAACTTAAGGAGGAAGTGCAGCGGCTTAAGATTGAAACCAACCAAATCCCACCCGGGGCTGGGAATGGAAACCCTTTCTACCGAGGGCTTCCCCCTCAATATGGTCAGACTCAGCACCACCAGAACCACAACCAGCAGAACCAGCACCAGCAGCATCACAACCAGAATGTCGCCAATGGGCAGGCTCACCCGAGCTTTATGGACTTCAACGGGAGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

349

Amino Acids

38.25

Weight (kDa)

6.71

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43700
fragaria_vesca	FvH4_2g14020 FvH4_2g14020
malus_domestica	MD05G1022300.v1.1 MD10G1023800.v1.1
prunus_persica	Prupe.8G026300_v2.0.a1
pyrus_communis	pycom05g01310 pycom10g01570
rosa_chinensis	RchiOBHm_Chr6g0275921
rosa_laevigata	RLG00000013423
rosa_multiflora	Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004
rosa_roxburghii	Rroxscaffold_7G00192770
rosa_rugosa	Rorug06G0097400 Rorug06G0097500 Rorug06G0097600
rosa_samantha	Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400
rosa_wichuraiana	Rw6G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	740
Acc36I	ACCTGC	1 cut(s)	703
AccBSI	CCGCTC	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	650
AccII	CGCG	2 cut(s)	96, 710
AccIII	TCCGGA	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	668
AcvI	CACGTG	1 cut(s)	221
AflII	CTTAAG	2 cut(s)	830, 851
AgsI	TTSAA	4 cut(s)	532, 820, 860, 1033
AhdI	GACNNNNNGTC	1 cut(s)	487
AjnI	CCWGG	3 cut(s)	402, 408, 422
AluBI	AGCT	7 cut(s)	474, 565, 605, 661, 766, 805, 1020
AluI	AGCT	7 cut(s)	474, 565, 605, 661, 766, 805, 1020
Alw21I	GWGCWC	2 cut(s)	567, 768
Alw26I	GTCTC	5 cut(s)	77, 105, 200, 547, 726
AlwNI	CAGNNNCTG	1 cut(s)	787
Ama87I	CYCGRG	2 cut(s)	878, 1015
Aor13HI	TCCGGA	1 cut(s)	366
AoxI	GGCC	5 cut(s)	114, 289, 400, 406, 452
ApaI	GGGCCC	2 cut(s)	118, 456
ApeKI	GCWGC	7 cut(s)	32, 234, 356, 471, 620, 844, 976
Asp700I	GAANNNNTTC	1 cut(s)	527
AspLEI	GCGC	3 cut(s)	32, 96, 712
AspS9I	GGNCC	6 cut(s)	114, 115, 289, 406, 452, 453
AsuC2I	CCSGG	3 cut(s)	113, 879, 880
AsuHPI	GGTGA	4 cut(s)	95, 523, 655, 1004
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	2 cut(s)	878, 1015
BaeGI	GKGCMC	2 cut(s)	118, 456
BanII	GRGCYC	4 cut(s)	118, 456, 567, 768
BbrPI	CACGTG	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	567, 768
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	7 cut(s)	19, 246, 343, 483, 607, 856, 988
BccI	CCATC	1 cut(s)	472
BceAI	ACGGC	2 cut(s)	415, 499
BciT130I	CCWGG	3 cut(s)	404, 410, 424
BcnI	CCSGG	3 cut(s)	113, 879, 880
BcoDI	GTCTC	5 cut(s)	77, 105, 200, 547, 726
BfmI	CTRYAG	1 cut(s)	779
BfoI	RGCGCY	1 cut(s)	33
BfrI	CTTAAG	2 cut(s)	830, 851
BfuAI	ACCTGC	1 cut(s)	703
BlpI	GCTNAGC	1 cut(s)	561
Bme1390I	CCNGG	6 cut(s)	113, 404, 410, 424, 879, 880
BmeRI	GACNNNNNGTC	1 cut(s)	487
BmeT110I	CYCGRG	2 cut(s)	878, 1015
BmgT120I	GGNCC	6 cut(s)	114, 115, 289, 406, 452, 453
BmiI	GGNNCC	5 cut(s)	116, 343, 371, 454, 455
BmrFI	CCNGG	6 cut(s)	113, 404, 410, 424, 879, 880
BmsI	GCATC	4 cut(s)	147, 487, 802, 988
BpmI	CTGGAG	2 cut(s)	683, 809
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	8
BpuMI	CCSGG	3 cut(s)	113, 879, 880
BsaAI	YACGTR	1 cut(s)	221
BsaI	GGTCTC	2 cut(s)	77, 105
BsaJI	CCNNGG	7 cut(s)	282, 403, 409, 423, 878, 879, 907
BsaWI	WCCGGW	1 cut(s)	366
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 293, 323
BseAI	TCCGGA	1 cut(s)	366
BseBI	CCWGG	3 cut(s)	404, 410, 424
BseDI	CCNNGG	7 cut(s)	282, 403, 409, 423, 878, 879, 907
BseGI	GGATG	2 cut(s)	138, 252
BseMII	CTCAG	5 cut(s)	104, 540, 552, 744, 950
BseRI	GAGGAG	4 cut(s)	149, 152, 271, 301
BseSI	GKGCMC	2 cut(s)	118, 456
BseXI	GCAGC	7 cut(s)	19, 246, 343, 483, 607, 856, 988
BseYI	CCCAGC	1 cut(s)	884
BsgI	GTGCAG	2 cut(s)	695, 863
Bsh1236I	CGCG	2 cut(s)	96, 710
BshFI	GGCC	5 cut(s)	116, 291, 402, 408, 454
BsiHKAI	GWGCWC	2 cut(s)	567, 768
BsiHKCI	CYCGRG	2 cut(s)	878, 1015
BsiSI	CCGG	4 cut(s)	112, 339, 367, 879
BslFI	GGGAC	1 cut(s)	247
BsmAI	GTCTC	5 cut(s)	77, 105, 200, 547, 726
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	5 cut(s)	116, 291, 402, 408, 454
Bso31I	GGTCTC	2 cut(s)	77, 105
BsoBI	CYCGRG	2 cut(s)	878, 1015
Bsp119I	TTCGAA	1 cut(s)	8
Bsp120I	GGGCCC	2 cut(s)	114, 452
Bsp1286I	GDGCHC	4 cut(s)	118, 456, 567, 768
Bsp13I	TCCGGA	1 cut(s)	366
Bsp1720I	GCTNAGC	1 cut(s)	561
BspANI	GGCC	5 cut(s)	116, 291, 402, 408, 454
BspCNI	CTCAG	5 cut(s)	103, 541, 553, 745, 949
BspEI	TCCGGA	1 cut(s)	366
BspFNI	CGCG	2 cut(s)	96, 710
BspLI	GGNNCC	5 cut(s)	116, 343, 371, 454, 455
BspMI	ACCTGC	1 cut(s)	703
BspT104I	TTCGAA	1 cut(s)	8
BspTI	CTTAAG	2 cut(s)	830, 851
BspTNI	GGTCTC	2 cut(s)	77, 105
BsrBI	CCGCTC	1 cut(s)	435
BssECI	CCNNGG	7 cut(s)	282, 403, 409, 423, 878, 879, 907
BssNAI	GTATAC	1 cut(s)	651
Bst1107I	GTATAC	1 cut(s)	651
Bst2UI	CCWGG	3 cut(s)	404, 410, 424
Bst4CI	ACNGT	1 cut(s)	742
Bst6I	CTCTTC	1 cut(s)	170
BstAFI	CTTAAG	2 cut(s)	830, 851
BstBAI	YACGTR	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	327, 1008
BstDEI	CTNAG	7 cut(s)	90, 549, 561, 582, 753, 806, 936
BstF5I	GGATG	2 cut(s)	138, 252
BstFNI	CGCG	2 cut(s)	96, 710
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	3 cut(s)	32, 96, 712
BstMAI	GTCTC	5 cut(s)	77, 105, 200, 547, 726
BstMWI	GCNNNNNNNGC	5 cut(s)	231, 234, 356, 967, 976
BstNI	CCWGG	3 cut(s)	404, 410, 424
BstSCI	CCNGG	6 cut(s)	111, 402, 408, 422, 877, 878
BstSFI	CTRYAG	1 cut(s)	779
BstSLI	GKGCMC	2 cut(s)	118, 456
BstUI	CGCG	2 cut(s)	96, 710
BstV1I	GCAGC	7 cut(s)	19, 246, 343, 483, 607, 856, 988
BstZ17I	GTATAC	1 cut(s)	651
BsuRI	GGCC	5 cut(s)	116, 291, 402, 408, 454
BtsCI	GGATG	2 cut(s)	138, 252
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	2 cut(s)	327, 1008
CaiI	CAGNNNCTG	1 cut(s)	787
CfoI	GCGC	3 cut(s)	32, 96, 712
Cfr13I	GGNCC	6 cut(s)	114, 115, 289, 406, 452, 453
Cfr9I	CCCGGG	1 cut(s)	878
CseI	GACGC	2 cut(s)	526, 688
CviAII	CATG	2 cut(s)	67, 259
DdeI	CTNAG	7 cut(s)	90, 549, 561, 582, 753, 806, 936
DrdI	GACNNNNNNGTC	1 cut(s)	740
DriI	GACNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	740
Eam1104I	CTCTTC	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	409
Ecl136II	GAGCTC	2 cut(s)	565, 766
Eco24I	GRGCYC	4 cut(s)	118, 456, 567, 768
Eco31I	GGTCTC	2 cut(s)	77, 105
Eco53kI	GAGCTC	2 cut(s)	565, 766
Eco57I	CTGAAG	1 cut(s)	668
Eco72I	CACGTG	1 cut(s)	221
Eco88I	CYCGRG	2 cut(s)	878, 1015
EcoICRI	GAGCTC	2 cut(s)	565, 766
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRII	CCWGG	3 cut(s)	402, 408, 422
EcoT38I	GRGCYC	4 cut(s)	118, 456, 567, 768
FaeI	CATG	2 cut(s)	70, 262
FaiI	YATR	7 cut(s)	68, 260, 651, 746, 927, 1025, 1045
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	66, 258
FauI	CCCGC	3 cut(s)	89, 334, 428
FblI	GTMKAC	1 cut(s)	650
FokI	GGATG	2 cut(s)	125, 239
FriOI	GRGCYC	4 cut(s)	118, 456, 567, 768
GlaI	GCGC	3 cut(s)	31, 95, 711
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	2 cut(s)	683, 809
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	5 cut(s)	116, 291, 402, 408, 454
HapII	CCGG	4 cut(s)	112, 339, 367, 879
HgaI	GACGC	2 cut(s)	526, 688
HhaI	GCGC	3 cut(s)	32, 96, 712
Hin1II	CATG	2 cut(s)	70, 262
Hin6I	GCGC	3 cut(s)	30, 94, 710
HinP1I	GCGC	3 cut(s)	30, 94, 710
HinfI	GANTC	7 cut(s)	5, 269, 278, 383, 416, 503, 934
HpaII	CCGG	4 cut(s)	112, 339, 367, 879
HphI	GGTGA	4 cut(s)	95, 523, 655, 1004
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	9 cut(s)	82, 124, 178, 274, 286, 388, 573, 687, 933
Hpy188III	TCNNGA	5 cut(s)	39, 367, 532, 548, 788
Hpy8I	GTNNAC	1 cut(s)	651
Hpy99I	CGWCG	5 cut(s)	155, 278, 383, 401, 511
HpyAV	CCTTC	6 cut(s)	54, 142, 183, 316, 634, 664
HpyCH4III	ACNGT	1 cut(s)	742
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	676, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	231, 234, 356, 967, 976
HpyF3I	CTNAG	7 cut(s)	90, 549, 561, 582, 753, 806, 936
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	70, 262
HspAI	GCGC	3 cut(s)	30, 94, 710
Kpn2I	TCCGGA	1 cut(s)	366
LmnI	GCTCC	6 cut(s)	70, 347, 369, 550, 763, 790
Lsp1109I	GCAGC	7 cut(s)	19, 246, 343, 483, 607, 856, 988
LweI	GCATC	4 cut(s)	147, 487, 802, 988
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	715, 723
MbiI	CCGCTC	1 cut(s)	435
MboII	GAAGA	2 cut(s)	157, 385
MhlI	GDGCHC	4 cut(s)	118, 456, 567, 768
MlyI	GAGTC	4 cut(s)	263, 272, 497, 928
MmeI	TCCRAC	5 cut(s)	60, 147, 201, 297, 411
MroI	TCCGGA	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	2 cut(s)	831, 852
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	2 cut(s)	356, 847
MspCI	CTTAAG	2 cut(s)	830, 851
MspI	CCGG	4 cut(s)	112, 339, 367, 879
MspR9I	CCNGG	6 cut(s)	113, 404, 410, 424, 879, 880
MvaI	CCWGG	3 cut(s)	404, 410, 424
MvnI	CGCG	2 cut(s)	96, 710
MwoI	GCNNNNNNNGC	5 cut(s)	231, 234, 356, 967, 976
NciI	CCSGG	3 cut(s)	113, 879, 880
NlaIII	CATG	2 cut(s)	70, 262
NlaIV	GGNNCC	5 cut(s)	116, 343, 371, 454, 455
NmuCI	GTSAC	1 cut(s)	715
NspV	TTCGAA	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 273
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	5, 383, 416
PleI	GAGTC	4 cut(s)	263, 272, 497, 928
PmaCI	CACGTG	1 cut(s)	221
PmlI	CACGTG	1 cut(s)	221
PpsI	GAGTC	4 cut(s)	263, 272, 497, 928
Ppu21I	YACGTR	1 cut(s)	221
Psp124BI	GAGCTC	2 cut(s)	567, 768
Psp6I	CCWGG	3 cut(s)	402, 408, 422
PspCI	CACGTG	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	3 cut(s)	402, 408, 422
PspN4I	GGNNCC	5 cut(s)	116, 343, 371, 454, 455
PspOMI	GGGCCC	2 cut(s)	114, 452
PspPI	GGNCC	6 cut(s)	114, 115, 289, 406, 452, 453
PstNI	CAGNNNCTG	1 cut(s)	787
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	2 cut(s)	567, 768
SaqAI	TTAA	2 cut(s)	831, 852
Sau96I	GGNCC	6 cut(s)	114, 115, 289, 406, 452, 453
SchI	GAGTC	4 cut(s)	263, 272, 497, 928
ScrFI	CCNGG	6 cut(s)	113, 404, 410, 424, 879, 880
SduI	GDGCHC	4 cut(s)	118, 456, 567, 768
SfaNI	GCATC	4 cut(s)	147, 487, 802, 988
SfcI	CTRYAG	1 cut(s)	779
SfuI	TTCGAA	1 cut(s)	8
SmaI	CCCGGG	1 cut(s)	880
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	830, 851
SmoI	CTYRAG	2 cut(s)	830, 851
SstI	GAGCTC	2 cut(s)	567, 768
StyD4I	CCNGG	6 cut(s)	111, 402, 408, 422, 877, 878
TaaI	ACNGT	1 cut(s)	742
TaiI	ACGT	1 cut(s)	223
TauI	GCSGC	3 cut(s)	228, 332, 850
TfiI	GAWTC	3 cut(s)	5, 383, 416
Tru1I	TTAA	2 cut(s)	831, 852
Tru9I	TTAA	2 cut(s)	831, 852
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	7 cut(s)	32, 234, 356, 471, 620, 844, 976
Tsp45I	GTSAC	1 cut(s)	715
TspGWI	ACGGA	3 cut(s)	367, 529, 704
TspMI	CCCGGG	1 cut(s)	878
Vha464I	CTTAAG	2 cut(s)	830, 851
XmaI	CCCGGG	1 cut(s)	878
XmiI	GTMKAC	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.