Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010378

Physical Location & Seq

Genomic Coordinates Forward (+)

40273177 .. 40277674

Gene Structure 4498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG213100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGATTCCAACAACAACAACAGCCACAGCTTCACCTCACCCACCTCCTCAACCGACATTGAGCAGATGCCGGAGACCCCCCACCGCGGTGGGTCCTACCACCGCCGCGCCCACTCCGACTTCTCCTCCTTCCGCCTCCCCAACTTCGACGACCTCCTCCTCTTCGACCCTTCCGACCTCGACCTCTCCTCCTTCCCCTCCCCCTCCCCCTCCCCCTCTCCCGTCCCCCCGCCACGTGGCAACTCCAACTCCAACTCCGCCGCCGCGGCCGTCGTCCCCATGCCGATCGACTCCGACGACTCCTCCGCCTCCCGCCCCAGGCCCAGCTCCTCCTCCGGCCCCAGCGCCGCCGCCGCGCATCTCCGCAGCCTCTCCGTCGACTCCGACTTCTTCGACGGCCTCGCGCTCGCCGGAGACGCCGGCGGGAAGGAAGTCGTTGGGGGTAAGAGGGCCGGCGGCGGCCACCACAGGCACAGCAACTCCATGGACGGCTCCTTTGATTCTGAGCTCTCTCTCGATGGGCTCAAGAAGTCCATAACTCCTGATAAGCTGGCTGAGCTCTCTCTGATTGACCCTAAGAGAGCTAAAAGGATCTTAGCTAATAGACAATCCGCTGCGAGGTCCAAGGAGAGGAAGGTGAGATATGCAAATGAGCTGGAGAGGAAGGTGCAGACGCTTCAGACAGAGGCAACCACCCTATCGGCACAGGTCACACTGTTACAGGTAATACCTAAGACTTTGACTTTTGTAGGTTCTTGGAATAATAAGGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

258

Amino Acids

27.54

Weight (kDa)

7.11

Isoelectric Point (pI)

63.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	191 - 241	3.3e-07	Basic region leucine zipper
bZIP_1	PF00170	193 - 240	3.4e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43700
fragaria_vesca	FvH4_2g14020 FvH4_2g14020
malus_domestica	MD05G1022300.v1.1 MD10G1023800.v1.1
prunus_persica	Prupe.8G026300_v2.0.a1
pyrus_communis	pycom05g01310 pycom10g01570
rosa_chinensis	RchiOBHm_Chr6g0275921
rosa_laevigata	RLG00000013423
rosa_multiflora	Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004
rosa_roxburghii	Rroxscaffold_7G00192770
rosa_rugosa	Rorug06G0097400 Rorug06G0097500 Rorug06G0097600
rosa_samantha	Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400
rosa_wichuraiana	Rw6G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	5 cut(s)	87, 108, 266, 356, 404
AclWI	GGATC	1 cut(s)	599
AcoI	YGGCCR	2 cut(s)	267, 460
AcuI	CTGAAG	1 cut(s)	662
AcvI	CACGTG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	417
AfiI	CCNNNNNNNGG	5 cut(s)	86, 236, 318, 618, 630
AjnI	CCWGG	1 cut(s)	317
AleI	CACNNNNGTG	1 cut(s)	87
AluBI	AGCT	8 cut(s)	30, 327, 508, 550, 559, 584, 599, 655
AluI	AGCT	8 cut(s)	30, 327, 508, 550, 559, 584, 599, 655
Alw21I	GWGCWC	2 cut(s)	510, 561
Alw26I	GTCTC	2 cut(s)	68, 408
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	6 cut(s)	267, 320, 337, 397, 450, 460
ApeKI	GCWGC	2 cut(s)	366, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AspLEI	GCGC	4 cut(s)	110, 347, 358, 406
AspS9I	GGNCC	5 cut(s)	93, 321, 338, 450, 621
AsuHPI	GGTGA	3 cut(s)	25, 30, 649
AvaII	GGWCC	2 cut(s)	93, 621
BanII	GRGCYC	3 cut(s)	510, 525, 561
BbrPI	CACGTG	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	510, 561
BbvI	GCAGC	2 cut(s)	378, 601
BccI	CCATC	1 cut(s)	512
BceAI	ACGGC	3 cut(s)	254, 412, 505
BciT130I	CCWGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	68, 408
BfoI	RGCGCY	1 cut(s)	348
BglI	GCCNNNNNGGC	1 cut(s)	266
BlpI	GCTNAGC	1 cut(s)	555
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	2 cut(s)	93, 621
BmgT120I	GGNCC	5 cut(s)	93, 321, 338, 450, 621
BmiI	GGNNCC	3 cut(s)	94, 340, 493
BmrFI	CCNGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	57, 367
BpmI	CTGGAG	1 cut(s)	677
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	509
BsaAI	YACGTR	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	5 cut(s)	85, 264, 317, 483, 624
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 236, 318, 618, 630
Bse118I	RCCGGY	2 cut(s)	419, 452
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	5 cut(s)	85, 264, 317, 483, 624
BseLI	CCNNNNNNNGG	5 cut(s)	86, 236, 318, 618, 630
BseMII	CTCAG	2 cut(s)	495, 546
BseRI	GAGGAG	8 cut(s)	37, 115, 146, 149, 178, 292, 319, 322
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	378, 601
BseYI	CCCAGC	2 cut(s)	323, 341
BsgI	GTGCAG	1 cut(s)	689
Bsh1236I	CGCG	5 cut(s)	87, 108, 266, 356, 404
Bsh1285I	CGRYCG	2 cut(s)	270, 288
BshFI	GGCC	6 cut(s)	269, 322, 339, 399, 452, 462
BsiEI	CGRYCG	2 cut(s)	270, 288
BsiHKAI	GWGCWC	2 cut(s)	510, 561
BsiSI	CCGG	5 cut(s)	71, 336, 411, 420, 453
BslFI	GGGAC	2 cut(s)	209, 260
BslI	CCNNNNNNNGG	5 cut(s)	86, 236, 318, 618, 630
BsmAI	GTCTC	2 cut(s)	68, 408
BsmBI	CGTCTC	1 cut(s)	408
BsmFI	GGGAC	2 cut(s)	209, 260
BsnI	GGCC	6 cut(s)	269, 322, 339, 399, 452, 462
Bso31I	GGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	3 cut(s)	510, 525, 561
Bsp143I	GATC	2 cut(s)	285, 591
Bsp1720I	GCTNAGC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	483
BspANI	GGCC	6 cut(s)	269, 322, 339, 399, 452, 462
BspCNI	CTCAG	2 cut(s)	496, 547
BspFNI	CGCG	5 cut(s)	87, 108, 266, 356, 404
BspLI	GGNNCC	3 cut(s)	94, 340, 493
BspPI	GGATC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	68
BsrFI	RCCGGY	2 cut(s)	419, 452
BssAI	RCCGGY	2 cut(s)	419, 452
BssECI	CCNNGG	5 cut(s)	85, 264, 317, 483, 624
BssMI	GATC	2 cut(s)	285, 591
BssNI	GRCGYC	1 cut(s)	417
BssT1I	CCWWGG	2 cut(s)	483, 624
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	717
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	4 cut(s)	408, 421, 454, 552
BstDEI	CTNAG	5 cut(s)	504, 555, 576, 595, 732
BstDSI	CCRYGG	3 cut(s)	85, 264, 483
BstFNI	CGCG	5 cut(s)	87, 108, 266, 356, 404
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	4 cut(s)	110, 347, 358, 406
BstKTI	GATC	2 cut(s)	288, 594
BstMAI	GTCTC	2 cut(s)	68, 408
BstMBI	GATC	2 cut(s)	285, 591
BstMCI	CGRYCG	2 cut(s)	270, 288
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 353, 416, 556
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	317
BstUI	CGCG	5 cut(s)	87, 108, 266, 356, 404
BstV1I	GCAGC	2 cut(s)	378, 601
BstX2I	RGATCY	1 cut(s)	591
BstXI	CCANNNNNNTGG	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	591
BstZI	CGGCCG	1 cut(s)	267
BsuRI	GGCC	6 cut(s)	269, 322, 339, 399, 452, 462
BtgI	CCRYGG	3 cut(s)	85, 264, 483
BtsIMutI	CAGTG	1 cut(s)	713
Cac8I	GCNNGC	4 cut(s)	408, 421, 454, 552
CfoI	GCGC	4 cut(s)	110, 347, 358, 406
Cfr10I	RCCGGY	2 cut(s)	419, 452
Cfr13I	GGNCC	5 cut(s)	93, 321, 338, 450, 621
Cfr42I	CCGCGG	2 cut(s)	88, 267
CseI	GACGC	2 cut(s)	425, 682
CviAII	CATG	2 cut(s)	280, 484
DdeI	CTNAG	5 cut(s)	504, 555, 576, 595, 732
DpnI	GATC	2 cut(s)	287, 593
DpnII	GATC	2 cut(s)	285, 591
EaeI	YGGCCR	2 cut(s)	267, 460
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	3 cut(s)	122, 247, 295
Ecl136II	GAGCTC	2 cut(s)	508, 559
EclXI	CGGCCG	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	483, 624
Eco24I	GRGCYC	3 cut(s)	510, 525, 561
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	93, 621
Eco52I	CGGCCG	1 cut(s)	267
Eco53kI	GAGCTC	2 cut(s)	508, 559
Eco57I	CTGAAG	1 cut(s)	662
Eco72I	CACGTG	1 cut(s)	236
EcoICRI	GAGCTC	2 cut(s)	508, 559
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	317
EcoT14I	CCWWGG	2 cut(s)	483, 624
EcoT38I	GRGCYC	3 cut(s)	510, 525, 561
ErhI	CCWWGG	2 cut(s)	483, 624
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	2 cut(s)	283, 487
FaiI	YATR	5 cut(s)	281, 485, 536, 645, 775
FaqI	GGGAC	2 cut(s)	209, 260
FatI	CATG	2 cut(s)	279, 483
FauI	CCCGC	3 cut(s)	237, 320, 416
FblI	GTMKAC	1 cut(s)	378
FriOI	GRGCYC	3 cut(s)	510, 525, 561
GlaI	GCGC	4 cut(s)	109, 346, 357, 405
GsaI	CCCAGC	2 cut(s)	327, 345
GsuI	CTGGAG	1 cut(s)	677
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	6 cut(s)	269, 322, 339, 399, 452, 462
HapII	CCGG	5 cut(s)	71, 336, 411, 420, 453
HgaI	GACGC	2 cut(s)	425, 682
HhaI	GCGC	4 cut(s)	110, 347, 358, 406
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	2 cut(s)	283, 487
Hin6I	GCGC	4 cut(s)	108, 345, 356, 404
HinP1I	GCGC	4 cut(s)	108, 345, 356, 404
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	5 cut(s)	5, 290, 299, 380, 500
HpaII	CCGG	5 cut(s)	71, 336, 411, 420, 453
HphI	GGTGA	3 cut(s)	25, 30, 649
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	7 cut(s)	118, 175, 295, 385, 505, 567, 681
Hpy188III	TCNNGA	3 cut(s)	515, 526, 542
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	5 cut(s)	152, 275, 299, 380, 398
HpyAV	CCTTC	6 cut(s)	139, 180, 202, 421, 628, 658
HpyCH4III	ACNGT	1 cut(s)	717
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	647, 670
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 353, 416, 556
HpyF3I	CTNAG	5 cut(s)	504, 555, 576, 595, 732
HpySE526I	ACGT	1 cut(s)	235
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	283, 487
HspAI	GCGC	4 cut(s)	108, 345, 356, 404
KroI	GCCGGC	2 cut(s)	419, 452
KroNI	GCCGGC	2 cut(s)	421, 454
KspI	CCGCGG	2 cut(s)	88, 267
Kzo9I	GATC	2 cut(s)	285, 591
LmnI	GCTCC	2 cut(s)	332, 497
Lsp1109I	GCAGC	2 cut(s)	378, 601
LweI	GCATC	2 cut(s)	57, 367
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	709, 717
MalI	GATC	2 cut(s)	287, 593
MboI	GATC	2 cut(s)	285, 591
MboII	GAAGA	2 cut(s)	154, 382
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	3 cut(s)	510, 525, 561
MlyI	GAGTC	3 cut(s)	284, 293, 374
MmeI	TCCRAC	7 cut(s)	33, 141, 198, 270, 276, 318, 408
MreI	CGCCGGCG	1 cut(s)	419
MroNI	GCCGGC	2 cut(s)	419, 452
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	3 cut(s)	87, 266, 614
MspI	CCGG	5 cut(s)	71, 336, 411, 420, 453
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	5 cut(s)	87, 108, 266, 356, 404
MwoI	GCNNNNNNNGC	4 cut(s)	266, 353, 416, 556
NaeI	GCCGGC	2 cut(s)	421, 454
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	2 cut(s)	285, 591
NgoMIV	GCCGGC	2 cut(s)	419, 452
NlaIII	CATG	2 cut(s)	283, 487
NlaIV	GGNNCC	3 cut(s)	94, 340, 493
NmuCI	GTSAC	1 cut(s)	709
OliI	CACNNNNGTG	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 294
PdiI	GCCGGC	2 cut(s)	421, 454
PfeI	GAWTC	2 cut(s)	5, 500
Ple19I	CGATCG	1 cut(s)	288
PleI	GAGTC	3 cut(s)	284, 293, 374
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	3 cut(s)	284, 293, 374
Ppu21I	YACGTR	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	93
Psp124BI	GAGCTC	2 cut(s)	510, 561
Psp5II	RGGWCCY	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	317
PspCI	CACGTG	1 cut(s)	236
PspFI	CCCAGC	2 cut(s)	323, 341
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	3 cut(s)	94, 340, 493
PspPI	GGNCC	5 cut(s)	93, 321, 338, 450, 621
PspPPI	RGGWCCY	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	591
PvuI	CGATCG	1 cut(s)	288
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	2 cut(s)	510, 561
SacII	CCGCGG	2 cut(s)	88, 267
SalI	GTCGAC	1 cut(s)	377
Sau3AI	GATC	2 cut(s)	285, 591
Sau96I	GGNCC	5 cut(s)	93, 321, 338, 450, 621
SchI	GAGTC	3 cut(s)	284, 293, 374
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	3 cut(s)	510, 525, 561
SfaNI	GCATC	2 cut(s)	57, 367
Sfr303I	CCGCGG	2 cut(s)	88, 267
SgrAI	CRCCGGYG	1 cut(s)	419
SgrBI	CCGCGG	2 cut(s)	88, 267
SinI	GGWCC	2 cut(s)	93, 621
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SstI	GAGCTC	2 cut(s)	510, 561
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	2 cut(s)	483, 624
TaaI	ACNGT	1 cut(s)	717
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	7 cut(s)	147, 165, 180, 288, 378, 393, 516
TauI	GCSGC	9 cut(s)	108, 263, 266, 269, 350, 353, 356, 459, 462
TfiI	GAWTC	2 cut(s)	5, 500
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	2 cut(s)	366, 614
Tsp45I	GTSAC	1 cut(s)	709
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	720
VpaK11BI	GGWCC	2 cut(s)	93, 621
XmiI	GTMKAC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.