Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010378

Physical Location & Seq

Genomic Coordinates Reverse (-)

13050002 .. 13051231

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0097500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATGGATGGATCGTGGACTGCAGCTGTGATGCGGCGAATTCACGAGCGCGTAGTTGGATCCAGCCGTACTGCTGCTATCTCCTCCACCAGTCATGTGTGGCTTCTCGGCGTTTGCTATAAGTTCGATGAGTCCGAGTCCGCTCCACTTGCATTCGAACACGATTTCTCGTCGAGAATCTTGATGACGTATCGAAGAGGATTCGATTCGATTGAGGCTGGGGATTCCAAGTGTTTTAGCAGCGATGTGAATTGGGGGTGTATGATTCGGAGCAGTCAGATGCTTGTGGCTCAGGCATTGCTTTTCCACAGGTTGGGAAGGTCTTGGAGGCGGCCTCTCGACAAGTCTTGCGGCTTGGATCAAGAGTATGTTGAGATCTTGCGTCAATTTGGTGATTCCGAAGCTGCGGCTTTCTCCATCCACAATCTGATTGAGGCTGGCAAGGCTTATAACCTTGCTGCCGGTTCCTGGGTTGGCCCTTATGCTATGTGCCGCTCCTGGGAGACTCTTGTGTGCAAGCAGAGGGAGGCCGAGGCGGCGGCAGCAGCTCAGGAGCTTGATGAACAGCCACTGCCGATGGCTGTTTATATTGTTTCTGGAGACGAAAATGGGGAGAGAGGCGGTGCTCCGGTTGTGTGTGTTGAAGATGCATTTAGACATTGCTCTGAGTTTTCGAGAGGTCGAGTTGATTGGACGCCGATTCTTTTGCTGGTTCCTCTGGTTCTTGGACTCGAAGAACTCAATCCCAGGTACATTCCATCCTTGCGAGCTACGTTTACCTTTCCTCAGAGTGTTGGCATCATGGGTGGCAGACCTGGTGTATCAACTTACATTATTGGAGTGCAAGATGAAAATGCAATTTACCTTGATCCACATCTAGTTCAGCCTGTAGTCAATTTGAGTAGTAATGATTTAGATAGTGATGCTACTTCGTCTTACCACTGCAATGTTATACGCCACATTCCTTTAGATACAATTGATCCATCCCTGGCAATTGGATTCTATTGCCGTGACAAAGATGATTTTGATGATTTTTGTCTACGAGCTTCGAAGCTGGCAGATGAATCAAATGGTGCTCCACTGTTTACTGTGAGTGCTGAAACACATAATTTGTCCAAGCCACCTAGCCAGAGTGATGATGATTTGGGTGATAATGGTGGCGATCAAAACAATGAAGATGCAGATGGAGATGGAAGCGCACATGAAGAAGATGATTGGCAACTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

409

Amino Acids

45.09

Weight (kDa)

4.61

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C54	PF03416	51 - 346	1.3e-89	Peptidase C54 catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43700
fragaria_vesca	FvH4_2g14020 FvH4_2g14020
malus_domestica	MD05G1022300.v1.1 MD10G1023800.v1.1
prunus_persica	Prupe.8G026300_v2.0.a1
pyrus_communis	pycom05g01310 pycom10g01570
rosa_chinensis	RchiOBHm_Chr6g0275921
rosa_laevigata	RLG00000013423
rosa_multiflora	Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004
rosa_roxburghii	Rroxscaffold_7G00192770
rosa_rugosa	Rorug06G0097400 Rorug06G0097500 Rorug06G0097600
rosa_samantha	Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400
rosa_wichuraiana	Rw6G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	2 cut(s)	143, 495
AccI	GTMKAC	1 cut(s)	1039
AccII	CGCG	1 cut(s)	51
AciI	CCGC	9 cut(s)	34, 141, 331, 351, 407, 493, 536, 539, 621
AclWI	GGATC	6 cut(s)	19, 54, 67, 366, 863, 974
AcsI	RAATTY	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	695
AfaI	GTAC	2 cut(s)	70, 752
AfiI	CCNNNNNNNGG	3 cut(s)	313, 468, 499
AgsI	TTSAA	1 cut(s)	644
AjnI	CCWGG	5 cut(s)	467, 497, 746, 814, 987
AluBI	AGCT	7 cut(s)	26, 404, 548, 556, 770, 1046, 1054
AluI	AGCT	7 cut(s)	26, 404, 548, 556, 770, 1046, 1054
Alw21I	GWGCWC	2 cut(s)	628, 1078
Alw26I	GTCTC	2 cut(s)	497, 594
AlwI	GGATC	6 cut(s)	19, 54, 67, 366, 863, 974
AlwNI	CAGNNNCTG	1 cut(s)	571
AoxI	GGCC	3 cut(s)	332, 475, 528
ApeKI	GCWGC	7 cut(s)	23, 74, 240, 404, 458, 542, 545
ApoI	RAATTY	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	51, 1199
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	404, 1160
AsuII	TTCGAA	2 cut(s)	156, 1049
BamHI	GGATCC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	2 cut(s)	628, 1078
BbvI	GCAGC	7 cut(s)	35, 61, 252, 391, 445, 554, 557
BccI	CCATC	7 cut(s)	2, 425, 571, 766, 991, 1178, 1184
BceAI	ACGGC	2 cut(s)	51, 993
BcgI	CGANNNNNNTGC	2 cut(s)	688, 722
BciT130I	CCWGG	5 cut(s)	469, 499, 748, 816, 989
BcoDI	GTCTC	2 cut(s)	497, 594
BfaI	CTAG	2 cut(s)	878, 1125
BfmI	CTRYAG	2 cut(s)	21, 888
BglI	GCCNNNNNGGC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	375
Bme1390I	CCNGG	5 cut(s)	469, 499, 748, 816, 989
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	3 cut(s)	61, 466, 714
BmrFI	CCNGG	5 cut(s)	469, 499, 748, 816, 989
BmsI	GCATC	6 cut(s)	21, 270, 637, 807, 913, 1168
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	2 cut(s)	291, 549
Bpu14I	TTCGAA	2 cut(s)	156, 1049
BsaBI	GATNNNNATC	1 cut(s)	873
BsaHI	GRCGYC	1 cut(s)	695
BsaJI	CCNNGG	5 cut(s)	468, 498, 531, 746, 987
BsaWI	WCCGGW	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 468, 499
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	3 cut(s)	296, 658, 952
Bse8I	GATNNNNATC	1 cut(s)	873
BseBI	CCWGG	5 cut(s)	469, 499, 748, 816, 989
BseDI	CCNNGG	5 cut(s)	468, 498, 531, 746, 987
BseGI	GGATG	4 cut(s)	13, 417, 758, 983
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	3 cut(s)	313, 468, 499
BseMI	GCAATG	3 cut(s)	296, 658, 952
BseMII	CTCAG	4 cut(s)	305, 563, 657, 800
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	2 cut(s)	73, 1214
BseXI	GCAGC	7 cut(s)	35, 61, 252, 391, 445, 554, 557
BseYI	CCCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	334, 477, 530
BsiHKAI	GWGCWC	2 cut(s)	628, 1078
BsiSI	CCGG	2 cut(s)	462, 629
BslI	CCNNNNNNNGG	3 cut(s)	313, 468, 499
BsmAI	GTCTC	2 cut(s)	497, 594
BsmBI	CGTCTC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	334, 477, 530
Bsp119I	TTCGAA	2 cut(s)	156, 1049
Bsp1286I	GDGCHC	2 cut(s)	628, 1078
Bsp143I	GATC	7 cut(s)	11, 59, 358, 375, 868, 979, 1162
BspACI	CCGC	9 cut(s)	34, 141, 331, 351, 407, 493, 536, 539, 621
BspANI	GGCC	3 cut(s)	334, 477, 530
BspCNI	CTCAG	4 cut(s)	304, 562, 658, 799
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	61, 466, 714
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	6 cut(s)	19, 54, 67, 366, 863, 974
BspT104I	TTCGAA	2 cut(s)	156, 1049
BsrBI	CCGCTC	2 cut(s)	143, 495
BsrDI	GCAATG	3 cut(s)	296, 658, 952
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	5 cut(s)	468, 498, 531, 746, 987
BssMI	GATC	7 cut(s)	11, 59, 358, 375, 868, 979, 1162
BssNI	GRCGYC	1 cut(s)	695
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	5 cut(s)	469, 499, 748, 816, 989
Bst4CI	ACNGT	2 cut(s)	1083, 1090
Bst6I	CTCTTC	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	695
BstBI	TTCGAA	2 cut(s)	156, 1049
BstC8I	GCNNGC	4 cut(s)	439, 518, 768, 1056
BstDEI	CTNAG	4 cut(s)	291, 549, 666, 786
BstF5I	GGATG	4 cut(s)	13, 417, 758, 983
BstFNI	CGCG	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	51, 1199
BstKTI	GATC	7 cut(s)	14, 62, 361, 378, 871, 982, 1165
BstMAI	GTCTC	2 cut(s)	497, 594
BstMBI	GATC	7 cut(s)	11, 59, 358, 375, 868, 979, 1162
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 443, 536, 542, 545
BstNI	CCWGG	5 cut(s)	469, 499, 748, 816, 989
BstSCI	CCNGG	5 cut(s)	467, 497, 746, 814, 987
BstSFI	CTRYAG	2 cut(s)	21, 888
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	7 cut(s)	35, 61, 252, 391, 445, 554, 557
BstX2I	RGATCY	2 cut(s)	59, 375
BstYI	RGATCY	2 cut(s)	59, 375
BsuRI	GGCC	3 cut(s)	334, 477, 530
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	13, 417, 758, 983
BtsI	GCAGTG	2 cut(s)	569, 940
BtsIMutI	CAGTG	3 cut(s)	569, 940, 1079
Cac8I	GCNNGC	4 cut(s)	439, 518, 768, 1056
CaiI	CAGNNNCTG	1 cut(s)	571
CfoI	GCGC	2 cut(s)	51, 1199
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	2 cut(s)	371, 703
CsiI	ACCWGGT	1 cut(s)	814
Csp6I	GTAC	2 cut(s)	69, 751
CviAII	CATG	3 cut(s)	95, 802, 1202
CviQI	GTAC	2 cut(s)	69, 751
DdeI	CTNAG	4 cut(s)	291, 549, 666, 786
DpnI	GATC	7 cut(s)	13, 61, 360, 377, 870, 981, 1164
DpnII	GATC	7 cut(s)	11, 59, 358, 375, 868, 979, 1162
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	39
EcoRII	CCWGG	5 cut(s)	467, 497, 746, 814, 987
EcoT22I	ATGCAT	1 cut(s)	652
Esp3I	CGTCTC	1 cut(s)	594
FaeI	CATG	3 cut(s)	98, 805, 1205
FatI	CATG	3 cut(s)	94, 801, 1201
FblI	GTMKAC	1 cut(s)	1039
FokI	GGATG	4 cut(s)	20, 404, 745, 970
FspBI	CTAG	2 cut(s)	878, 1125
GlaI	GCGC	2 cut(s)	50, 1198
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	3 cut(s)	334, 477, 530
HapII	CCGG	2 cut(s)	462, 629
HgaI	GACGC	2 cut(s)	371, 703
HhaI	GCGC	2 cut(s)	51, 1199
Hin1I	GRCGYC	1 cut(s)	695
Hin1II	CATG	3 cut(s)	98, 805, 1205
Hin6I	GCGC	2 cut(s)	49, 1197
HinP1I	GCGC	2 cut(s)	49, 1197
HpaII	CCGG	2 cut(s)	462, 629
HphI	GGTGA	2 cut(s)	404, 1160
Hpy166II	GTNNAC	4 cut(s)	18, 777, 1040, 1086
Hpy188I	TCNGA	8 cut(s)	136, 270, 279, 400, 429, 667, 789, 1229
Hpy188III	TCNNGA	8 cut(s)	44, 174, 181, 338, 362, 551, 597, 675
Hpy8I	GTNNAC	4 cut(s)	18, 777, 1040, 1086
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	2 cut(s)	1083, 1090
HpyCH4IV	ACGT	2 cut(s)	188, 773
HpyCH4V	TGCA	8 cut(s)	23, 152, 516, 650, 844, 857, 945, 1181
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 443, 536, 542, 545
HpyF3I	CTNAG	4 cut(s)	291, 549, 666, 786
HpySE526I	ACGT	2 cut(s)	188, 773
Hsp92I	GRCGYC	1 cut(s)	695
Hsp92II	CATG	3 cut(s)	98, 805, 1205
HspAI	GCGC	2 cut(s)	49, 1197
Kzo9I	GATC	7 cut(s)	11, 59, 358, 375, 868, 979, 1162
LmnI	GCTCC	6 cut(s)	148, 270, 500, 553, 631, 1081
Lsp1109I	GCAGC	7 cut(s)	35, 61, 252, 391, 445, 554, 557
LweI	GCATC	6 cut(s)	21, 270, 637, 807, 913, 1168
MabI	ACCWGGT	1 cut(s)	814
MaeI	CTAG	2 cut(s)	878, 1125
MaeII	ACGT	2 cut(s)	188, 773
MaeIII	GTNAC	1 cut(s)	1010
MalI	GATC	7 cut(s)	13, 61, 360, 377, 870, 981, 1164
MbiI	CCGCTC	2 cut(s)	143, 495
MboI	GATC	7 cut(s)	11, 59, 358, 375, 868, 979, 1162
MboII	GAAGA	6 cut(s)	207, 656, 746, 1187, 1217, 1220
MfeI	CAATTG	2 cut(s)	975, 993
MflI	RGATCY	2 cut(s)	59, 375
MhlI	GDGCHC	2 cut(s)	628, 1078
MluCI	AATT	8 cut(s)	39, 250, 386, 858, 895, 975, 993, 1108
MlyI	GAGTC	4 cut(s)	140, 146, 499, 723
MmeI	TCCRAC	1 cut(s)	37
Mph1103I	ATGCAT	1 cut(s)	652
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	462, 629
MspR9I	CCNGG	5 cut(s)	469, 499, 748, 816, 989
MunI	CAATTG	2 cut(s)	975, 993
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	5 cut(s)	469, 499, 748, 816, 989
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	5 cut(s)	149, 443, 536, 542, 545
NdeII	GATC	7 cut(s)	11, 59, 358, 375, 868, 979, 1162
NlaIII	CATG	3 cut(s)	98, 805, 1205
NlaIV	GGNNCC	3 cut(s)	61, 466, 714
NmeAIII	GCCGAG	2 cut(s)	87, 556
NmuCI	GTSAC	1 cut(s)	1010
NsiI	ATGCAT	1 cut(s)	652
NspV	TTCGAA	2 cut(s)	156, 1049
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	9 cut(s)	177, 201, 206, 224, 265, 395, 700, 999, 1064
PflMI	CCANNNNNTGG	1 cut(s)	313
PleI	GAGTC	4 cut(s)	139, 145, 499, 723
PpsI	GAGTC	4 cut(s)	139, 145, 499, 723
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	5 cut(s)	467, 497, 746, 814, 987
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	5 cut(s)	467, 497, 746, 814, 987
PspN4I	GGNNCC	3 cut(s)	61, 466, 714
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	571
PsuI	RGATCY	2 cut(s)	59, 375
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	70, 752
RsaNI	GTAC	2 cut(s)	69, 751
RseI	CAYNNNNRTG	1 cut(s)	945
Sau3AI	GATC	7 cut(s)	11, 59, 358, 375, 868, 979, 1162
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	4 cut(s)	140, 146, 499, 723
ScrFI	CCNGG	5 cut(s)	469, 499, 748, 816, 989
SduI	GDGCHC	2 cut(s)	628, 1078
SexAI	ACCWGGT	1 cut(s)	814
SfaNI	GCATC	6 cut(s)	21, 270, 637, 807, 913, 1168
SfcI	CTRYAG	2 cut(s)	21, 888
SfuI	TTCGAA	2 cut(s)	156, 1049
SmiMI	CAYNNNNRTG	1 cut(s)	945
Sse9I	AATT	8 cut(s)	39, 250, 386, 858, 895, 975, 993, 1108
SsiI	CCGC	9 cut(s)	34, 141, 331, 351, 407, 493, 536, 539, 621
SspMI	CTAG	2 cut(s)	878, 1125
StyD4I	CCNGG	5 cut(s)	467, 497, 746, 814, 987
TaaI	ACNGT	2 cut(s)	1083, 1090
TaiI	ACGT	2 cut(s)	191, 776
TasI	AATT	8 cut(s)	39, 250, 386, 858, 895, 975, 993, 1108
TauI	GCSGC	7 cut(s)	37, 334, 354, 410, 495, 539, 542
TfiI	GAWTC	9 cut(s)	177, 201, 206, 224, 265, 395, 700, 999, 1064
TscAI	CASTG	3 cut(s)	576, 947, 1086
TseFI	GTSAC	1 cut(s)	1010
TseI	GCWGC	7 cut(s)	23, 74, 240, 404, 458, 542, 545
Tsp45I	GTSAC	1 cut(s)	1010
TspDTI	ATGAA	5 cut(s)	576, 864, 1077, 1188, 1218
TspRI	CASTG	3 cut(s)	576, 947, 1086
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	1039
XspI	CTAG	2 cut(s)	878, 1125
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.