Transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G43700 |
| fragaria_vesca | FvH4_2g14020 FvH4_2g14020 |
| malus_domestica | MD05G1022300.v1.1 MD10G1023800.v1.1 |
| prunus_persica | Prupe.8G026300_v2.0.a1 |
| pyrus_communis | pycom05g01310 pycom10g01570 |
| rosa_chinensis | RchiOBHm_Chr6g0275921 |
| rosa_laevigata | RLG00000013423 |
| rosa_multiflora | Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004 |
| rosa_roxburghii | Rroxscaffold_7G00192770 |
| rosa_rugosa | Rorug06G0097400 Rorug06G0097500 Rorug06G0097600 |
| rosa_samantha | Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400 |
| rosa_wichuraiana | Rw6G018220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 215, 416 |
| AccBSI | CCGCTC | 1 cut(s) | 314 |
| AccI | GTMKAC | 1 cut(s) | 336 |
| AccII | CGCG | 2 cut(s) | 84, 105 |
| AccIII | TCCGGA | 1 cut(s) | 368 |
| AclWI | GGATC | 1 cut(s) | 560 |
| AcoI | YGGCCR | 1 cut(s) | 424 |
| AcuI | CTGAAG | 1 cut(s) | 623 |
| AcvI | CACGTG | 1 cut(s) | 212 |
| AcyI | GRCGYC | 3 cut(s) | 216, 375, 417 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 83, 99, 212, 288, 384, 419, 591 |
| AjnI | CCWGG | 1 cut(s) | 287 |
| AluBI | AGCT | 8 cut(s) | 27, 297, 469, 511, 520, 545, 560, 616 |
| AluI | AGCT | 8 cut(s) | 27, 297, 469, 511, 520, 545, 560, 616 |
| Alw21I | GWGCWC | 2 cut(s) | 471, 522 |
| Alw26I | GTCTC | 3 cut(s) | 366, 385, 488 |
| AlwI | GGATC | 1 cut(s) | 560 |
| Aor13HI | TCCGGA | 1 cut(s) | 368 |
| AoxI | GGCC | 4 cut(s) | 290, 355, 410, 424 |
| ApeKI | GCWGC | 1 cut(s) | 324 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 440, 472 |
| AscI | GGCGCGCC | 1 cut(s) | 103 |
| AspLEI | GCGC | 4 cut(s) | 105, 107, 218, 419 |
| AspS9I | GGNCC | 3 cut(s) | 291, 411, 582 |
| AsuC2I | CCSGG | 2 cut(s) | 385, 414 |
| AsuHPI | GGTGA | 2 cut(s) | 27, 610 |
| AvaII | GGWCC | 1 cut(s) | 582 |
| BanI | GGYRCC | 2 cut(s) | 215, 416 |
| BanII | GRGCYC | 2 cut(s) | 471, 522 |
| BbrPI | CACGTG | 1 cut(s) | 212 |
| Bbv12I | GWGCWC | 2 cut(s) | 471, 522 |
| BbvI | GCAGC | 1 cut(s) | 336 |
| BccI | CCATC | 2 cut(s) | 473, 503 |
| BceAI | ACGGC | 4 cut(s) | 224, 362, 370, 466 |
| BciT130I | CCWGG | 1 cut(s) | 289 |
| BcnI | CCSGG | 2 cut(s) | 385, 414 |
| BcoDI | GTCTC | 3 cut(s) | 366, 385, 488 |
| BfoI | RGCGCY | 2 cut(s) | 219, 420 |
| BisI | GCNGC | 7 cut(s) | 85, 88, 237, 312, 325, 424, 576 |
| BlpI | GCTNAGC | 1 cut(s) | 516 |
| BlsI | GCNGC | 7 cut(s) | 86, 89, 238, 313, 326, 425, 577 |
| Bme1390I | CCNGG | 3 cut(s) | 289, 385, 414 |
| Bme18I | GGWCC | 1 cut(s) | 582 |
| BmgT120I | GGNCC | 3 cut(s) | 291, 411, 582 |
| BmiI | GGNNCC | 4 cut(s) | 91, 217, 418, 454 |
| BmrFI | CCNGG | 3 cut(s) | 289, 385, 414 |
| BmsI | GCATC | 1 cut(s) | 54 |
| BpmI | CTGGAG | 1 cut(s) | 638 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 516 |
| BpuEI | CTTGAG | 1 cut(s) | 470 |
| BpuMI | CCSGG | 2 cut(s) | 385, 414 |
| Bsa29I | ATCGAT | 1 cut(s) | 255 |
| BsaAI | YACGTR | 1 cut(s) | 212 |
| BsaHI | GRCGYC | 3 cut(s) | 216, 375, 417 |
| BsaI | GGTCTC | 1 cut(s) | 488 |
| BsaJI | CCNNGG | 5 cut(s) | 82, 287, 358, 444, 585 |
| BsaWI | WCCGGW | 1 cut(s) | 368 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 83, 99, 212, 288, 384, 419, 591 |
| Bse118I | RCCGGY | 2 cut(s) | 99, 419 |
| BseAI | TCCGGA | 1 cut(s) | 368 |
| BseBI | CCWGG | 1 cut(s) | 289 |
| BseCI | ATCGAT | 1 cut(s) | 255 |
| BseDI | CCNNGG | 5 cut(s) | 82, 287, 358, 444, 585 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 83, 99, 212, 288, 384, 419, 591 |
| BseMII | CTCAG | 2 cut(s) | 456, 507 |
| BsePI | GCGCGC | 1 cut(s) | 103 |
| BseRI | GAGGAG | 9 cut(s) | 22, 34, 112, 143, 146, 175, 220, 262, 289 |
| BseXI | GCAGC | 1 cut(s) | 336 |
| BseYI | CCCAGC | 1 cut(s) | 293 |
| BsgI | GTGCAG | 1 cut(s) | 650 |
| Bsh1236I | CGCG | 2 cut(s) | 84, 105 |
| Bsh1285I | CGRYCG | 1 cut(s) | 255 |
| BshFI | GGCC | 4 cut(s) | 292, 357, 412, 426 |
| BshNI | GGYRCC | 2 cut(s) | 215, 416 |
| BshVI | ATCGAT | 1 cut(s) | 255 |
| BsiEI | CGRYCG | 1 cut(s) | 255 |
| BsiHKAI | GWGCWC | 2 cut(s) | 471, 522 |
| BsiSI | CCGG | 6 cut(s) | 68, 100, 369, 384, 414, 420 |
| BslFI | GGGAC | 2 cut(s) | 188, 227 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 83, 99, 212, 288, 384, 419, 591 |
| BsmAI | GTCTC | 3 cut(s) | 366, 385, 488 |
| BsmBI | CGTCTC | 2 cut(s) | 366, 385 |
| BsmFI | GGGAC | 2 cut(s) | 188, 227 |
| BsnI | GGCC | 4 cut(s) | 292, 357, 412, 426 |
| Bso31I | GGTCTC | 1 cut(s) | 488 |
| Bsp1286I | GDGCHC | 2 cut(s) | 471, 522 |
| Bsp13I | TCCGGA | 1 cut(s) | 368 |
| Bsp143I | GATC | 2 cut(s) | 252, 552 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 516 |
| Bsp19I | CCATGG | 1 cut(s) | 444 |
| BspANI | GGCC | 4 cut(s) | 292, 357, 412, 426 |
| BspCNI | CTCAG | 2 cut(s) | 457, 508 |
| BspDI | ATCGAT | 1 cut(s) | 255 |
| BspEI | TCCGGA | 1 cut(s) | 368 |
| BspFNI | CGCG | 2 cut(s) | 84, 105 |
| BspLI | GGNNCC | 4 cut(s) | 91, 217, 418, 454 |
| BspPI | GGATC | 1 cut(s) | 560 |
| BspT107I | GGYRCC | 2 cut(s) | 215, 416 |
| BspTNI | GGTCTC | 1 cut(s) | 488 |
| BsrBI | CCGCTC | 1 cut(s) | 314 |
| BsrFI | RCCGGY | 2 cut(s) | 99, 419 |
| BssAI | RCCGGY | 2 cut(s) | 99, 419 |
| BssECI | CCNNGG | 5 cut(s) | 82, 287, 358, 444, 585 |
| BssHII | GCGCGC | 1 cut(s) | 103 |
| BssMI | GATC | 2 cut(s) | 252, 552 |
| BssNI | GRCGYC | 3 cut(s) | 216, 375, 417 |
| BssT1I | CCWWGG | 2 cut(s) | 444, 585 |
| Bst2UI | CCWGG | 1 cut(s) | 289 |
| Bst4CI | ACNGT | 1 cut(s) | 678 |
| Bst6I | CTCTTC | 1 cut(s) | 164 |
| BstACI | GRCGYC | 3 cut(s) | 216, 375, 417 |
| BstBAI | YACGTR | 1 cut(s) | 212 |
| BstC8I | GCNNGC | 3 cut(s) | 105, 421, 513 |
| BstDEI | CTNAG | 3 cut(s) | 465, 516, 556 |
| BstDSI | CCRYGG | 2 cut(s) | 82, 444 |
| BstFNI | CGCG | 2 cut(s) | 84, 105 |
| BstH2I | RGCGCY | 2 cut(s) | 219, 420 |
| BstHHI | GCGC | 4 cut(s) | 105, 107, 218, 419 |
| BstKTI | GATC | 2 cut(s) | 255, 555 |
| BstMAI | GTCTC | 3 cut(s) | 366, 385, 488 |
| BstMBI | GATC | 2 cut(s) | 252, 552 |
| BstMCI | CGRYCG | 1 cut(s) | 255 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 311, 423, 517 |
| BstNI | CCWGG | 1 cut(s) | 289 |
| BstSCI | CCNGG | 3 cut(s) | 287, 383, 412 |
| BstUI | CGCG | 2 cut(s) | 84, 105 |
| BstV1I | GCAGC | 1 cut(s) | 336 |
| BstX2I | RGATCY | 1 cut(s) | 552 |
| BstYI | RGATCY | 1 cut(s) | 552 |
| Bsu15I | ATCGAT | 1 cut(s) | 255 |
| BsuRI | GGCC | 4 cut(s) | 292, 357, 412, 426 |
| BsuTUI | ATCGAT | 1 cut(s) | 255 |
| BtgI | CCRYGG | 2 cut(s) | 82, 444 |
| BtsIMutI | CAGTG | 1 cut(s) | 674 |
| Cac8I | GCNNGC | 3 cut(s) | 105, 421, 513 |
| CfoI | GCGC | 4 cut(s) | 105, 107, 218, 419 |
| Cfr10I | RCCGGY | 2 cut(s) | 99, 419 |
| Cfr13I | GGNCC | 3 cut(s) | 291, 411, 582 |
| Cfr42I | CCGCGG | 1 cut(s) | 85 |
| ClaI | ATCGAT | 1 cut(s) | 255 |
| CseI | GACGC | 2 cut(s) | 383, 643 |
| CviAII | CATG | 2 cut(s) | 247, 445 |
| DdeI | CTNAG | 3 cut(s) | 465, 516, 556 |
| DinI | GGCGCC | 2 cut(s) | 217, 418 |
| DpnI | GATC | 2 cut(s) | 254, 554 |
| DpnII | GATC | 2 cut(s) | 252, 552 |
| EaeI | YGGCCR | 1 cut(s) | 424 |
| Eam1104I | CTCTTC | 1 cut(s) | 164 |
| EarI | CTCTTC | 1 cut(s) | 164 |
| EciI | GGCGGA | 4 cut(s) | 119, 223, 265, 292 |
| Ecl136II | GAGCTC | 2 cut(s) | 469, 520 |
| Eco130I | CCWWGG | 2 cut(s) | 444, 585 |
| Eco24I | GRGCYC | 2 cut(s) | 471, 522 |
| Eco31I | GGTCTC | 1 cut(s) | 488 |
| Eco47I | GGWCC | 1 cut(s) | 582 |
| Eco53kI | GAGCTC | 2 cut(s) | 469, 520 |
| Eco57I | CTGAAG | 1 cut(s) | 623 |
| Eco72I | CACGTG | 1 cut(s) | 212 |
| EcoICRI | GAGCTC | 2 cut(s) | 469, 520 |
| EcoRII | CCWGG | 1 cut(s) | 287 |
| EcoT14I | CCWWGG | 2 cut(s) | 444, 585 |
| EcoT38I | GRGCYC | 2 cut(s) | 471, 522 |
| EgeI | GGCGCC | 2 cut(s) | 217, 418 |
| EheI | GGCGCC | 2 cut(s) | 217, 418 |
| ErhI | CCWWGG | 2 cut(s) | 444, 585 |
| Esp3I | CGTCTC | 2 cut(s) | 366, 385 |
| FaeI | CATG | 2 cut(s) | 250, 448 |
| FaiI | YATR | 4 cut(s) | 248, 435, 446, 606 |
| FaqI | GGGAC | 2 cut(s) | 188, 227 |
| FatI | CATG | 2 cut(s) | 246, 444 |
| FauI | CCCGC | 2 cut(s) | 213, 290 |
| FblI | GTMKAC | 1 cut(s) | 336 |
| Fnu4HI | GCNGC | 7 cut(s) | 85, 88, 237, 312, 325, 424, 576 |
| FriOI | GRGCYC | 2 cut(s) | 471, 522 |
| Fsp4HI | GCNGC | 7 cut(s) | 85, 88, 237, 312, 325, 424, 576 |
| GlaI | GCGC | 4 cut(s) | 104, 106, 217, 418 |
| GluI | GCNGC | 7 cut(s) | 85, 88, 237, 312, 325, 424, 576 |
| GsaI | CCCAGC | 1 cut(s) | 297 |
| GsuI | CTGGAG | 1 cut(s) | 638 |
| HaeII | RGCGCY | 2 cut(s) | 219, 420 |
| HaeIII | GGCC | 4 cut(s) | 292, 357, 412, 426 |
| HapII | CCGG | 6 cut(s) | 68, 100, 369, 384, 414, 420 |
| HgaI | GACGC | 2 cut(s) | 383, 643 |
| HhaI | GCGC | 4 cut(s) | 105, 107, 218, 419 |
| Hin1I | GRCGYC | 3 cut(s) | 216, 375, 417 |
| Hin1II | CATG | 2 cut(s) | 250, 448 |
| Hin6I | GCGC | 4 cut(s) | 103, 105, 216, 417 |
| HinP1I | GCGC | 4 cut(s) | 103, 105, 216, 417 |
| HincII | GTYRAC | 1 cut(s) | 337 |
| HindII | GTYRAC | 1 cut(s) | 337 |
| HinfI | GANTC | 6 cut(s) | 11, 260, 269, 338, 363, 461 |
| HpaII | CCGG | 6 cut(s) | 68, 100, 369, 384, 414, 420 |
| HphI | GGTGA | 2 cut(s) | 27, 610 |
| Hpy166II | GTNNAC | 1 cut(s) | 337 |
| Hpy188I | TCNGA | 8 cut(s) | 115, 172, 265, 343, 362, 466, 528, 642 |
| Hpy188III | TCNNGA | 5 cut(s) | 369, 476, 487, 503, 705 |
| Hpy8I | GTNNAC | 1 cut(s) | 337 |
| Hpy99I | CGWCG | 4 cut(s) | 149, 269, 338, 356 |
| HpyAV | CCTTC | 7 cut(s) | 136, 177, 199, 382, 466, 589, 619 |
| HpyCH4III | ACNGT | 1 cut(s) | 678 |
| HpyCH4IV | ACGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 2 cut(s) | 608, 631 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 311, 423, 517 |
| HpyF3I | CTNAG | 3 cut(s) | 465, 516, 556 |
| HpySE526I | ACGT | 1 cut(s) | 211 |
| Hsp92I | GRCGYC | 3 cut(s) | 216, 375, 417 |
| Hsp92II | CATG | 2 cut(s) | 250, 448 |
| HspAI | GCGC | 4 cut(s) | 103, 105, 216, 417 |
| KasI | GGCGCC | 2 cut(s) | 215, 416 |
| Kpn2I | TCCGGA | 1 cut(s) | 368 |
| KroI | GCCGGC | 1 cut(s) | 419 |
| KroNI | GCCGGC | 1 cut(s) | 421 |
| KspI | CCGCGG | 1 cut(s) | 85 |
| Kzo9I | GATC | 2 cut(s) | 252, 552 |
| LmnI | GCTCC | 3 cut(s) | 95, 302, 458 |
| Lsp1109I | GCAGC | 1 cut(s) | 336 |
| LweI | GCATC | 1 cut(s) | 54 |
| MaeII | ACGT | 1 cut(s) | 211 |
| MaeIII | GTNAC | 2 cut(s) | 670, 678 |
| MalI | GATC | 2 cut(s) | 254, 554 |
| MbiI | CCGCTC | 1 cut(s) | 314 |
| MboI | GATC | 2 cut(s) | 252, 552 |
| MboII | GAAGA | 2 cut(s) | 151, 340 |
| MflI | RGATCY | 1 cut(s) | 552 |
| MhlI | GDGCHC | 2 cut(s) | 471, 522 |
| Mly113I | GGCGCC | 2 cut(s) | 216, 417 |
| MlyI | GAGTC | 3 cut(s) | 254, 263, 332 |
| MmeI | TCCRAC | 5 cut(s) | 39, 138, 195, 288, 366 |
| MreI | CGCCGGCG | 1 cut(s) | 419 |
| MroI | TCCGGA | 1 cut(s) | 368 |
| MroNI | GCCGGC | 1 cut(s) | 419 |
| MspA1I | CMGCKG | 1 cut(s) | 84 |
| MspI | CCGG | 6 cut(s) | 68, 100, 369, 384, 414, 420 |
| MspR9I | CCNGG | 3 cut(s) | 289, 385, 414 |
| MvaI | CCWGG | 1 cut(s) | 289 |
| MvnI | CGCG | 2 cut(s) | 84, 105 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 311, 423, 517 |
| NaeI | GCCGGC | 1 cut(s) | 421 |
| NarI | GGCGCC | 2 cut(s) | 216, 417 |
| NciI | CCSGG | 2 cut(s) | 385, 414 |
| NcoI | CCATGG | 1 cut(s) | 444 |
| NdeII | GATC | 2 cut(s) | 252, 552 |
| NgoMIV | GCCGGC | 1 cut(s) | 419 |
| NlaIII | CATG | 2 cut(s) | 250, 448 |
| NlaIV | GGNNCC | 4 cut(s) | 91, 217, 418, 454 |
| NmuCI | GTSAC | 1 cut(s) | 670 |
| PalAI | GGCGCGCC | 1 cut(s) | 103 |
| PauI | GCGCGC | 1 cut(s) | 103 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 168, 261, 456 |
| PdiI | GCCGGC | 1 cut(s) | 421 |
| PfeI | GAWTC | 3 cut(s) | 11, 363, 461 |
| PflFI | GACNNNGTC | 1 cut(s) | 377 |
| PfoI | TCCNGGA | 1 cut(s) | 383 |
| PkrI | GCNGC | 7 cut(s) | 86, 89, 238, 313, 326, 425, 577 |
| Ple19I | CGATCG | 1 cut(s) | 255 |
| PleI | GAGTC | 3 cut(s) | 254, 263, 332 |
| PluTI | GGCGCC | 2 cut(s) | 219, 420 |
| PmaCI | CACGTG | 1 cut(s) | 212 |
| PmlI | CACGTG | 1 cut(s) | 212 |
| PpsI | GAGTC | 3 cut(s) | 254, 263, 332 |
| Ppu21I | YACGTR | 1 cut(s) | 212 |
| Psp124BI | GAGCTC | 2 cut(s) | 471, 522 |
| Psp6I | CCWGG | 1 cut(s) | 287 |
| PspCI | CACGTG | 1 cut(s) | 212 |
| PspFI | CCCAGC | 1 cut(s) | 293 |
| PspGI | CCWGG | 1 cut(s) | 287 |
| PspN4I | GGNNCC | 4 cut(s) | 91, 217, 418, 454 |
| PspPI | GGNCC | 3 cut(s) | 291, 411, 582 |
| PsuI | RGATCY | 1 cut(s) | 552 |
| PsyI | GACNNNGTC | 1 cut(s) | 377 |
| PteI | GCGCGC | 1 cut(s) | 103 |
| PvuI | CGATCG | 1 cut(s) | 255 |
| SacI | GAGCTC | 2 cut(s) | 471, 522 |
| SacII | CCGCGG | 1 cut(s) | 85 |
| SalI | GTCGAC | 1 cut(s) | 335 |
| SatI | GCNGC | 7 cut(s) | 85, 88, 237, 312, 325, 424, 576 |
| Sau3AI | GATC | 2 cut(s) | 252, 552 |
| Sau96I | GGNCC | 3 cut(s) | 291, 411, 582 |
| SchI | GAGTC | 3 cut(s) | 254, 263, 332 |
| ScrFI | CCNGG | 3 cut(s) | 289, 385, 414 |
| SduI | GDGCHC | 2 cut(s) | 471, 522 |
| SfaNI | GCATC | 1 cut(s) | 54 |
| SfoI | GGCGCC | 2 cut(s) | 217, 418 |
| Sfr303I | CCGCGG | 1 cut(s) | 85 |
| SgrAI | CRCCGGYG | 2 cut(s) | 99, 419 |
| SgrBI | CCGCGG | 1 cut(s) | 85 |
| SgsI | GGCGCGCC | 1 cut(s) | 103 |
| SinI | GGWCC | 1 cut(s) | 582 |
| SmlI | CTYRAG | 1 cut(s) | 485 |
| SmoI | CTYRAG | 1 cut(s) | 485 |
| SspDI | GGCGCC | 2 cut(s) | 215, 416 |
| SstI | GAGCTC | 2 cut(s) | 471, 522 |
| StyD4I | CCNGG | 3 cut(s) | 287, 383, 412 |
| StyI | CCWWGG | 2 cut(s) | 444, 585 |
| TaaI | ACNGT | 1 cut(s) | 678 |
| TaiI | ACGT | 1 cut(s) | 214 |
| TaqI | TCGA | 8 cut(s) | 144, 162, 177, 255, 336, 351, 459, 477 |
| TauI | GCSGC | 6 cut(s) | 87, 90, 239, 314, 426, 578 |
| TfiI | GAWTC | 3 cut(s) | 11, 363, 461 |
| TscAI | CASTG | 1 cut(s) | 681 |
| TseFI | GTSAC | 1 cut(s) | 670 |
| TseI | GCWGC | 1 cut(s) | 324 |
| Tsp45I | GTSAC | 1 cut(s) | 670 |
| TspGWI | ACGGA | 1 cut(s) | 322 |
| TspRI | CASTG | 1 cut(s) | 681 |
| Tth111I | GACNNNGTC | 1 cut(s) | 377 |
| VpaK11BI | GGWCC | 1 cut(s) | 582 |
| XmiI | GTMKAC | 1 cut(s) | 336 |