FvH4_2g14020
BZIP Family

Transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
12336540 .. 12340944
4405 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14020.t1

Sequence Viewer

Length: 708 bp
ATGGAAATGGATTCCAACAACCACAGCTTCTCCTCACCCACCTCCTCAAACGACATTGAGCAGATGCCGGAAACCCCCCACCGCGGCGGCTCCTACCACCGGCGCGCCCACTCCGACTTCTCCTCCTTCCGCCTCCCCAACTTCGACGACCTCCTCCTCTTCGACCCTTCCGACCTCGACCTCTCCTCCTTCCCCTCTCCCGTCCCGCCACGTGGCGCCACCTCCACCTCCTCCGCCGCCGTCCCCATGCCGATCGATGACTCCGACGACTCCTCCGCCTCCCGCCCCAGGCCCAGCTCCTCCGCCACCGCCGCTCATTTCCGCAGCCTCTCCGTCGACTCCGACTTCTTCGACGGCCTCGGATTCTCCGGAGACGCCGTCTCCGGGAAGGAAGTCGTTGGGGGTAAGAGGCCCGGCGCCGGCGGCCACAGGCATAGCAACTCCATGGACGGCTCCTTCGATTCTGAGCTCTCTCTCGATGGTCTCAAGAAGTCCATCACTCCTGATAAGCTCGCTGAGCTCTCTCTGATTGACCCCAAGAGAGCTAAAAGGATCTTAGCTAATAGGCAATCTGCGGCGAGGTCCAAGGAGAGGAAGGTGAGATATGCAAATGAGCTGGAGAGGAAGGTGCAGACGCTTCAGACAGAGGCTACCACTCTATCGGCACAGGTCACACTGTTACAGGTCTTGTATTTTCAGGCTTCTTGA

Protein Analysis

236

Amino Acids

25.46

Weight (kDa)

5.97

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 178 - 228 2.8e-07 Basic region leucine zipper
bZIP_1 PF00170 180 - 227 5.1e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 215, 416
AccBSI CCGCTC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 336
AccII CGCG 2 cut(s) 84, 105
AccIII TCCGGA 1 cut(s) 368
AclWI GGATC 1 cut(s) 560
AcoI YGGCCR 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 623
AcvI CACGTG 1 cut(s) 212
AcyI GRCGYC 3 cut(s) 216, 375, 417
AfiI CCNNNNNNNGG 7 cut(s) 83, 99, 212, 288, 384, 419, 591
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 8 cut(s) 27, 297, 469, 511, 520, 545, 560, 616
AluI AGCT 8 cut(s) 27, 297, 469, 511, 520, 545, 560, 616
Alw21I GWGCWC 2 cut(s) 471, 522
Alw26I GTCTC 3 cut(s) 366, 385, 488
AlwI GGATC 1 cut(s) 560
Aor13HI TCCGGA 1 cut(s) 368
AoxI GGCC 4 cut(s) 290, 355, 410, 424
ApeKI GCWGC 1 cut(s) 324
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AscI GGCGCGCC 1 cut(s) 103
AspLEI GCGC 4 cut(s) 105, 107, 218, 419
AspS9I GGNCC 3 cut(s) 291, 411, 582
AsuC2I CCSGG 2 cut(s) 385, 414
AsuHPI GGTGA 2 cut(s) 27, 610
AvaII GGWCC 1 cut(s) 582
BanI GGYRCC 2 cut(s) 215, 416
BanII GRGCYC 2 cut(s) 471, 522
BbrPI CACGTG 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 471, 522
BbvI GCAGC 1 cut(s) 336
BccI CCATC 2 cut(s) 473, 503
BceAI ACGGC 4 cut(s) 224, 362, 370, 466
BciT130I CCWGG 1 cut(s) 289
BcnI CCSGG 2 cut(s) 385, 414
BcoDI GTCTC 3 cut(s) 366, 385, 488
BfoI RGCGCY 2 cut(s) 219, 420
BisI GCNGC 7 cut(s) 85, 88, 237, 312, 325, 424, 576
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 7 cut(s) 86, 89, 238, 313, 326, 425, 577
Bme1390I CCNGG 3 cut(s) 289, 385, 414
Bme18I GGWCC 1 cut(s) 582
BmgT120I GGNCC 3 cut(s) 291, 411, 582
BmiI GGNNCC 4 cut(s) 91, 217, 418, 454
BmrFI CCNGG 3 cut(s) 289, 385, 414
BmsI GCATC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 638
Bpu1102I GCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 385, 414
Bsa29I ATCGAT 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 212
BsaHI GRCGYC 3 cut(s) 216, 375, 417
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 5 cut(s) 82, 287, 358, 444, 585
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 7 cut(s) 83, 99, 212, 288, 384, 419, 591
Bse118I RCCGGY 2 cut(s) 99, 419
BseAI TCCGGA 1 cut(s) 368
BseBI CCWGG 1 cut(s) 289
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 5 cut(s) 82, 287, 358, 444, 585
BseLI CCNNNNNNNGG 7 cut(s) 83, 99, 212, 288, 384, 419, 591
BseMII CTCAG 2 cut(s) 456, 507
BsePI GCGCGC 1 cut(s) 103
BseRI GAGGAG 9 cut(s) 22, 34, 112, 143, 146, 175, 220, 262, 289
BseXI GCAGC 1 cut(s) 336
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 650
Bsh1236I CGCG 2 cut(s) 84, 105
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 4 cut(s) 292, 357, 412, 426
BshNI GGYRCC 2 cut(s) 215, 416
BshVI ATCGAT 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 2 cut(s) 471, 522
BsiSI CCGG 6 cut(s) 68, 100, 369, 384, 414, 420
BslFI GGGAC 2 cut(s) 188, 227
BslI CCNNNNNNNGG 7 cut(s) 83, 99, 212, 288, 384, 419, 591
BsmAI GTCTC 3 cut(s) 366, 385, 488
BsmBI CGTCTC 2 cut(s) 366, 385
BsmFI GGGAC 2 cut(s) 188, 227
BsnI GGCC 4 cut(s) 292, 357, 412, 426
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 2 cut(s) 471, 522
Bsp13I TCCGGA 1 cut(s) 368
Bsp143I GATC 2 cut(s) 252, 552
Bsp1720I GCTNAGC 1 cut(s) 516
Bsp19I CCATGG 1 cut(s) 444
BspANI GGCC 4 cut(s) 292, 357, 412, 426
BspCNI CTCAG 2 cut(s) 457, 508
BspDI ATCGAT 1 cut(s) 255
BspEI TCCGGA 1 cut(s) 368
BspFNI CGCG 2 cut(s) 84, 105
BspLI GGNNCC 4 cut(s) 91, 217, 418, 454
BspPI GGATC 1 cut(s) 560
BspT107I GGYRCC 2 cut(s) 215, 416
BspTNI GGTCTC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 314
BsrFI RCCGGY 2 cut(s) 99, 419
BssAI RCCGGY 2 cut(s) 99, 419
BssECI CCNNGG 5 cut(s) 82, 287, 358, 444, 585
BssHII GCGCGC 1 cut(s) 103
BssMI GATC 2 cut(s) 252, 552
BssNI GRCGYC 3 cut(s) 216, 375, 417
BssT1I CCWWGG 2 cut(s) 444, 585
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 678
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 3 cut(s) 216, 375, 417
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 3 cut(s) 105, 421, 513
BstDEI CTNAG 3 cut(s) 465, 516, 556
BstDSI CCRYGG 2 cut(s) 82, 444
BstFNI CGCG 2 cut(s) 84, 105
BstH2I RGCGCY 2 cut(s) 219, 420
BstHHI GCGC 4 cut(s) 105, 107, 218, 419
BstKTI GATC 2 cut(s) 255, 555
BstMAI GTCTC 3 cut(s) 366, 385, 488
BstMBI GATC 2 cut(s) 252, 552
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 311, 423, 517
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 3 cut(s) 287, 383, 412
BstUI CGCG 2 cut(s) 84, 105
BstV1I GCAGC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 552
BstYI RGATCY 1 cut(s) 552
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 4 cut(s) 292, 357, 412, 426
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 2 cut(s) 82, 444
BtsIMutI CAGTG 1 cut(s) 674
Cac8I GCNNGC 3 cut(s) 105, 421, 513
CfoI GCGC 4 cut(s) 105, 107, 218, 419
Cfr10I RCCGGY 2 cut(s) 99, 419
Cfr13I GGNCC 3 cut(s) 291, 411, 582
Cfr42I CCGCGG 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 2 cut(s) 383, 643
CviAII CATG 2 cut(s) 247, 445
DdeI CTNAG 3 cut(s) 465, 516, 556
DinI GGCGCC 2 cut(s) 217, 418
DpnI GATC 2 cut(s) 254, 554
DpnII GATC 2 cut(s) 252, 552
EaeI YGGCCR 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 4 cut(s) 119, 223, 265, 292
Ecl136II GAGCTC 2 cut(s) 469, 520
Eco130I CCWWGG 2 cut(s) 444, 585
Eco24I GRGCYC 2 cut(s) 471, 522
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 582
Eco53kI GAGCTC 2 cut(s) 469, 520
Eco57I CTGAAG 1 cut(s) 623
Eco72I CACGTG 1 cut(s) 212
EcoICRI GAGCTC 2 cut(s) 469, 520
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 2 cut(s) 444, 585
EcoT38I GRGCYC 2 cut(s) 471, 522
EgeI GGCGCC 2 cut(s) 217, 418
EheI GGCGCC 2 cut(s) 217, 418
ErhI CCWWGG 2 cut(s) 444, 585
Esp3I CGTCTC 2 cut(s) 366, 385
FaeI CATG 2 cut(s) 250, 448
FaiI YATR 4 cut(s) 248, 435, 446, 606
FaqI GGGAC 2 cut(s) 188, 227
FatI CATG 2 cut(s) 246, 444
FauI CCCGC 2 cut(s) 213, 290
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 7 cut(s) 85, 88, 237, 312, 325, 424, 576
FriOI GRGCYC 2 cut(s) 471, 522
Fsp4HI GCNGC 7 cut(s) 85, 88, 237, 312, 325, 424, 576
GlaI GCGC 4 cut(s) 104, 106, 217, 418
GluI GCNGC 7 cut(s) 85, 88, 237, 312, 325, 424, 576
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 638
HaeII RGCGCY 2 cut(s) 219, 420
HaeIII GGCC 4 cut(s) 292, 357, 412, 426
HapII CCGG 6 cut(s) 68, 100, 369, 384, 414, 420
HgaI GACGC 2 cut(s) 383, 643
HhaI GCGC 4 cut(s) 105, 107, 218, 419
Hin1I GRCGYC 3 cut(s) 216, 375, 417
Hin1II CATG 2 cut(s) 250, 448
Hin6I GCGC 4 cut(s) 103, 105, 216, 417
HinP1I GCGC 4 cut(s) 103, 105, 216, 417
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 6 cut(s) 11, 260, 269, 338, 363, 461
HpaII CCGG 6 cut(s) 68, 100, 369, 384, 414, 420
HphI GGTGA 2 cut(s) 27, 610
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 8 cut(s) 115, 172, 265, 343, 362, 466, 528, 642
Hpy188III TCNNGA 5 cut(s) 369, 476, 487, 503, 705
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 4 cut(s) 149, 269, 338, 356
HpyAV CCTTC 7 cut(s) 136, 177, 199, 382, 466, 589, 619
HpyCH4III ACNGT 1 cut(s) 678
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 608, 631
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 423, 517
HpyF3I CTNAG 3 cut(s) 465, 516, 556
HpySE526I ACGT 1 cut(s) 211
Hsp92I GRCGYC 3 cut(s) 216, 375, 417
Hsp92II CATG 2 cut(s) 250, 448
HspAI GCGC 4 cut(s) 103, 105, 216, 417
KasI GGCGCC 2 cut(s) 215, 416
Kpn2I TCCGGA 1 cut(s) 368
KroI GCCGGC 1 cut(s) 419
KroNI GCCGGC 1 cut(s) 421
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 2 cut(s) 252, 552
LmnI GCTCC 3 cut(s) 95, 302, 458
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 1 cut(s) 54
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 2 cut(s) 670, 678
MalI GATC 2 cut(s) 254, 554
MbiI CCGCTC 1 cut(s) 314
MboI GATC 2 cut(s) 252, 552
MboII GAAGA 2 cut(s) 151, 340
MflI RGATCY 1 cut(s) 552
MhlI GDGCHC 2 cut(s) 471, 522
Mly113I GGCGCC 2 cut(s) 216, 417
MlyI GAGTC 3 cut(s) 254, 263, 332
MmeI TCCRAC 5 cut(s) 39, 138, 195, 288, 366
MreI CGCCGGCG 1 cut(s) 419
MroI TCCGGA 1 cut(s) 368
MroNI GCCGGC 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 6 cut(s) 68, 100, 369, 384, 414, 420
MspR9I CCNGG 3 cut(s) 289, 385, 414
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 2 cut(s) 84, 105
MwoI GCNNNNNNNGC 3 cut(s) 311, 423, 517
NaeI GCCGGC 1 cut(s) 421
NarI GGCGCC 2 cut(s) 216, 417
NciI CCSGG 2 cut(s) 385, 414
NcoI CCATGG 1 cut(s) 444
NdeII GATC 2 cut(s) 252, 552
NgoMIV GCCGGC 1 cut(s) 419
NlaIII CATG 2 cut(s) 250, 448
NlaIV GGNNCC 4 cut(s) 91, 217, 418, 454
NmuCI GTSAC 1 cut(s) 670
PalAI GGCGCGCC 1 cut(s) 103
PauI GCGCGC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 3 cut(s) 168, 261, 456
PdiI GCCGGC 1 cut(s) 421
PfeI GAWTC 3 cut(s) 11, 363, 461
PflFI GACNNNGTC 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 7 cut(s) 86, 89, 238, 313, 326, 425, 577
Ple19I CGATCG 1 cut(s) 255
PleI GAGTC 3 cut(s) 254, 263, 332
PluTI GGCGCC 2 cut(s) 219, 420
PmaCI CACGTG 1 cut(s) 212
PmlI CACGTG 1 cut(s) 212
PpsI GAGTC 3 cut(s) 254, 263, 332
Ppu21I YACGTR 1 cut(s) 212
Psp124BI GAGCTC 2 cut(s) 471, 522
Psp6I CCWGG 1 cut(s) 287
PspCI CACGTG 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 4 cut(s) 91, 217, 418, 454
PspPI GGNCC 3 cut(s) 291, 411, 582
PsuI RGATCY 1 cut(s) 552
PsyI GACNNNGTC 1 cut(s) 377
PteI GCGCGC 1 cut(s) 103
PvuI CGATCG 1 cut(s) 255
SacI GAGCTC 2 cut(s) 471, 522
SacII CCGCGG 1 cut(s) 85
SalI GTCGAC 1 cut(s) 335
SatI GCNGC 7 cut(s) 85, 88, 237, 312, 325, 424, 576
Sau3AI GATC 2 cut(s) 252, 552
Sau96I GGNCC 3 cut(s) 291, 411, 582
SchI GAGTC 3 cut(s) 254, 263, 332
ScrFI CCNGG 3 cut(s) 289, 385, 414
SduI GDGCHC 2 cut(s) 471, 522
SfaNI GCATC 1 cut(s) 54
SfoI GGCGCC 2 cut(s) 217, 418
Sfr303I CCGCGG 1 cut(s) 85
SgrAI CRCCGGYG 2 cut(s) 99, 419
SgrBI CCGCGG 1 cut(s) 85
SgsI GGCGCGCC 1 cut(s) 103
SinI GGWCC 1 cut(s) 582
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SspDI GGCGCC 2 cut(s) 215, 416
SstI GAGCTC 2 cut(s) 471, 522
StyD4I CCNGG 3 cut(s) 287, 383, 412
StyI CCWWGG 2 cut(s) 444, 585
TaaI ACNGT 1 cut(s) 678
TaiI ACGT 1 cut(s) 214
TaqI TCGA 8 cut(s) 144, 162, 177, 255, 336, 351, 459, 477
TauI GCSGC 6 cut(s) 87, 90, 239, 314, 426, 578
TfiI GAWTC 3 cut(s) 11, 363, 461
TscAI CASTG 1 cut(s) 681
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 1 cut(s) 324
Tsp45I GTSAC 1 cut(s) 670
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 1 cut(s) 681
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 582
XmiI GTMKAC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.