Rmu_sc0002030.1_g000004
BZIP Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002030.1
Physical Location & Seq
Reverse (-)
14411 .. 18026
3616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002030.1_g000004.1.cds

Sequence Viewer

Length: 1050 bp
atggattccaacagcaacaacaacagccacagcttcacctcacccacctcctcaaccgacattgagcagatgccggagaccccccaccgcggtgggtcctaccaccgccgcgcccactccgacttctcctccttccgcctccccaacttcgacgacctcctcctcttcgacccttccgacctcgacctctcctccttcccctccccctctcccgtccccccgccacgtggcacctccaactccaactccaactccgccgccgcagccgtccccatgccgatcgactccgacgattcctccgcctcccgccccaggcccagctcctcctccggccccagcgccgcggccgcgcatttccgcagcctctccgtcgactccgacttcttcgacggcctcgcgctcgccggagacgccggcgggaaggaggtcgttgggggtaagagggccggcggcggccaccacaggcacagcaactccatggacggctcctttgattctgagctctctctcgatgggctcaagaagtccataactcctgataagctggctgagctctctctgattgaccctaagagagctaaaaggatcttagctaatagacaatccgctgcgaggtccaaggagaggaaggtgagatatgcaaatgagctggagaggaaggtgcagacgcttcagacagaggcaaccaccctatcggcacaggtcacactgttacagagagacactactgcaataactgctgaaaataaggagctcaaaattcggctacagtctatggagcaacaagcacagctgagagatgccttgaatgaaaaattaaaggaggaagtggagcggcttaagattgaaaccagccaaatcccccatgggagtggaaaccctttctacagagggctcccccctcaatatgtgccgccccagtctgccttgcataatcagctgggtggtagccagagccagcaccagcaccagcagcttcacatgcttcacaaccagaacgtcaacgggcagcctcacccgagtttcatggacttcaaccagagggcgtag

Protein Analysis

349

Amino Acids

38.13

Weight (kDa)

6.74

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccBSI CCGCTC 1 cut(s) 835
AccI GTMKAC 1 cut(s) 372
AccII CGCG 5 cut(s) 90, 111, 344, 350, 398
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 2 cut(s) 345, 454
AcsI RAATTY 1 cut(s) 759
AcuI CTGAAG 1 cut(s) 656
AcvI CACGTG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 411
AfiI CCNNNNNNNGG 5 cut(s) 89, 227, 312, 612, 624
AflII CTTAAG 1 cut(s) 839
AgsI TTSAA 3 cut(s) 808, 848, 1036
AjnI CCWGG 1 cut(s) 311
AleI CACNNNNGTG 1 cut(s) 90
Alw21I GWGCWC 3 cut(s) 504, 555, 756
Alw26I GTCTC 3 cut(s) 71, 402, 714
AlwI GGATC 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 1018
AoxI GGCC 6 cut(s) 314, 331, 345, 391, 444, 454
ApeKI GCWGC 5 cut(s) 263, 360, 608, 973, 1009
ApoI RAATTY 1 cut(s) 759
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AspLEI GCGC 4 cut(s) 113, 341, 352, 400
AspS9I GGNCC 5 cut(s) 96, 315, 332, 444, 615
AsuHPI GGTGA 4 cut(s) 28, 33, 643, 1007
AvaI CYCGRG 1 cut(s) 1018
AvaII GGWCC 2 cut(s) 96, 615
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 5 cut(s) 504, 519, 555, 756, 897
BbrPI CACGTG 1 cut(s) 227
Bbv12I GWGCWC 3 cut(s) 504, 555, 756
BbvI GCAGC 5 cut(s) 275, 372, 595, 985, 1021
BccI CCATC 1 cut(s) 506
BceAI ACGGC 3 cut(s) 251, 406, 499
BciT130I CCWGG 1 cut(s) 313
BcoDI GTCTC 3 cut(s) 71, 402, 714
BfmI CTRYAG 2 cut(s) 767, 886
BfoI RGCGCY 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 839
BlpI GCTNAGC 1 cut(s) 549
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 96, 615
BmeT110I CYCGRG 1 cut(s) 1018
BmgT120I GGNCC 5 cut(s) 96, 315, 332, 444, 615
BmiI GGNNCC 5 cut(s) 97, 232, 334, 487, 896
BmrFI CCNGG 1 cut(s) 313
BmrI ACTGGG 1 cut(s) 913
BmsI GCATC 2 cut(s) 60, 790
BmuI ACTGGG 1 cut(s) 913
BpmI CTGGAG 1 cut(s) 671
Bpu1102I GCTNAGC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 503
BsaAI YACGTR 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 6 cut(s) 88, 311, 342, 477, 618, 865
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 227, 312, 612, 624
Bse118I RCCGGY 2 cut(s) 413, 446
Bse1I ACTGG 1 cut(s) 919
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 6 cut(s) 88, 311, 342, 477, 618, 865
BseLI CCNNNNNNNGG 5 cut(s) 89, 227, 312, 612, 624
BseMII CTCAG 3 cut(s) 489, 540, 785
BseNI ACTGG 1 cut(s) 919
BseRI GAGGAG 7 cut(s) 40, 118, 149, 152, 181, 313, 316
BseX3I CGGCCG 1 cut(s) 345
BseXI GCAGC 5 cut(s) 275, 372, 595, 985, 1021
BseYI CCCAGC 3 cut(s) 317, 335, 940
BsgI GTGCAG 1 cut(s) 683
Bsh1236I CGCG 5 cut(s) 90, 111, 344, 350, 398
Bsh1285I CGRYCG 2 cut(s) 282, 348
BshFI GGCC 6 cut(s) 316, 333, 347, 393, 446, 456
BshNI GGYRCC 1 cut(s) 230
BsiEI CGRYCG 2 cut(s) 282, 348
BsiHKAI GWGCWC 3 cut(s) 504, 555, 756
BsiHKCI CYCGRG 1 cut(s) 1018
BsiSI CCGG 5 cut(s) 74, 330, 405, 414, 447
BslFI GGGAC 2 cut(s) 200, 254
BslI CCNNNNNNNGG 5 cut(s) 89, 227, 312, 612, 624
BsmAI GTCTC 3 cut(s) 71, 402, 714
BsmBI CGTCTC 1 cut(s) 402
BsmFI GGGAC 2 cut(s) 200, 254
BsnI GGCC 6 cut(s) 316, 333, 347, 393, 446, 456
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 1018
Bsp1286I GDGCHC 5 cut(s) 504, 519, 555, 756, 897
Bsp143I GATC 2 cut(s) 279, 585
Bsp1720I GCTNAGC 1 cut(s) 549
Bsp19I CCATGG 2 cut(s) 477, 865
BspANI GGCC 6 cut(s) 316, 333, 347, 393, 446, 456
BspCNI CTCAG 3 cut(s) 490, 541, 786
BspFNI CGCG 5 cut(s) 90, 111, 344, 350, 398
BspLI GGNNCC 5 cut(s) 97, 232, 334, 487, 896
BspPI GGATC 1 cut(s) 593
BspT107I GGYRCC 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 839
BspTNI GGTCTC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 835
BsrFI RCCGGY 2 cut(s) 413, 446
BsrI ACTGG 1 cut(s) 919
BssAI RCCGGY 2 cut(s) 413, 446
BssECI CCNNGG 6 cut(s) 88, 311, 342, 477, 618, 865
BssMI GATC 2 cut(s) 279, 585
BssNI GRCGYC 1 cut(s) 411
BssT1I CCWWGG 3 cut(s) 477, 618, 865
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 2 cut(s) 711, 771
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 411
BstAFI CTTAAG 1 cut(s) 839
BstAPI GCANNNNNTGC 1 cut(s) 737
BstBAI YACGTR 1 cut(s) 227
BstC8I GCNNGC 5 cut(s) 402, 415, 448, 546, 959
BstDEI CTNAG 5 cut(s) 498, 549, 570, 589, 794
BstDSI CCRYGG 4 cut(s) 88, 342, 477, 865
BstFNI CGCG 5 cut(s) 90, 111, 344, 350, 398
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 4 cut(s) 113, 341, 352, 400
BstKTI GATC 2 cut(s) 282, 588
BstMAI GTCTC 3 cut(s) 71, 402, 714
BstMBI GATC 2 cut(s) 279, 585
BstMCI CGRYCG 2 cut(s) 282, 348
BstMWI GCNNNNNNNGC 8 cut(s) 263, 347, 410, 550, 737, 937, 973, 982
BstNI CCWGG 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 985
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 2 cut(s) 767, 886
BstUI CGCG 5 cut(s) 90, 111, 344, 350, 398
BstV1I GCAGC 5 cut(s) 275, 372, 595, 985, 1021
BstX2I RGATCY 1 cut(s) 585
BstXI CCANNNNNNTGG 2 cut(s) 92, 872
BstYI RGATCY 1 cut(s) 585
BstZI CGGCCG 1 cut(s) 345
BsuRI GGCC 6 cut(s) 316, 333, 347, 393, 446, 456
BtgI CCRYGG 4 cut(s) 88, 342, 477, 865
BtsIMutI CAGTG 1 cut(s) 707
Cac8I GCNNGC 5 cut(s) 402, 415, 448, 546, 959
CciNI GCGGCCGC 1 cut(s) 345
CfoI GCGC 4 cut(s) 113, 341, 352, 400
Cfr10I RCCGGY 2 cut(s) 413, 446
Cfr13I GGNCC 5 cut(s) 96, 315, 332, 444, 615
Cfr42I CCGCGG 2 cut(s) 91, 345
CseI GACGC 2 cut(s) 419, 676
CviAII CATG 5 cut(s) 274, 478, 866, 982, 1027
DdeI CTNAG 5 cut(s) 498, 549, 570, 589, 794
DpnI GATC 2 cut(s) 281, 587
DpnII GATC 2 cut(s) 279, 585
EaeI YGGCCR 2 cut(s) 345, 454
EagI CGGCCG 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 3 cut(s) 125, 244, 289
Ecl136II GAGCTC 3 cut(s) 502, 553, 754
EclXI CGGCCG 1 cut(s) 345
Eco130I CCWWGG 3 cut(s) 477, 618, 865
Eco24I GRGCYC 5 cut(s) 504, 519, 555, 756, 897
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 96, 615
Eco52I CGGCCG 1 cut(s) 345
Eco53kI GAGCTC 3 cut(s) 502, 553, 754
Eco57I CTGAAG 1 cut(s) 656
Eco72I CACGTG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 1018
EcoICRI GAGCTC 3 cut(s) 502, 553, 754
EcoO109I RGGNCCY 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 3 cut(s) 477, 618, 865
EcoT38I GRGCYC 5 cut(s) 504, 519, 555, 756, 897
ErhI CCWWGG 3 cut(s) 477, 618, 865
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 5 cut(s) 277, 481, 869, 985, 1030
FaqI GGGAC 2 cut(s) 200, 254
FatI CATG 5 cut(s) 273, 477, 865, 981, 1026
FauI CCCGC 3 cut(s) 228, 314, 410
FblI GTMKAC 1 cut(s) 372
FriOI GRGCYC 5 cut(s) 504, 519, 555, 756, 897
GlaI GCGC 4 cut(s) 112, 340, 351, 399
GsaI CCCAGC 3 cut(s) 321, 339, 944
GsuI CTGGAG 1 cut(s) 671
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 6 cut(s) 316, 333, 347, 393, 446, 456
HapII CCGG 5 cut(s) 74, 330, 405, 414, 447
HgaI GACGC 2 cut(s) 419, 676
HhaI GCGC 4 cut(s) 113, 341, 352, 400
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 5 cut(s) 277, 481, 869, 985, 1030
Hin6I GCGC 4 cut(s) 111, 339, 350, 398
HinP1I GCGC 4 cut(s) 111, 339, 350, 398
HincII GTYRAC 2 cut(s) 373, 1003
HindII GTYRAC 2 cut(s) 373, 1003
HinfI GANTC 5 cut(s) 5, 284, 293, 374, 494
HpaII CCGG 5 cut(s) 74, 330, 405, 414, 447
HphI GGTGA 4 cut(s) 28, 33, 643, 1007
Hpy166II GTNNAC 2 cut(s) 373, 1003
Hpy188I TCNGA 7 cut(s) 121, 178, 289, 379, 499, 561, 675
Hpy188III TCNNGA 3 cut(s) 509, 520, 536
Hpy8I GTNNAC 2 cut(s) 373, 1003
Hpy99I CGWCG 4 cut(s) 155, 293, 374, 392
HpyAV CCTTC 6 cut(s) 142, 183, 205, 415, 622, 652
HpyCH4III ACNGT 2 cut(s) 711, 771
HpyCH4IV ACGT 2 cut(s) 226, 999
HpyCH4V TGCA 4 cut(s) 641, 664, 731, 931
HpyF10VI GCNNNNNNNGC 8 cut(s) 263, 347, 410, 550, 737, 937, 973, 982
HpyF3I CTNAG 5 cut(s) 498, 549, 570, 589, 794
HpySE526I ACGT 2 cut(s) 226, 999
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 5 cut(s) 277, 481, 869, 985, 1030
HspAI GCGC 4 cut(s) 111, 339, 350, 398
KroI GCCGGC 2 cut(s) 413, 446
KroNI GCCGGC 2 cut(s) 415, 448
KspI CCGCGG 2 cut(s) 91, 345
Kzo9I GATC 2 cut(s) 279, 585
LmnI GCTCC 6 cut(s) 326, 491, 751, 778, 832, 900
Lsp1109I GCAGC 5 cut(s) 275, 372, 595, 985, 1021
LweI GCATC 2 cut(s) 60, 790
MaeII ACGT 2 cut(s) 226, 999
MaeIII GTNAC 2 cut(s) 703, 711
MalI GATC 2 cut(s) 281, 587
MbiI CCGCTC 1 cut(s) 835
MboI GATC 2 cut(s) 279, 585
MboII GAAGA 2 cut(s) 157, 376
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 5 cut(s) 504, 519, 555, 756, 897
MluCI AATT 2 cut(s) 759, 815
MlyI GAGTC 2 cut(s) 278, 368
MmeI TCCRAC 8 cut(s) 33, 144, 201, 261, 267, 273, 312, 402
MreI CGCCGGCG 1 cut(s) 413
MroNI GCCGGC 2 cut(s) 413, 446
MseI TTAA 2 cut(s) 818, 840
MslI CAYNNNNRTG 2 cut(s) 90, 870
MspA1I CMGCKG 5 cut(s) 90, 344, 608, 793, 940
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 5 cut(s) 74, 330, 405, 414, 447
MspR9I CCNGG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 313
MvnI CGCG 5 cut(s) 90, 111, 344, 350, 398
MwoI GCNNNNNNNGC 8 cut(s) 263, 347, 410, 550, 737, 937, 973, 982
NaeI GCCGGC 2 cut(s) 415, 448
NcoI CCATGG 2 cut(s) 477, 865
NdeII GATC 2 cut(s) 279, 585
NgoMIV GCCGGC 2 cut(s) 413, 446
NlaIII CATG 5 cut(s) 277, 481, 869, 985, 1030
NlaIV GGNNCC 5 cut(s) 97, 232, 334, 487, 896
NmuCI GTSAC 1 cut(s) 703
NotI GCGGCCGC 1 cut(s) 345
NspI RCATGY 1 cut(s) 985
OliI CACNNNNGTG 1 cut(s) 90
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 288
PdiI GCCGGC 2 cut(s) 415, 448
PfeI GAWTC 3 cut(s) 5, 293, 494
Ple19I CGATCG 1 cut(s) 282
PleI GAGTC 2 cut(s) 278, 368
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 2 cut(s) 278, 368
Ppu21I YACGTR 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 96
Psp124BI GAGCTC 3 cut(s) 504, 555, 756
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 311
PspCI CACGTG 1 cut(s) 227
PspFI CCCAGC 3 cut(s) 317, 335, 940
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 5 cut(s) 97, 232, 334, 487, 896
PspPI GGNCC 5 cut(s) 96, 315, 332, 444, 615
PspPPI RGGWCCY 1 cut(s) 96
PsuI RGATCY 1 cut(s) 585
PvuI CGATCG 1 cut(s) 282
PvuII CAGCTG 2 cut(s) 793, 940
RseI CAYNNNNRTG 2 cut(s) 90, 870
SacI GAGCTC 3 cut(s) 504, 555, 756
SacII CCGCGG 2 cut(s) 91, 345
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 2 cut(s) 818, 840
Sau3AI GATC 2 cut(s) 279, 585
Sau96I GGNCC 5 cut(s) 96, 315, 332, 444, 615
SchI GAGTC 2 cut(s) 278, 368
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 5 cut(s) 504, 519, 555, 756, 897
SfaNI GCATC 2 cut(s) 60, 790
SfcI CTRYAG 2 cut(s) 767, 886
Sfr303I CCGCGG 2 cut(s) 91, 345
SgrAI CRCCGGYG 1 cut(s) 413
SgrBI CCGCGG 2 cut(s) 91, 345
SinI GGWCC 2 cut(s) 96, 615
SmiMI CAYNNNNRTG 2 cut(s) 90, 870
SmlI CTYRAG 2 cut(s) 518, 839
SmoI CTYRAG 2 cut(s) 518, 839
Sse9I AATT 2 cut(s) 759, 815
SstI GAGCTC 3 cut(s) 504, 555, 756
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 3 cut(s) 477, 618, 865
TaaI ACNGT 2 cut(s) 711, 771
TaiI ACGT 2 cut(s) 229, 1002
TaqI TCGA 7 cut(s) 150, 168, 183, 282, 372, 387, 510
TasI AATT 2 cut(s) 759, 815
TfiI GAWTC 3 cut(s) 5, 293, 494
Tru1I TTAA 2 cut(s) 818, 840
Tru9I TTAA 2 cut(s) 818, 840
TscAI CASTG 1 cut(s) 714
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 5 cut(s) 263, 360, 608, 973, 1009
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 2 cut(s) 825, 1015
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 1 cut(s) 714
Vha464I CTTAAG 1 cut(s) 839
VpaK11BI GGWCC 2 cut(s) 96, 615
XapI RAATTY 1 cut(s) 759
XceI RCATGY 1 cut(s) 985
XcmI CCANNNNNNNNNTGG 1 cut(s) 863
XmiI GTMKAC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.