Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G43700 |
| fragaria_vesca | FvH4_2g14020 FvH4_2g14020 |
| malus_domestica | MD05G1022300.v1.1 MD10G1023800.v1.1 |
| prunus_persica | Prupe.8G026300_v2.0.a1 |
| pyrus_communis | pycom05g01310 pycom10g01570 |
| rosa_chinensis | RchiOBHm_Chr6g0275921 |
| rosa_laevigata | RLG00000013423 |
| rosa_multiflora | Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004 |
| rosa_roxburghii | Rroxscaffold_7G00192770 |
| rosa_rugosa | Rorug06G0097400 Rorug06G0097500 Rorug06G0097600 |
| rosa_samantha | Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400 |
| rosa_wichuraiana | Rw6G018220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 959 |
| AccBSI | CCGCTC | 1 cut(s) | 654 |
| AccI | GTMKAC | 1 cut(s) | 869 |
| AccII | CGCG | 1 cut(s) | 321 |
| AccIII | TCCGGA | 1 cut(s) | 585 |
| AcoI | YGGCCR | 2 cut(s) | 163, 567 |
| AcuI | CTGAAG | 1 cut(s) | 887 |
| AcvI | CACGTG | 1 cut(s) | 446 |
| AflII | CTTAAG | 2 cut(s) | 1049, 1070 |
| AgsI | TTSAA | 5 cut(s) | 148, 751, 1039, 1079, 1252 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 706 |
| AjnI | CCWGG | 3 cut(s) | 57, 621, 627 |
| AluBI | AGCT | 9 cut(s) | 46, 52, 693, 784, 824, 880, 985, 1024, 1239 |
| AluI | AGCT | 9 cut(s) | 46, 52, 693, 784, 824, 880, 985, 1024, 1239 |
| Alw21I | GWGCWC | 2 cut(s) | 786, 987 |
| Alw26I | GTCTC | 3 cut(s) | 302, 766, 945 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 46, 1006 |
| Ama87I | CYCGRG | 2 cut(s) | 1097, 1234 |
| Aor13HI | TCCGGA | 1 cut(s) | 585 |
| AoxI | GGCC | 7 cut(s) | 3, 163, 339, 508, 567, 619, 625 |
| ApaI | GGGCCC | 1 cut(s) | 343 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 746 |
| AspLEI | GCGC | 2 cut(s) | 257, 321 |
| AspS9I | GGNCC | 9 cut(s) | 4, 61, 209, 324, 339, 340, 508, 625, 672 |
| AsuC2I | CCSGG | 3 cut(s) | 338, 1098, 1099 |
| AsuHPI | GGTGA | 4 cut(s) | 742, 874, 1207, 1223 |
| AvaI | CYCGRG | 2 cut(s) | 1097, 1234 |
| AvaII | GGWCC | 4 cut(s) | 61, 209, 324, 672 |
| BaeGI | GKGCMC | 1 cut(s) | 343 |
| BanII | GRGCYC | 3 cut(s) | 343, 786, 987 |
| BbrPI | CACGTG | 1 cut(s) | 446 |
| Bbv12I | GWGCWC | 2 cut(s) | 786, 987 |
| BbvCI | CCTCAGC | 1 cut(s) | 315 |
| BccI | CCATC | 1 cut(s) | 691 |
| BceAI | ACGGC | 4 cut(s) | 582, 634, 718, 760 |
| BciT130I | CCWGG | 3 cut(s) | 59, 623, 629 |
| BcnI | CCSGG | 3 cut(s) | 338, 1098, 1099 |
| BcoDI | GTCTC | 3 cut(s) | 302, 766, 945 |
| BfmI | CTRYAG | 2 cut(s) | 47, 998 |
| BfoI | RGCGCY | 1 cut(s) | 258 |
| BfrI | CTTAAG | 2 cut(s) | 1049, 1070 |
| BlpI | GCTNAGC | 1 cut(s) | 780 |
| Bme1390I | CCNGG | 6 cut(s) | 59, 338, 623, 629, 1098, 1099 |
| Bme18I | GGWCC | 4 cut(s) | 61, 209, 324, 672 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 706 |
| BmeT110I | CYCGRG | 2 cut(s) | 1097, 1234 |
| BmgT120I | GGNCC | 9 cut(s) | 4, 61, 209, 324, 339, 340, 508, 625, 672 |
| BmiI | GGNNCC | 8 cut(s) | 6, 325, 326, 341, 562, 590, 673, 674 |
| BmrFI | CCNGG | 6 cut(s) | 59, 338, 623, 629, 1098, 1099 |
| BmsI | GCATC | 4 cut(s) | 372, 706, 1021, 1207 |
| BpmI | CTGGAG | 3 cut(s) | 41, 902, 1028 |
| Bpu10I | CCTNAGC | 1 cut(s) | 315 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 780 |
| BpuMI | CCSGG | 3 cut(s) | 338, 1098, 1099 |
| BsaAI | YACGTR | 1 cut(s) | 446 |
| BsaI | GGTCTC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 7 cut(s) | 501, 564, 622, 628, 1097, 1098, 1126 |
| BsaWI | WCCGGW | 1 cut(s) | 585 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 143, 173, 287, 317, 512, 542 |
| BseAI | TCCGGA | 1 cut(s) | 585 |
| BseBI | CCWGG | 3 cut(s) | 59, 623, 629 |
| BseDI | CCNNGG | 7 cut(s) | 501, 564, 622, 628, 1097, 1098, 1126 |
| BseGI | GGATG | 2 cut(s) | 363, 471 |
| BseMII | CTCAG | 6 cut(s) | 53, 329, 759, 771, 939, 963 |
| BseRI | GAGGAG | 5 cut(s) | 124, 374, 377, 490, 520 |
| BseSI | GKGCMC | 1 cut(s) | 343 |
| BseYI | CCCAGC | 2 cut(s) | 1103, 1155 |
| BsgI | GTGCAG | 2 cut(s) | 914, 1082 |
| Bsh1236I | CGCG | 1 cut(s) | 321 |
| BshFI | GGCC | 7 cut(s) | 5, 165, 341, 510, 569, 621, 627 |
| BsiHKAI | GWGCWC | 2 cut(s) | 786, 987 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1097, 1234 |
| BsiSI | CCGG | 6 cut(s) | 162, 337, 558, 586, 639, 1098 |
| BslFI | GGGAC | 4 cut(s) | 256, 310, 466, 658 |
| BsmAI | GTCTC | 3 cut(s) | 302, 766, 945 |
| BsmFI | GGGAC | 4 cut(s) | 256, 310, 466, 658 |
| BsnI | GGCC | 7 cut(s) | 5, 165, 341, 510, 569, 621, 627 |
| Bso31I | GGTCTC | 1 cut(s) | 302 |
| BsoBI | CYCGRG | 2 cut(s) | 1097, 1234 |
| Bsp120I | GGGCCC | 1 cut(s) | 339 |
| Bsp1286I | GDGCHC | 3 cut(s) | 343, 786, 987 |
| Bsp13I | TCCGGA | 1 cut(s) | 585 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 780 |
| BspANI | GGCC | 7 cut(s) | 5, 165, 341, 510, 569, 621, 627 |
| BspCNI | CTCAG | 6 cut(s) | 52, 328, 760, 772, 938, 964 |
| BspEI | TCCGGA | 1 cut(s) | 585 |
| BspFNI | CGCG | 1 cut(s) | 321 |
| BspLI | GGNNCC | 8 cut(s) | 6, 325, 326, 341, 562, 590, 673, 674 |
| BspMAI | CTGCAG | 1 cut(s) | 51 |
| BspTI | CTTAAG | 2 cut(s) | 1049, 1070 |
| BspTNI | GGTCTC | 1 cut(s) | 302 |
| BsrBI | CCGCTC | 1 cut(s) | 654 |
| BssECI | CCNNGG | 7 cut(s) | 501, 564, 622, 628, 1097, 1098, 1126 |
| BssNAI | GTATAC | 1 cut(s) | 870 |
| Bst1107I | GTATAC | 1 cut(s) | 870 |
| Bst2UI | CCWGG | 3 cut(s) | 59, 623, 629 |
| Bst4CI | ACNGT | 2 cut(s) | 270, 961 |
| Bst6I | CTCTTC | 1 cut(s) | 395 |
| BstAFI | CTTAAG | 2 cut(s) | 1049, 1070 |
| BstBAI | YACGTR | 1 cut(s) | 446 |
| BstC8I | GCNNGC | 2 cut(s) | 546, 1227 |
| BstDEI | CTNAG | 8 cut(s) | 39, 315, 768, 780, 801, 925, 972, 1025 |
| BstDSI | CCRYGG | 1 cut(s) | 564 |
| BstF5I | GGATG | 2 cut(s) | 363, 471 |
| BstFNI | CGCG | 1 cut(s) | 321 |
| BstH2I | RGCGCY | 1 cut(s) | 258 |
| BstHHI | GCGC | 2 cut(s) | 257, 321 |
| BstMAI | GTCTC | 3 cut(s) | 302, 766, 945 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 49, 456, 459, 575, 1186, 1195 |
| BstNI | CCWGG | 3 cut(s) | 59, 623, 629 |
| BstSCI | CCNGG | 6 cut(s) | 57, 336, 621, 627, 1096, 1097 |
| BstSFI | CTRYAG | 2 cut(s) | 47, 998 |
| BstSLI | GKGCMC | 1 cut(s) | 343 |
| BstUI | CGCG | 1 cut(s) | 321 |
| BstZ17I | GTATAC | 1 cut(s) | 870 |
| BsuRI | GGCC | 7 cut(s) | 5, 165, 341, 510, 569, 621, 627 |
| BtgI | CCRYGG | 1 cut(s) | 564 |
| BtsCI | GGATG | 2 cut(s) | 363, 471 |
| Cac8I | GCNNGC | 2 cut(s) | 546, 1227 |
| CaiI | CAGNNNCTG | 2 cut(s) | 46, 1006 |
| CfoI | GCGC | 2 cut(s) | 257, 321 |
| Cfr13I | GGNCC | 9 cut(s) | 4, 61, 209, 324, 339, 340, 508, 625, 672 |
| Cfr9I | CCCGGG | 1 cut(s) | 1097 |
| CseI | GACGC | 2 cut(s) | 745, 907 |
| CviAII | CATG | 2 cut(s) | 292, 478 |
| DdeI | CTNAG | 8 cut(s) | 39, 315, 768, 780, 801, 925, 972, 1025 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 959 |
| DriI | GACNNNNNGTC | 1 cut(s) | 706 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 959 |
| EaeI | YGGCCR | 2 cut(s) | 163, 567 |
| Eam1104I | CTCTTC | 1 cut(s) | 395 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 706 |
| EarI | CTCTTC | 1 cut(s) | 395 |
| EciI | GGCGGA | 1 cut(s) | 165 |
| Ecl136II | GAGCTC | 2 cut(s) | 784, 985 |
| Eco24I | GRGCYC | 3 cut(s) | 343, 786, 987 |
| Eco31I | GGTCTC | 1 cut(s) | 302 |
| Eco47I | GGWCC | 4 cut(s) | 61, 209, 324, 672 |
| Eco53kI | GAGCTC | 2 cut(s) | 784, 985 |
| Eco57I | CTGAAG | 1 cut(s) | 887 |
| Eco72I | CACGTG | 1 cut(s) | 446 |
| Eco88I | CYCGRG | 2 cut(s) | 1097, 1234 |
| EcoICRI | GAGCTC | 2 cut(s) | 784, 985 |
| EcoO109I | RGGNCCY | 2 cut(s) | 324, 672 |
| EcoRII | CCWGG | 3 cut(s) | 57, 621, 627 |
| EcoT38I | GRGCYC | 3 cut(s) | 343, 786, 987 |
| FaeI | CATG | 2 cut(s) | 295, 481 |
| FaiI | YATR | 7 cut(s) | 293, 479, 870, 965, 1146, 1244, 1264 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1008, 1040 |
| FaqI | GGGAC | 4 cut(s) | 256, 310, 466, 658 |
| FatI | CATG | 2 cut(s) | 291, 477 |
| FauI | CCCGC | 2 cut(s) | 314, 647 |
| FblI | GTMKAC | 1 cut(s) | 869 |
| FokI | GGATG | 2 cut(s) | 350, 458 |
| FriOI | GRGCYC | 3 cut(s) | 343, 786, 987 |
| GlaI | GCGC | 2 cut(s) | 256, 320 |
| GsaI | CCCAGC | 2 cut(s) | 1107, 1159 |
| GsuI | CTGGAG | 3 cut(s) | 41, 902, 1028 |
| HaeII | RGCGCY | 1 cut(s) | 258 |
| HaeIII | GGCC | 7 cut(s) | 5, 165, 341, 510, 569, 621, 627 |
| HapII | CCGG | 6 cut(s) | 162, 337, 558, 586, 639, 1098 |
| HgaI | GACGC | 2 cut(s) | 745, 907 |
| HhaI | GCGC | 2 cut(s) | 257, 321 |
| Hin1II | CATG | 2 cut(s) | 295, 481 |
| Hin6I | GCGC | 2 cut(s) | 255, 319 |
| HinP1I | GCGC | 2 cut(s) | 255, 319 |
| HinfI | GANTC | 6 cut(s) | 230, 488, 497, 602, 635, 722 |
| HpaII | CCGG | 6 cut(s) | 162, 337, 558, 586, 639, 1098 |
| HphI | GGTGA | 4 cut(s) | 742, 874, 1207, 1223 |
| Hpy166II | GTNNAC | 2 cut(s) | 64, 870 |
| Hpy188I | TCNGA | 9 cut(s) | 307, 349, 403, 493, 505, 607, 792, 906, 1152 |
| Hpy188III | TCNNGA | 5 cut(s) | 264, 586, 751, 767, 1007 |
| Hpy8I | GTNNAC | 2 cut(s) | 64, 870 |
| Hpy99I | CGWCG | 5 cut(s) | 380, 497, 602, 620, 730 |
| HpyAV | CCTTC | 8 cut(s) | 20, 132, 139, 367, 408, 535, 853, 883 |
| HpyCH4III | ACNGT | 2 cut(s) | 270, 961 |
| HpyCH4IV | ACGT | 1 cut(s) | 445 |
| HpyCH4V | TGCA | 3 cut(s) | 49, 895, 1063 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 49, 456, 459, 575, 1186, 1195 |
| HpyF3I | CTNAG | 8 cut(s) | 39, 315, 768, 780, 801, 925, 972, 1025 |
| HpySE526I | ACGT | 1 cut(s) | 445 |
| Hsp92II | CATG | 2 cut(s) | 295, 481 |
| HspAI | GCGC | 2 cut(s) | 255, 319 |
| KflI | GGGWCCC | 2 cut(s) | 324, 672 |
| Kpn2I | TCCGGA | 1 cut(s) | 585 |
| LmnI | GCTCC | 6 cut(s) | 295, 566, 588, 769, 982, 1009 |
| LweI | GCATC | 4 cut(s) | 372, 706, 1021, 1207 |
| MaeII | ACGT | 1 cut(s) | 445 |
| MaeIII | GTNAC | 3 cut(s) | 934, 942, 1213 |
| MbiI | CCGCTC | 1 cut(s) | 654 |
| MboII | GAAGA | 2 cut(s) | 382, 604 |
| MhlI | GDGCHC | 3 cut(s) | 343, 786, 987 |
| MlyI | GAGTC | 3 cut(s) | 482, 491, 716 |
| MmeI | TCCRAC | 6 cut(s) | 258, 285, 372, 426, 516, 630 |
| MroI | TCCGGA | 1 cut(s) | 585 |
| MroXI | GAANNNNTTC | 1 cut(s) | 746 |
| MseI | TTAA | 3 cut(s) | 156, 1050, 1071 |
| MslI | CAYNNNNRTG | 1 cut(s) | 476 |
| MspA1I | CMGCKG | 3 cut(s) | 46, 575, 1066 |
| MspCI | CTTAAG | 2 cut(s) | 1049, 1070 |
| MspI | CCGG | 6 cut(s) | 162, 337, 558, 586, 639, 1098 |
| MspR9I | CCNGG | 6 cut(s) | 59, 338, 623, 629, 1098, 1099 |
| MvaI | CCWGG | 3 cut(s) | 59, 623, 629 |
| MvnI | CGCG | 1 cut(s) | 321 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 49, 456, 459, 575, 1186, 1195 |
| NciI | CCSGG | 3 cut(s) | 338, 1098, 1099 |
| NlaIII | CATG | 2 cut(s) | 295, 481 |
| NlaIV | GGNNCC | 8 cut(s) | 6, 325, 326, 341, 562, 590, 673, 674 |
| NmuCI | GTSAC | 2 cut(s) | 934, 1213 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 399, 492 |
| PdmI | GAANNNNTTC | 1 cut(s) | 746 |
| PfeI | GAWTC | 3 cut(s) | 230, 602, 635 |
| PleI | GAGTC | 3 cut(s) | 482, 491, 716 |
| PmaCI | CACGTG | 1 cut(s) | 446 |
| PmlI | CACGTG | 1 cut(s) | 446 |
| PpsI | GAGTC | 3 cut(s) | 482, 491, 716 |
| Ppu21I | YACGTR | 1 cut(s) | 446 |
| PpuMI | RGGWCCY | 2 cut(s) | 324, 672 |
| Psp124BI | GAGCTC | 2 cut(s) | 786, 987 |
| Psp5II | RGGWCCY | 2 cut(s) | 324, 672 |
| Psp6I | CCWGG | 3 cut(s) | 57, 621, 627 |
| PspCI | CACGTG | 1 cut(s) | 446 |
| PspFI | CCCAGC | 2 cut(s) | 1103, 1155 |
| PspGI | CCWGG | 3 cut(s) | 57, 621, 627 |
| PspN4I | GGNNCC | 8 cut(s) | 6, 325, 326, 341, 562, 590, 673, 674 |
| PspOMI | GGGCCC | 1 cut(s) | 339 |
| PspPI | GGNCC | 9 cut(s) | 4, 61, 209, 324, 339, 340, 508, 625, 672 |
| PspPPI | RGGWCCY | 2 cut(s) | 324, 672 |
| PstI | CTGCAG | 1 cut(s) | 51 |
| PstNI | CAGNNNCTG | 2 cut(s) | 46, 1006 |
| PvuII | CAGCTG | 1 cut(s) | 46 |
| RseI | CAYNNNNRTG | 1 cut(s) | 476 |
| SacI | GAGCTC | 2 cut(s) | 786, 987 |
| SaqAI | TTAA | 3 cut(s) | 156, 1050, 1071 |
| Sau96I | GGNCC | 9 cut(s) | 4, 61, 209, 324, 339, 340, 508, 625, 672 |
| SchI | GAGTC | 3 cut(s) | 482, 491, 716 |
| ScrFI | CCNGG | 6 cut(s) | 59, 338, 623, 629, 1098, 1099 |
| SduI | GDGCHC | 3 cut(s) | 343, 786, 987 |
| SfaNI | GCATC | 4 cut(s) | 372, 706, 1021, 1207 |
| SfcI | CTRYAG | 2 cut(s) | 47, 998 |
| SinI | GGWCC | 4 cut(s) | 61, 209, 324, 672 |
| SmaI | CCCGGG | 1 cut(s) | 1099 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 476 |
| SmlI | CTYRAG | 2 cut(s) | 1049, 1070 |
| SmoI | CTYRAG | 2 cut(s) | 1049, 1070 |
| SstI | GAGCTC | 2 cut(s) | 786, 987 |
| StyD4I | CCNGG | 6 cut(s) | 57, 336, 621, 627, 1096, 1097 |
| TaaI | ACNGT | 2 cut(s) | 270, 961 |
| TaiI | ACGT | 1 cut(s) | 448 |
| TaqI | TCGA | 9 cut(s) | 284, 375, 393, 408, 486, 600, 615, 695, 714 |
| TauI | GCSGC | 3 cut(s) | 453, 551, 1069 |
| TfiI | GAWTC | 3 cut(s) | 230, 602, 635 |
| Tru1I | TTAA | 3 cut(s) | 156, 1050, 1071 |
| Tru9I | TTAA | 3 cut(s) | 156, 1050, 1071 |
| TseFI | GTSAC | 2 cut(s) | 934, 1213 |
| Tsp45I | GTSAC | 2 cut(s) | 934, 1213 |
| TspGWI | ACGGA | 3 cut(s) | 586, 748, 923 |
| TspMI | CCCGGG | 1 cut(s) | 1097 |
| Vha464I | CTTAAG | 2 cut(s) | 1049, 1070 |
| VpaK11BI | GGWCC | 4 cut(s) | 61, 209, 324, 672 |
| XmaI | CCCGGG | 1 cut(s) | 1097 |
| XmiI | GTMKAC | 1 cut(s) | 869 |
| XmnI | GAANNNNTTC | 1 cut(s) | 746 |