Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010378

Physical Location & Seq

Genomic Coordinates Forward (+)

13061971 .. 13062552

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0097600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCGTGCTCGAATACCTACAGAACCACCATGAAATCGCAGACTCTCAACTCTTCGCAGCCCAAGCCAATATCAACCACGACGACATCGCTAATGCTATTAAGTCTCACTGGTCATGGATACGTTGACTCTCAGGAGATTAAAAAGGAGACATGGTTGCTCACCGAGGAAGGAAAGACATATGCTGTTCATGGATCACCTGAAGTGCGTCTCTACCTGGCCATACCACAAGAGGGTATCACAAAAGATGAATTGCAGAAAAAGTTCGATGCATCAGAATTCAAAATAGCTTGCGCCAAGGCTGCACAGAATAGATGGGTGGACTTCGGAAGGCAACTAGTGACCAGGAAGATCCAACTTGTGGATAATGACAAGGTCCAAACTTTGCTTCTACAGATACAAGACGCAGAGGAAAACATCAGCCAAGATGACATCAAGGCTCTCACCAAAAGAAAGCTTATTGTTCTACAAGTGAAGAAAGGCTTCTCAGTGAGAAGAGGTCCCAATTATGCTCTCCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

174

Amino Acids

19.71

Weight (kDa)

9.3

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PheRS_DBD3	PF18553	66 - 118	6.1e-12	PheRS DNA binding domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43700
fragaria_vesca	FvH4_2g14020 FvH4_2g14020
malus_domestica	MD05G1022300.v1.1 MD10G1023800.v1.1
prunus_persica	Prupe.8G026300_v2.0.a1
pyrus_communis	pycom05g01310 pycom10g01570
rosa_chinensis	RchiOBHm_Chr6g0275921
rosa_laevigata	RLG00000013423
rosa_multiflora	Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004
rosa_roxburghii	Rroxscaffold_7G00192770
rosa_rugosa	Rorug06G0097400 Rorug06G0097500 Rorug06G0097600
rosa_samantha	Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400
rosa_wichuraiana	Rw6G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AclWI	GGATC	2 cut(s)	202, 346
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	233, 361
AgsI	TTSAA	1 cut(s)	283
AhlI	ACTAGT	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	216, 344
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AluBI	AGCT	2 cut(s)	290, 457
AluI	AGCT	2 cut(s)	290, 457
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	3 cut(s)	110, 143, 215
AlwI	GGATC	2 cut(s)	202, 346
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	58, 302
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	2 cut(s)	263, 482
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	376, 500
AsuHPI	GGTGA	3 cut(s)	154, 189, 436
AvaII	GGWCC	2 cut(s)	376, 500
BalI	TGGCCA	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	70, 289
BccI	CCATC	1 cut(s)	309
BciT130I	CCWGG	2 cut(s)	218, 346
BciVI	GTATCC	1 cut(s)	113
BcoDI	GTCTC	3 cut(s)	110, 143, 215
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	2 cut(s)	19, 392
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	59, 303
BlsI	GCNGC	2 cut(s)	60, 304
Bme1390I	CCNGG	2 cut(s)	218, 346
Bme18I	GGWCC	2 cut(s)	376, 500
BmgT120I	GGNCC	2 cut(s)	376, 500
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	2 cut(s)	218, 346
BmsI	GCATC	2 cut(s)	259, 281
BsaJI	CCNNGG	2 cut(s)	165, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 361
Bse1I	ACTGG	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	218, 346
BseDI	CCNNGG	2 cut(s)	165, 297
BseLI	CCNNNNNNNGG	2 cut(s)	233, 361
BseMII	CTCAG	2 cut(s)	146, 501
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	70, 289
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	233, 361
BsmAI	GTCTC	3 cut(s)	110, 143, 215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	194, 351
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	145, 500
BspLI	GGNNCC	1 cut(s)	502
BspPI	GGATC	2 cut(s)	202, 346
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	165, 297
BssMI	GATC	2 cut(s)	194, 351
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	218, 346
Bst4CI	ACNGT	1 cut(s)	522
Bst6I	CTCTTC	2 cut(s)	58, 490
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	132, 487
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	197, 354
BstMAI	GTCTC	3 cut(s)	110, 143, 215
BstMBI	GATC	2 cut(s)	194, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 302
BstNI	CCWGG	2 cut(s)	218, 346
BstSCI	CCNGG	2 cut(s)	216, 344
BstSFI	CTRYAG	2 cut(s)	19, 392
BstV1I	GCAGC	2 cut(s)	70, 289
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	108, 495
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	376, 500
CseI	GACGC	2 cut(s)	197, 413
CviAII	CATG	4 cut(s)	31, 116, 153, 191
CviJI	RGCY	9 cut(s)	61, 67, 221, 290, 302, 423, 440, 457, 483
CviKI_1	RGCY	9 cut(s)	61, 67, 221, 290, 302, 423, 440, 457, 483
DdeI	CTNAG	2 cut(s)	132, 487
DpnI	GATC	2 cut(s)	196, 353
DpnII	GATC	2 cut(s)	194, 351
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	58, 490
EarI	CTCTTC	2 cut(s)	58, 490
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	376, 500
Eco57I	CTGAAG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	216, 344
EcoT14I	CCWWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	4 cut(s)	34, 119, 156, 194
FaiI	YATR	8 cut(s)	32, 117, 154, 181, 183, 192, 224, 510
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	4 cut(s)	30, 115, 152, 190
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	59, 303
Fsp4HI	GCNGC	2 cut(s)	59, 303
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	59, 303
HaeIII	GGCC	1 cut(s)	221
HgaI	GACGC	2 cut(s)	197, 413
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	4 cut(s)	34, 119, 156, 194
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	2 cut(s)	43, 128
HphI	GGTGA	3 cut(s)	154, 189, 436
Hpy166II	GTNNAC	2 cut(s)	127, 322
Hpy188I	TCNGA	2 cut(s)	277, 329
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	2 cut(s)	127, 322
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	164, 324
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	256, 272, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 302
HpyF3I	CTNAG	2 cut(s)	132, 487
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	34, 119, 156, 194
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	194, 351
LpnPI	CCDG	7 cut(s)	96, 119, 203, 213, 230, 331, 358
Lsp1109I	GCAGC	2 cut(s)	70, 289
LweI	GCATC	2 cut(s)	259, 281
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	196, 353
MboI	GATC	2 cut(s)	194, 351
MboII	GAAGA	4 cut(s)	45, 361, 487, 507
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	3 cut(s)	251, 278, 505
MluNI	TGGCCA	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	37, 122
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	4 cut(s)	160, 226, 403, 491
Mox20I	TGGCCA	1 cut(s)	221
Mph1103I	ATGCAT	1 cut(s)	274
MroXI	GAANNNNTTC	2 cut(s)	263, 482
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	2 cut(s)	101, 141
Msp20I	TGGCCA	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	218, 346
MvaI	CCWGG	2 cut(s)	218, 346
MwoI	GCNNNNNNNGC	2 cut(s)	64, 302
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	2 cut(s)	194, 351
NlaIII	CATG	4 cut(s)	34, 119, 156, 194
NlaIV	GGNNCC	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	274
PdmI	GAANNNNTTC	2 cut(s)	263, 482
PflFI	GACNNNGTC	1 cut(s)	374
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	60, 304
PleI	GAGTC	2 cut(s)	37, 122
PpsI	GAGTC	2 cut(s)	37, 122
PpuMI	RGGWCCY	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	216, 344
PspGI	CCWGG	2 cut(s)	216, 344
PspN4I	GGNNCC	1 cut(s)	502
PspPI	GGNCC	2 cut(s)	376, 500
PspPPI	RGGWCCY	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	351
PsyI	GACNNNGTC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	101, 141
SatI	GCNGC	2 cut(s)	59, 303
Sau3AI	GATC	2 cut(s)	194, 351
Sau96I	GGNCC	2 cut(s)	376, 500
SchI	GAGTC	2 cut(s)	37, 122
ScrFI	CCNGG	2 cut(s)	218, 346
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	8 cut(s)	20, 126, 202, 219, 292, 378, 459, 502
SfaNI	GCATC	2 cut(s)	259, 281
SfcI	CTRYAG	2 cut(s)	19, 392
SinI	GGWCC	2 cut(s)	376, 500
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	3 cut(s)	251, 278, 505
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	216, 344
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	11, 267
TasI	AATT	3 cut(s)	251, 278, 505
Tru1I	TTAA	2 cut(s)	101, 141
Tru9I	TTAA	2 cut(s)	101, 141
TscAI	CASTG	2 cut(s)	115, 495
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	58, 302
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	47, 179, 264
TspRI	CASTG	2 cut(s)	115, 495
Tth111I	GACNNNGTC	1 cut(s)	374
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	2 cut(s)	376, 500
XapI	RAATTY	1 cut(s)	278
XmnI	GAANNNNTTC	2 cut(s)	263, 482
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.