Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010378

Physical Location & Seq

Genomic Coordinates Forward (+)

36130827 .. 36134998

Gene Structure 4172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCCGATCGACTCCGACGACTCCTCCGCCTCCCGCCCCAGGCCCAGCTCCTCCTCCGGCCCCAGCGCCGCGGCCGCGCATTTCCGCAGCCTCTCCGTCGACTCCGACTTCTTCGACGGCCTGGCGCTCGCCGGAGACGCCGGCGGGAAGGAGGTCGTTGGGGGTAAGAGGGCCGGCGGCGGCCACCACAGGCACAGCAACTCCATGGACGGCTCCTTTGATTCTGAGCTCTCTCTCGATGGGCTCAAGAAGTCCATAACTCCCGATAAGCTGGCTGAGCTCTCTCTGATTGACCCTAAGAGAGCTAAAAGGATCTTAGCTAATAGACAATCCGCTGCGAGGTCCAAGGAGAGGAAGGTGAGATATGCAAATGAGCTGGAGAGGAAGGTGCAGACGCTTCAGACAGAGGCAACCACCCTATCGGCACAGGTCACACTGTTACAGAGAGACACTACTGCAATAACTGCTGAAAATAAGGAGCTTAAAATTCGGCTACAGTCTATGGAGCAACAAGCACAGCTGAGAGATGCCTTGAATGAAAAATTAAAGGAGGAAGTGGAGCGGCTTAAGATTGAAACCAGCCAAATCCCCCATGGGAGTGGAAACCCTTTCTACAGAGGGCTCCCCCCTCAATATGCGCCGCCTCAGTCTGCCTTGCATAATCAGCTGGGTGGTAGCCAGAGCCAGCACCAGCACCAGCAGCTTCACATGCTTCACAACCAGAACGTCAACGGGCAGCCTCACCCGAGTTTCATGGACTTCAACCAGAGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

258

Amino Acids

28.31

Weight (kDa)

9.1

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	98 - 149	3.3e-07	Basic region leucine zipper
bZIP_1	PF00170	100 - 148	9e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43700
fragaria_vesca	FvH4_2g14020 FvH4_2g14020
malus_domestica	MD05G1022300.v1.1 MD10G1023800.v1.1
prunus_persica	Prupe.8G026300_v2.0.a1
pyrus_communis	pycom05g01310 pycom10g01570
rosa_chinensis	RchiOBHm_Chr6g0275921
rosa_laevigata	RLG00000013423
rosa_multiflora	Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004
rosa_roxburghii	Rroxscaffold_7G00192770
rosa_rugosa	Rorug06G0097400 Rorug06G0097500 Rorug06G0097600
rosa_samantha	Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400
rosa_wichuraiana	Rw6G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	2 cut(s)	71, 77
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	2 cut(s)	72, 181
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	3 cut(s)	39, 339, 351
AflII	CTTAAG	1 cut(s)	566
AgsI	TTSAA	3 cut(s)	535, 575, 763
AjnI	CCWGG	2 cut(s)	38, 120
Alw21I	GWGCWC	2 cut(s)	231, 282
Alw26I	GTCTC	2 cut(s)	129, 441
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	745
AoxI	GGCC	6 cut(s)	41, 58, 72, 118, 171, 181
ApeKI	GCWGC	4 cut(s)	87, 335, 700, 736
ApoI	RAATTY	1 cut(s)	486
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	4 cut(s)	68, 79, 127, 640
AspS9I	GGNCC	4 cut(s)	42, 59, 171, 342
AsuHPI	GGTGA	2 cut(s)	370, 734
AvaI	CYCGRG	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	342
BanII	GRGCYC	4 cut(s)	231, 246, 282, 624
Bbv12I	GWGCWC	2 cut(s)	231, 282
BbvI	GCAGC	4 cut(s)	99, 322, 712, 748
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	2 cut(s)	133, 226
BciT130I	CCWGG	2 cut(s)	40, 122
BcoDI	GTCTC	2 cut(s)	129, 441
BfmI	CTRYAG	2 cut(s)	494, 613
BfoI	RGCGCY	2 cut(s)	69, 128
BfrI	CTTAAG	1 cut(s)	566
BlpI	GCTNAGC	1 cut(s)	276
Bme1390I	CCNGG	2 cut(s)	40, 122
Bme18I	GGWCC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	745
BmgT120I	GGNCC	4 cut(s)	42, 59, 171, 342
BmiI	GGNNCC	3 cut(s)	61, 214, 623
BmrFI	CCNGG	2 cut(s)	40, 122
BmsI	GCATC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	398
Bpu1102I	GCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	5 cut(s)	38, 69, 204, 345, 592
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 185, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 339, 351
Bse118I	RCCGGY	2 cut(s)	140, 173
BseBI	CCWGG	2 cut(s)	40, 122
BseDI	CCNNGG	5 cut(s)	38, 69, 204, 345, 592
BseLI	CCNNNNNNNGG	3 cut(s)	39, 339, 351
BseMII	CTCAG	4 cut(s)	216, 267, 512, 659
BseRI	GAGGAG	3 cut(s)	13, 40, 43
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	4 cut(s)	99, 322, 712, 748
BseYI	CCCAGC	3 cut(s)	44, 62, 667
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	2 cut(s)	71, 77
Bsh1285I	CGRYCG	2 cut(s)	9, 75
BshFI	GGCC	6 cut(s)	43, 60, 74, 120, 173, 183
BsiEI	CGRYCG	2 cut(s)	9, 75
BsiHKAI	GWGCWC	2 cut(s)	231, 282
BsiHKCI	CYCGRG	1 cut(s)	745
BsiSI	CCGG	4 cut(s)	57, 132, 141, 174
BslI	CCNNNNNNNGG	3 cut(s)	39, 339, 351
BsmAI	GTCTC	2 cut(s)	129, 441
BsmBI	CGTCTC	1 cut(s)	129
BsnI	GGCC	6 cut(s)	43, 60, 74, 120, 173, 183
BsoBI	CYCGRG	1 cut(s)	745
Bsp1286I	GDGCHC	4 cut(s)	231, 246, 282, 624
Bsp143I	GATC	2 cut(s)	6, 312
Bsp1720I	GCTNAGC	1 cut(s)	276
Bsp19I	CCATGG	2 cut(s)	204, 592
BspANI	GGCC	6 cut(s)	43, 60, 74, 120, 173, 183
BspCNI	CTCAG	4 cut(s)	217, 268, 513, 658
BspFNI	CGCG	2 cut(s)	71, 77
BspLI	GGNNCC	3 cut(s)	61, 214, 623
BspPI	GGATC	1 cut(s)	320
BspTI	CTTAAG	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	562
BsrFI	RCCGGY	2 cut(s)	140, 173
BssAI	RCCGGY	2 cut(s)	140, 173
BssECI	CCNNGG	5 cut(s)	38, 69, 204, 345, 592
BssMI	GATC	2 cut(s)	6, 312
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	3 cut(s)	204, 345, 592
Bst2UI	CCWGG	2 cut(s)	40, 122
Bst4CI	ACNGT	2 cut(s)	438, 498
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	5 cut(s)	129, 142, 175, 273, 686
BstDEI	CTNAG	6 cut(s)	225, 276, 297, 316, 521, 645
BstDSI	CCRYGG	3 cut(s)	69, 204, 592
BstFNI	CGCG	2 cut(s)	71, 77
BstH2I	RGCGCY	2 cut(s)	69, 128
BstHHI	GCGC	4 cut(s)	68, 79, 127, 640
BstKTI	GATC	2 cut(s)	9, 315
BstMAI	GTCTC	2 cut(s)	129, 441
BstMBI	GATC	2 cut(s)	6, 312
BstMCI	CGRYCG	2 cut(s)	9, 75
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 137, 277, 464, 664, 700, 709
BstNI	CCWGG	2 cut(s)	40, 122
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	2 cut(s)	38, 120
BstSFI	CTRYAG	2 cut(s)	494, 613
BstUI	CGCG	2 cut(s)	71, 77
BstV1I	GCAGC	4 cut(s)	99, 322, 712, 748
BstX2I	RGATCY	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	312
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	6 cut(s)	43, 60, 74, 120, 173, 183
BtgI	CCRYGG	3 cut(s)	69, 204, 592
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	5 cut(s)	129, 142, 175, 273, 686
CciNI	GCGGCCGC	1 cut(s)	72
CfoI	GCGC	4 cut(s)	68, 79, 127, 640
Cfr10I	RCCGGY	2 cut(s)	140, 173
Cfr13I	GGNCC	4 cut(s)	42, 59, 171, 342
Cfr42I	CCGCGG	1 cut(s)	72
CseI	GACGC	2 cut(s)	146, 403
CviAII	CATG	4 cut(s)	205, 593, 709, 754
DdeI	CTNAG	6 cut(s)	225, 276, 297, 316, 521, 645
DpnI	GATC	2 cut(s)	8, 314
DpnII	GATC	2 cut(s)	6, 312
EaeI	YGGCCR	2 cut(s)	72, 181
EagI	CGGCCG	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	16
Ecl136II	GAGCTC	2 cut(s)	229, 280
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	3 cut(s)	204, 345, 592
Eco24I	GRGCYC	4 cut(s)	231, 246, 282, 624
Eco47I	GGWCC	1 cut(s)	342
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	2 cut(s)	229, 280
Eco57I	CTGAAG	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	745
EcoICRI	GAGCTC	2 cut(s)	229, 280
EcoRII	CCWGG	2 cut(s)	38, 120
EcoT14I	CCWWGG	3 cut(s)	204, 345, 592
EcoT38I	GRGCYC	4 cut(s)	231, 246, 282, 624
ErhI	CCWWGG	3 cut(s)	204, 345, 592
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	4 cut(s)	208, 596, 712, 757
FaiI	YATR	9 cut(s)	206, 257, 366, 503, 594, 636, 660, 710, 755
FatI	CATG	4 cut(s)	204, 592, 708, 753
FauI	CCCGC	2 cut(s)	41, 137
FblI	GTMKAC	1 cut(s)	99
FriOI	GRGCYC	4 cut(s)	231, 246, 282, 624
GlaI	GCGC	4 cut(s)	67, 78, 126, 639
GsaI	CCCAGC	3 cut(s)	48, 66, 671
GsuI	CTGGAG	1 cut(s)	398
HaeII	RGCGCY	2 cut(s)	69, 128
HaeIII	GGCC	6 cut(s)	43, 60, 74, 120, 173, 183
HapII	CCGG	4 cut(s)	57, 132, 141, 174
HgaI	GACGC	2 cut(s)	146, 403
HhaI	GCGC	4 cut(s)	68, 79, 127, 640
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	208, 596, 712, 757
Hin6I	GCGC	4 cut(s)	66, 77, 125, 638
HinP1I	GCGC	4 cut(s)	66, 77, 125, 638
HincII	GTYRAC	2 cut(s)	100, 730
HindII	GTYRAC	2 cut(s)	100, 730
HinfI	GANTC	4 cut(s)	11, 20, 101, 221
HpaII	CCGG	4 cut(s)	57, 132, 141, 174
HphI	GGTGA	2 cut(s)	370, 734
Hpy166II	GTNNAC	2 cut(s)	100, 730
Hpy188I	TCNGA	5 cut(s)	16, 106, 226, 288, 402
Hpy188III	TCNNGA	3 cut(s)	236, 247, 263
Hpy8I	GTNNAC	2 cut(s)	100, 730
Hpy99I	CGWCG	3 cut(s)	20, 101, 119
HpyAV	CCTTC	3 cut(s)	142, 349, 379
HpyCH4III	ACNGT	2 cut(s)	438, 498
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	4 cut(s)	368, 391, 458, 658
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 137, 277, 464, 664, 700, 709
HpyF3I	CTNAG	6 cut(s)	225, 276, 297, 316, 521, 645
HpySE526I	ACGT	1 cut(s)	726
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	208, 596, 712, 757
HspAI	GCGC	4 cut(s)	66, 77, 125, 638
KroI	GCCGGC	2 cut(s)	140, 173
KroNI	GCCGGC	2 cut(s)	142, 175
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	6, 312
LmnI	GCTCC	6 cut(s)	53, 218, 478, 505, 559, 627
Lsp1109I	GCAGC	4 cut(s)	99, 322, 712, 748
LweI	GCATC	1 cut(s)	517
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	2 cut(s)	430, 438
MalI	GATC	2 cut(s)	8, 314
MbiI	CCGCTC	1 cut(s)	562
MboI	GATC	2 cut(s)	6, 312
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	4 cut(s)	231, 246, 282, 624
MluCI	AATT	2 cut(s)	486, 542
MlyI	GAGTC	3 cut(s)	5, 14, 95
MmeI	TCCRAC	2 cut(s)	39, 129
MreI	CGCCGGCG	1 cut(s)	140
MroNI	GCCGGC	2 cut(s)	140, 173
MseI	TTAA	3 cut(s)	483, 545, 567
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	4 cut(s)	71, 335, 520, 667
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	4 cut(s)	57, 132, 141, 174
MspR9I	CCNGG	2 cut(s)	40, 122
MvaI	CCWGG	2 cut(s)	40, 122
MvnI	CGCG	2 cut(s)	71, 77
MwoI	GCNNNNNNNGC	7 cut(s)	74, 137, 277, 464, 664, 700, 709
NaeI	GCCGGC	2 cut(s)	142, 175
NcoI	CCATGG	2 cut(s)	204, 592
NdeII	GATC	2 cut(s)	6, 312
NgoMIV	GCCGGC	2 cut(s)	140, 173
NlaIII	CATG	4 cut(s)	208, 596, 712, 757
NlaIV	GGNNCC	3 cut(s)	61, 214, 623
NmuCI	GTSAC	1 cut(s)	430
NotI	GCGGCCGC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdiI	GCCGGC	2 cut(s)	142, 175
PfeI	GAWTC	1 cut(s)	221
Ple19I	CGATCG	1 cut(s)	9
PleI	GAGTC	3 cut(s)	5, 14, 95
PpsI	GAGTC	3 cut(s)	5, 14, 95
Psp124BI	GAGCTC	2 cut(s)	231, 282
Psp6I	CCWGG	2 cut(s)	38, 120
PspFI	CCCAGC	3 cut(s)	44, 62, 667
PspGI	CCWGG	2 cut(s)	38, 120
PspN4I	GGNNCC	3 cut(s)	61, 214, 623
PspPI	GGNCC	4 cut(s)	42, 59, 171, 342
PsuI	RGATCY	1 cut(s)	312
PvuI	CGATCG	1 cut(s)	9
PvuII	CAGCTG	2 cut(s)	520, 667
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	2 cut(s)	231, 282
SacII	CCGCGG	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	483, 545, 567
Sau3AI	GATC	2 cut(s)	6, 312
Sau96I	GGNCC	4 cut(s)	42, 59, 171, 342
SchI	GAGTC	3 cut(s)	5, 14, 95
ScrFI	CCNGG	2 cut(s)	40, 122
SduI	GDGCHC	4 cut(s)	231, 246, 282, 624
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	2 cut(s)	494, 613
Sfr303I	CCGCGG	1 cut(s)	72
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	2 cut(s)	245, 566
SmoI	CTYRAG	2 cut(s)	245, 566
Sse9I	AATT	2 cut(s)	486, 542
SstI	GAGCTC	2 cut(s)	231, 282
StyD4I	CCNGG	2 cut(s)	38, 120
StyI	CCWWGG	3 cut(s)	204, 345, 592
TaaI	ACNGT	2 cut(s)	438, 498
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	4 cut(s)	9, 99, 114, 237
TasI	AATT	2 cut(s)	486, 542
TauI	GCSGC	7 cut(s)	71, 74, 77, 180, 183, 565, 643
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	3 cut(s)	483, 545, 567
Tru9I	TTAA	3 cut(s)	483, 545, 567
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	4 cut(s)	87, 335, 700, 736
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	552, 742
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	441
Vha464I	CTTAAG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	342
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.