Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010378

Physical Location & Seq

Genomic Coordinates Forward (+)

36505439 .. 36509919

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGATTCCAACAGCAACAACAACAGCCACAGCTTCAGCTCCTCAACCGACATTGAGCAGATGCCGGAGACCCCCCACCGCGGTGGGTCCTACCACCGCCGCGCCCACTCCGACTTCTCCTCCTTCCGCCTCCCCAACTTCGACGACCTCCTCCTCTTCGACCCTTCCGACCTCGACCTCTCCTCCTTCCCCTCCCCCTCTCCCGTCCCCCCGCCACGTGGCACCACCAACTCCAACTCCAACTCCAACTCCGCCGCCGCAGCCGTCCCCATGCCGATCGACTCCGACGACTCCTCCGCCTCCCGACCCAGGCCCAGCTCCTCCTCCGGCCCCAGCGCCGCGGCCGCGCATTTCCGCAGCCTCTCCGTCGACTCCGACTTCTTCGACGGCCTCGCGCTCGCCGGAGACGCCGGCGGGAAGGAGGTCGTTGGGGGTAAGAGGGCCGGCGGCGGCCACCACAGGCACAGCAACTCCATGGACGGCTCCTTTGATTCTGAGCTCTCTCTCGATGGGCTCAAGAAGTCCATAACTCCTGATAAGCTGGCTGAGCTCTCTCTGATTGACCCTAAGAGAGCTAAAAGGATCTTAGCTAATAGACAATCCGCTGCGAGGTCCAAGGAGAGGAAAGTGAGATATGCAAATGAGCTGGAGAGGAAGGTGCAGACGCTTCAGACAGAGGCAACCACCCTATCGGCACAGGTCACACTGTTACAGGTAATACCTAAGACTTTGACTTTTGTAGGTTCTTGGAATGATAAGGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

255

Amino Acids

27.29

Weight (kDa)

6.71

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	188 - 238	3.2e-07	Basic region leucine zipper
bZIP_1	PF00170	190 - 237	3.4e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43700
fragaria_vesca	FvH4_2g14020 FvH4_2g14020
malus_domestica	MD05G1022300.v1.1 MD10G1023800.v1.1
prunus_persica	Prupe.8G026300_v2.0.a1
pyrus_communis	pycom05g01310 pycom10g01570
rosa_chinensis	RchiOBHm_Chr6g0275921
rosa_laevigata	RLG00000013423
rosa_multiflora	Rmu_co8294175.1_g000001 Rmu_sc0002030.1_g000004
rosa_roxburghii	Rroxscaffold_7G00192770
rosa_rugosa	Rorug06G0097400 Rorug06G0097500 Rorug06G0097600
rosa_samantha	Rh6AG209000 Rh6BG213100 Rh6CG215800 Rh6DG205400
rosa_wichuraiana	Rw6G018220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	5 cut(s)	81, 102, 341, 347, 395
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	2 cut(s)	342, 451
AcuI	CTGAAG	2 cut(s)	19, 653
AcvI	CACGTG	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	408
AfiI	CCNNNNNNNGG	5 cut(s)	80, 218, 309, 609, 621
AjnI	CCWGG	1 cut(s)	308
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	9 cut(s)	33, 39, 318, 499, 541, 550, 575, 590, 646
AluI	AGCT	9 cut(s)	33, 39, 318, 499, 541, 550, 575, 590, 646
Alw21I	GWGCWC	2 cut(s)	501, 552
Alw26I	GTCTC	2 cut(s)	62, 399
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	6 cut(s)	311, 328, 342, 388, 441, 451
ApeKI	GCWGC	3 cut(s)	260, 357, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspLEI	GCGC	4 cut(s)	104, 338, 349, 397
AspS9I	GGNCC	5 cut(s)	87, 312, 329, 441, 612
AvaII	GGWCC	2 cut(s)	87, 612
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	3 cut(s)	501, 516, 552
BbrPI	CACGTG	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	501, 552
BbvI	GCAGC	3 cut(s)	272, 369, 592
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	3 cut(s)	248, 403, 496
BciT130I	CCWGG	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	62, 399
BfoI	RGCGCY	1 cut(s)	339
BlpI	GCTNAGC	1 cut(s)	546
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	2 cut(s)	87, 612
BmgT120I	GGNCC	5 cut(s)	87, 312, 329, 441, 612
BmiI	GGNNCC	4 cut(s)	88, 223, 331, 484
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	668
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	5 cut(s)	79, 308, 339, 474, 615
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 218, 309, 609, 621
Bse118I	RCCGGY	2 cut(s)	410, 443
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	5 cut(s)	79, 308, 339, 474, 615
BseLI	CCNNNNNNNGG	5 cut(s)	80, 218, 309, 609, 621
BseMII	CTCAG	2 cut(s)	486, 537
BseRI	GAGGAG	8 cut(s)	31, 109, 140, 143, 172, 283, 310, 313
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	272, 369, 592
BseYI	CCCAGC	2 cut(s)	314, 332
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	5 cut(s)	81, 102, 341, 347, 395
Bsh1285I	CGRYCG	2 cut(s)	279, 345
BshFI	GGCC	6 cut(s)	313, 330, 344, 390, 443, 453
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	2 cut(s)	279, 345
BsiHKAI	GWGCWC	2 cut(s)	501, 552
BsiSI	CCGG	5 cut(s)	65, 327, 402, 411, 444
BslFI	GGGAC	2 cut(s)	191, 251
BslI	CCNNNNNNNGG	5 cut(s)	80, 218, 309, 609, 621
BsmAI	GTCTC	2 cut(s)	62, 399
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	2 cut(s)	191, 251
BsnI	GGCC	6 cut(s)	313, 330, 344, 390, 443, 453
Bso31I	GGTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	3 cut(s)	501, 516, 552
Bsp143I	GATC	2 cut(s)	276, 582
Bsp1720I	GCTNAGC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	474
BspANI	GGCC	6 cut(s)	313, 330, 344, 390, 443, 453
BspCNI	CTCAG	2 cut(s)	487, 538
BspFNI	CGCG	5 cut(s)	81, 102, 341, 347, 395
BspLI	GGNNCC	4 cut(s)	88, 223, 331, 484
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	62
BsrFI	RCCGGY	2 cut(s)	410, 443
BssAI	RCCGGY	2 cut(s)	410, 443
BssECI	CCNNGG	5 cut(s)	79, 308, 339, 474, 615
BssMI	GATC	2 cut(s)	276, 582
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	474, 615
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	708
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	399, 412, 445, 543
BstDEI	CTNAG	5 cut(s)	495, 546, 567, 586, 723
BstDSI	CCRYGG	3 cut(s)	79, 339, 474
BstFNI	CGCG	5 cut(s)	81, 102, 341, 347, 395
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	4 cut(s)	104, 338, 349, 397
BstKTI	GATC	2 cut(s)	279, 585
BstMAI	GTCTC	2 cut(s)	62, 399
BstMBI	GATC	2 cut(s)	276, 582
BstMCI	CGRYCG	2 cut(s)	279, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 344, 407, 547
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	5 cut(s)	81, 102, 341, 347, 395
BstV1I	GCAGC	3 cut(s)	272, 369, 592
BstX2I	RGATCY	1 cut(s)	582
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	582
BstZI	CGGCCG	1 cut(s)	342
BsuRI	GGCC	6 cut(s)	313, 330, 344, 390, 443, 453
BtgI	CCRYGG	3 cut(s)	79, 339, 474
BtsIMutI	CAGTG	1 cut(s)	704
Cac8I	GCNNGC	4 cut(s)	399, 412, 445, 543
CciNI	GCGGCCGC	1 cut(s)	342
CfoI	GCGC	4 cut(s)	104, 338, 349, 397
Cfr10I	RCCGGY	2 cut(s)	410, 443
Cfr13I	GGNCC	5 cut(s)	87, 312, 329, 441, 612
Cfr42I	CCGCGG	2 cut(s)	82, 342
CseI	GACGC	2 cut(s)	416, 673
CviAII	CATG	2 cut(s)	271, 475
DdeI	CTNAG	5 cut(s)	495, 546, 567, 586, 723
DpnI	GATC	2 cut(s)	278, 584
DpnII	GATC	2 cut(s)	276, 582
EaeI	YGGCCR	2 cut(s)	342, 451
EagI	CGGCCG	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	3 cut(s)	116, 241, 286
Ecl136II	GAGCTC	2 cut(s)	499, 550
EclXI	CGGCCG	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	474, 615
Eco24I	GRGCYC	3 cut(s)	501, 516, 552
Eco31I	GGTCTC	1 cut(s)	62
Eco47I	GGWCC	2 cut(s)	87, 612
Eco52I	CGGCCG	1 cut(s)	342
Eco53kI	GAGCTC	2 cut(s)	499, 550
Eco57I	CTGAAG	2 cut(s)	19, 653
Eco72I	CACGTG	1 cut(s)	218
EcoICRI	GAGCTC	2 cut(s)	499, 550
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	474, 615
EcoT38I	GRGCYC	3 cut(s)	501, 516, 552
ErhI	CCWWGG	2 cut(s)	474, 615
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	2 cut(s)	274, 478
FaiI	YATR	5 cut(s)	272, 476, 527, 636, 766
FaqI	GGGAC	2 cut(s)	191, 251
FatI	CATG	2 cut(s)	270, 474
FauI	CCCGC	2 cut(s)	219, 407
FblI	GTMKAC	1 cut(s)	369
FriOI	GRGCYC	3 cut(s)	501, 516, 552
GlaI	GCGC	4 cut(s)	103, 337, 348, 396
GsaI	CCCAGC	2 cut(s)	318, 336
GsuI	CTGGAG	1 cut(s)	668
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	6 cut(s)	313, 330, 344, 390, 443, 453
HapII	CCGG	5 cut(s)	65, 327, 402, 411, 444
HgaI	GACGC	2 cut(s)	416, 673
HhaI	GCGC	4 cut(s)	104, 338, 349, 397
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	274, 478
Hin6I	GCGC	4 cut(s)	102, 336, 347, 395
HinP1I	GCGC	4 cut(s)	102, 336, 347, 395
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	5 cut(s)	5, 281, 290, 371, 491
HpaII	CCGG	5 cut(s)	65, 327, 402, 411, 444
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	7 cut(s)	112, 169, 286, 376, 496, 558, 672
Hpy188III	TCNNGA	4 cut(s)	303, 506, 517, 533
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	4 cut(s)	146, 290, 371, 389
HpyAV	CCTTC	5 cut(s)	133, 174, 196, 412, 649
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	638, 661
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 344, 407, 547
HpyF3I	CTNAG	5 cut(s)	495, 546, 567, 586, 723
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	274, 478
HspAI	GCGC	4 cut(s)	102, 336, 347, 395
KroI	GCCGGC	2 cut(s)	410, 443
KroNI	GCCGGC	2 cut(s)	412, 445
KspI	CCGCGG	2 cut(s)	82, 342
Kzo9I	GATC	2 cut(s)	276, 582
LmnI	GCTCC	3 cut(s)	44, 323, 488
Lsp1109I	GCAGC	3 cut(s)	272, 369, 592
LweI	GCATC	1 cut(s)	51
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	2 cut(s)	700, 708
MalI	GATC	2 cut(s)	278, 584
MboI	GATC	2 cut(s)	276, 582
MboII	GAAGA	2 cut(s)	148, 373
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	3 cut(s)	501, 516, 552
MlyI	GAGTC	3 cut(s)	275, 284, 365
MmeI	TCCRAC	8 cut(s)	33, 135, 192, 258, 264, 270, 309, 399
MreI	CGCCGGCG	1 cut(s)	410
MroNI	GCCGGC	2 cut(s)	410, 443
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	3 cut(s)	81, 341, 605
MspI	CCGG	5 cut(s)	65, 327, 402, 411, 444
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	5 cut(s)	81, 102, 341, 347, 395
MwoI	GCNNNNNNNGC	4 cut(s)	260, 344, 407, 547
NaeI	GCCGGC	2 cut(s)	412, 445
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	2 cut(s)	276, 582
NgoMIV	GCCGGC	2 cut(s)	410, 443
NlaIII	CATG	2 cut(s)	274, 478
NlaIV	GGNNCC	4 cut(s)	88, 223, 331, 484
NmuCI	GTSAC	1 cut(s)	700
NotI	GCGGCCGC	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 285
PdiI	GCCGGC	2 cut(s)	412, 445
PfeI	GAWTC	2 cut(s)	5, 491
Ple19I	CGATCG	1 cut(s)	279
PleI	GAGTC	3 cut(s)	275, 284, 365
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
PpsI	GAGTC	3 cut(s)	275, 284, 365
Ppu21I	YACGTR	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	87
Psp124BI	GAGCTC	2 cut(s)	501, 552
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	308
PspCI	CACGTG	1 cut(s)	218
PspFI	CCCAGC	2 cut(s)	314, 332
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	4 cut(s)	88, 223, 331, 484
PspPI	GGNCC	5 cut(s)	87, 312, 329, 441, 612
PspPPI	RGGWCCY	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	582
PvuI	CGATCG	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	2 cut(s)	501, 552
SacII	CCGCGG	2 cut(s)	82, 342
SalI	GTCGAC	1 cut(s)	368
Sau3AI	GATC	2 cut(s)	276, 582
Sau96I	GGNCC	5 cut(s)	87, 312, 329, 441, 612
SchI	GAGTC	3 cut(s)	275, 284, 365
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	3 cut(s)	501, 516, 552
SfaNI	GCATC	1 cut(s)	51
Sfr303I	CCGCGG	2 cut(s)	82, 342
SgrAI	CRCCGGYG	1 cut(s)	410
SgrBI	CCGCGG	2 cut(s)	82, 342
SinI	GGWCC	2 cut(s)	87, 612
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SstI	GAGCTC	2 cut(s)	501, 552
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	2 cut(s)	474, 615
TaaI	ACNGT	1 cut(s)	708
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	7 cut(s)	141, 159, 174, 279, 369, 384, 507
TauI	GCSGC	8 cut(s)	102, 257, 260, 341, 344, 347, 450, 453
TfiI	GAWTC	2 cut(s)	5, 491
TscAI	CASTG	1 cut(s)	711
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	3 cut(s)	260, 357, 605
Tsp45I	GTSAC	1 cut(s)	700
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	1 cut(s)	711
VpaK11BI	GGWCC	2 cut(s)	87, 612
XmiI	GTMKAC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.