Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

17798431 .. 17802330

Gene Structure 3900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGCTGTTTTGGTTGGTGTGGGAGTGAGGATTTTCGCAACGCTACTGACACTGGCCCAAGGCCAGCGCATAACCCAGCAGGTTACAATGGAGGCCACTACCAAAGAGCTGATCCACCCATGAACCAGCCTGTTATTCCCATGCAGCCTATTTCTGTACCAGCCATTCCAGTGGATGAGCTGAGAGATATAACTGATAACTATGGTTCAAAGACCTTGATCGGCGAGGGTTCTTATGGAAGAGTGTTTTATGGTGTTCTTAAAAGCGGTGGTGCAGCTGCCATCAAGAAACTTGACTCTAGTAAGCAGCCAGATCAAGAATTTCTTTCCCAGATATCAATGGTTTCGAGATTGCGACATGACAATGTTACTGCACTTATGGGCTATTGTGTTGATGGCCCTCTCCGTGTTCTTGCTTATGAATTTGCTCCTAAAGGATCTCTTCATGATACTCTTCATGGCAAAAAAGGTGCCAAAGGAGCACTTAGAGGTCCTGTTATGACGTGGCAACAGAGAGTCAAAATCGCCGTTGGTGCGGCCAGAGGACTTGAGTACTTGCATGAGAAGGTGAGCCCTCAGGTTATCCACCGAGACATCAAATCCAGCAACGTACTTCTGTTTGATGATGATGTTGCCAAAATTGGTGATTTTGATCTGTCTGATCAAGCCCCTGACATGGCTGCTCGCCTTCACTCAACTCGTGTGCTAGGAACCTTTGGCTACCACGCTCCAGAATATGCAATGACAGGAACGTTGAGCTCAAAGAGCGATGTGTACAGTTTTGGCGTTGTTCTGCTGGAGCTCCTAACTGGTCGTAAACCAGTCGATCATACCTTACCGCGTGGACAACAAAGTCTAGTGACATGGGCAACCCCTAAACTAAGTGAAGACAAAGTGAAGCAATGCGTTGATGCAAGACTACTCGGAGAGTACCCTCCCAAAGCTGTTGGCAAGCTAGCTGCAGTGGCTGCACTCTGTGTGCAATATGAGGCAAATTTCAGACCAAACATGAGCATTGTGGTGAAGGCACTTCAACCTCTTTTAAACCCTCCTCGTTCTGCTCCGCAGACTCCACATAGGAACCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

363

Amino Acids

39.59

Weight (kDa)

8.93

Isoelectric Point (pI)

29.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 278	3.2e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	72 - 344	5.3e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	852
Acc36I	ACCTGC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	470
AccII	CGCG	1 cut(s)	841
AciI	CCGC	4 cut(s)	267, 536, 839, 1064
AclI	AACGTT	1 cut(s)	752
AclWI	GGATC	2 cut(s)	107, 445
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	320, 422, 994
AdeI	CACNNNGTG	1 cut(s)	977
AfaI	GTAC	5 cut(s)	159, 554, 612, 776, 932
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	2 cut(s)	210, 1034
AjiI	CACGTC	1 cut(s)	504
AluBI	AGCT	9 cut(s)	6, 110, 181, 278, 759, 802, 944, 955, 959
AluI	AGCT	9 cut(s)	6, 110, 181, 278, 759, 802, 944, 955, 959
Alw21I	GWGCWC	3 cut(s)	484, 761, 804
Alw26I	GTCTC	1 cut(s)	585
AlwI	GGATC	2 cut(s)	107, 445
AlwNI	CAGNNNCTG	1 cut(s)	968
AoxI	GGCC	5 cut(s)	55, 62, 94, 397, 537
ApeKI	GCWGC	7 cut(s)	145, 275, 278, 307, 680, 959, 968
ApoI	RAATTY	3 cut(s)	320, 422, 994
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	3 cut(s)	56, 398, 491
AsuHPI	GGTGA	3 cut(s)	580, 656, 1033
AsuNHI	GCTAGC	1 cut(s)	955
AvaII	GGWCC	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	3 cut(s)	575, 761, 804
BauI	CACGAG	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	3 cut(s)	484, 761, 804
BbvI	GCAGC	7 cut(s)	157, 265, 287, 319, 667, 946, 955
BccI	CCATC	2 cut(s)	290, 389
BceAI	ACGGC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	661
BcoDI	GTCTC	1 cut(s)	585
BfaI	CTAG	4 cut(s)	300, 707, 857, 956
BfmI	CTRYAG	1 cut(s)	960
BfuAI	ACCTGC	1 cut(s)	71
BisI	GCNGC	8 cut(s)	146, 276, 279, 308, 537, 681, 960, 969
BlsI	GCNGC	8 cut(s)	147, 277, 280, 309, 538, 682, 961, 970
BmcAI	AGTACT	1 cut(s)	554
Bme18I	GGWCC	1 cut(s)	491
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	56, 398, 491
BmiI	GGNNCC	3 cut(s)	472, 712, 1082
BmsI	GCATC	1 cut(s)	901
BmtI	GCTAGC	1 cut(s)	959
BpiI	GAAGAC	1 cut(s)	894
BpmI	CTGGAG	2 cut(s)	714, 818
BpuEI	CTTGAG	1 cut(s)	569
BsaBI	GATNNNNATC	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	4 cut(s)	58, 170, 814, 821
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	2 cut(s)	747, 908
Bse8I	GATNNNNATC	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	2 cut(s)	747, 908
BseMII	CTCAG	2 cut(s)	173, 590
BseNI	ACTGG	4 cut(s)	58, 170, 814, 821
BseRI	GAGGAG	1 cut(s)	1041
BseXI	GCAGC	7 cut(s)	157, 265, 287, 319, 667, 946, 955
BseYI	CCCAGC	1 cut(s)	76
BsgI	GTGCAG	3 cut(s)	294, 357, 954
Bsh1236I	CGCG	1 cut(s)	841
BshFI	GGCC	5 cut(s)	57, 64, 96, 399, 539
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	3 cut(s)	484, 761, 804
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	1 cut(s)	585
BsnI	GGCC	5 cut(s)	57, 64, 96, 399, 539
Bsp1286I	GDGCHC	4 cut(s)	484, 575, 761, 804
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	7 cut(s)	112, 219, 313, 437, 652, 661, 826
BspACI	CCGC	4 cut(s)	267, 536, 839, 1064
BspANI	GGCC	5 cut(s)	57, 64, 96, 399, 539
BspCNI	CTCAG	2 cut(s)	174, 589
BspFNI	CGCG	1 cut(s)	841
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	472, 712, 1082
BspMAI	CTGCAG	1 cut(s)	964
BspMI	ACCTGC	1 cut(s)	71
BspOI	GCTAGC	1 cut(s)	959
BspPI	GGATC	2 cut(s)	107, 445
BspT107I	GGYRCC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	747, 908
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	58, 170, 814, 821
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	7 cut(s)	112, 219, 313, 437, 652, 661, 826
BssSI	CACGAG	1 cut(s)	699
BssT1I	CCWWGG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	699
Bst4CI	ACNGT	1 cut(s)	779
Bst6I	CTCTTC	3 cut(s)	235, 447, 459
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstAUI	TGTACA	1 cut(s)	774
BstC8I	GCNNGC	4 cut(s)	66, 685, 953, 957
BstDEI	CTNAG	4 cut(s)	182, 485, 576, 881
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	841
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	7 cut(s)	115, 222, 316, 440, 655, 664, 829
BstMAI	GTCTC	1 cut(s)	585
BstMBI	GATC	7 cut(s)	112, 219, 313, 437, 652, 661, 826
BstMWI	GCNNNNNNNGC	5 cut(s)	479, 533, 765, 965, 968
BstSFI	CTRYAG	1 cut(s)	960
BstUI	CGCG	1 cut(s)	841
BstV1I	GCAGC	7 cut(s)	157, 265, 287, 319, 667, 946, 955
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	437
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	5 cut(s)	57, 64, 96, 399, 539
BtgZI	GCGATG	1 cut(s)	783
BtrI	CACGTC	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	3 cut(s)	51, 177, 969
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	4 cut(s)	66, 685, 953, 957
CaiI	CAGNNNCTG	1 cut(s)	968
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	56, 398, 491
Csp6I	GTAC	5 cut(s)	158, 553, 611, 775, 931
CviAII	CATG	9 cut(s)	121, 142, 359, 446, 458, 560, 676, 864, 1009
CviQI	GTAC	5 cut(s)	158, 553, 611, 775, 931
DdeI	CTNAG	4 cut(s)	182, 485, 576, 881
DpnI	GATC	7 cut(s)	114, 221, 315, 439, 654, 663, 828
DpnII	GATC	7 cut(s)	112, 219, 313, 437, 652, 661, 826
DraI	TTTAAA	1 cut(s)	1044
DraIII	CACNNNGTG	1 cut(s)	977
DrdI	GACNNNNNNGTC	1 cut(s)	852
DseDI	GACNNNNNNGTC	1 cut(s)	852
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	3 cut(s)	235, 447, 459
EarI	CTCTTC	3 cut(s)	235, 447, 459
Ecl136II	GAGCTC	2 cut(s)	759, 802
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	3 cut(s)	575, 761, 804
Eco32I	GATATC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	491
Eco53kI	GAGCTC	2 cut(s)	759, 802
Eco81I	CCTNAGG	1 cut(s)	576
EcoICRI	GAGCTC	2 cut(s)	759, 802
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRV	GATATC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	3 cut(s)	575, 761, 804
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	9 cut(s)	124, 145, 362, 449, 461, 563, 679, 867, 1012
FalI	AAGNNNNNCTT	6 cut(s)	309, 341, 426, 458, 468, 500
FatI	CATG	9 cut(s)	120, 141, 358, 445, 457, 559, 675, 863, 1008
FbaI	TGATCA	1 cut(s)	661
Fnu4HI	GCNGC	8 cut(s)	146, 276, 279, 308, 537, 681, 960, 969
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	3 cut(s)	575, 761, 804
Fsp4HI	GCNGC	8 cut(s)	146, 276, 279, 308, 537, 681, 960, 969
FspBI	CTAG	4 cut(s)	300, 707, 857, 956
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	8 cut(s)	146, 276, 279, 308, 537, 681, 960, 969
GsaI	CCCAGC	1 cut(s)	80
GsuI	CTGGAG	2 cut(s)	714, 818
HaeIII	GGCC	5 cut(s)	57, 64, 96, 399, 539
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	9 cut(s)	124, 145, 362, 449, 461, 563, 679, 867, 1012
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	3 cut(s)	296, 516, 1069
HphI	GGTGA	3 cut(s)	580, 656, 1033
Hpy166II	GTNNAC	3 cut(s)	775, 818, 845
Hpy188I	TCNGA	3 cut(s)	661, 926, 1001
Hpy188III	TCNNGA	5 cut(s)	286, 317, 348, 446, 731
Hpy8I	GTNNAC	3 cut(s)	775, 818, 845
HpyAV	CCTTC	3 cut(s)	559, 698, 1018
HpyCH4III	ACNGT	1 cut(s)	779
HpyCH4IV	ACGT	3 cut(s)	503, 609, 752
HpyCH4V	TGCA	9 cut(s)	145, 275, 374, 559, 740, 914, 962, 971, 982
HpyF10VI	GCNNNNNNNGC	5 cut(s)	479, 533, 765, 965, 968
HpyF3I	CTNAG	4 cut(s)	182, 485, 576, 881
HpySE526I	ACGT	3 cut(s)	503, 609, 752
Hsp92II	CATG	9 cut(s)	124, 145, 362, 449, 461, 563, 679, 867, 1012
HspAI	GCGC	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	7 cut(s)	112, 219, 313, 437, 652, 661, 826
LmnI	GCTCC	6 cut(s)	433, 479, 733, 799, 807, 1066
Lsp1109I	GCAGC	7 cut(s)	157, 265, 287, 319, 667, 946, 955
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	4 cut(s)	300, 707, 857, 956
MaeII	ACGT	3 cut(s)	503, 609, 752
MaeIII	GTNAC	3 cut(s)	83, 367, 859
MalI	GATC	7 cut(s)	114, 221, 315, 439, 654, 663, 828
MboI	GATC	7 cut(s)	112, 219, 313, 437, 652, 661, 826
MboII	GAAGA	4 cut(s)	252, 434, 446, 899
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	4 cut(s)	484, 575, 761, 804
MluCI	AATT	4 cut(s)	320, 422, 639, 994
MlyI	GAGTC	3 cut(s)	290, 525, 1063
MseI	TTAA	2 cut(s)	261, 1043
MslI	CAYNNNNRTG	3 cut(s)	170, 363, 1019
MspA1I	CMGCKG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	841
MwoI	GCNNNNNNNGC	5 cut(s)	479, 533, 765, 965, 968
NdeII	GATC	7 cut(s)	112, 219, 313, 437, 652, 661, 826
NheI	GCTAGC	1 cut(s)	955
NlaIII	CATG	9 cut(s)	124, 145, 362, 449, 461, 563, 679, 867, 1012
NlaIV	GGNNCC	3 cut(s)	472, 712, 1082
NmuCI	GTSAC	1 cut(s)	859
PagI	TCATGA	1 cut(s)	445
PkrI	GCNGC	8 cut(s)	147, 277, 280, 309, 538, 682, 961, 970
PleI	GAGTC	3 cut(s)	290, 524, 1063
PpsI	GAGTC	3 cut(s)	290, 524, 1063
PpuMI	RGGWCCY	1 cut(s)	491
Psp124BI	GAGCTC	2 cut(s)	761, 804
Psp1406I	AACGTT	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	472, 712, 1082
PspPI	GGNCC	3 cut(s)	56, 398, 491
PspPPI	RGGWCCY	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	964
PstNI	CAGNNNCTG	1 cut(s)	968
PsuI	RGATCY	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	5 cut(s)	159, 554, 612, 776, 932
RsaNI	GTAC	5 cut(s)	158, 553, 611, 775, 931
RseI	CAYNNNNRTG	3 cut(s)	170, 363, 1019
SacI	GAGCTC	2 cut(s)	761, 804
SaqAI	TTAA	2 cut(s)	261, 1043
SatI	GCNGC	8 cut(s)	146, 276, 279, 308, 537, 681, 960, 969
Sau3AI	GATC	7 cut(s)	112, 219, 313, 437, 652, 661, 826
Sau96I	GGNCC	3 cut(s)	56, 398, 491
ScaI	AGTACT	1 cut(s)	554
SchI	GAGTC	3 cut(s)	290, 525, 1063
SduI	GDGCHC	4 cut(s)	484, 575, 761, 804
SfaNI	GCATC	1 cut(s)	901
SfcI	CTRYAG	1 cut(s)	960
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	3 cut(s)	170, 363, 1019
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	4 cut(s)	320, 422, 639, 994
SsiI	CCGC	4 cut(s)	267, 536, 839, 1064
SspMI	CTAG	4 cut(s)	300, 707, 857, 956
SstI	GAGCTC	2 cut(s)	761, 804
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	779
TaiI	ACGT	3 cut(s)	506, 612, 755
TaqI	TCGA	2 cut(s)	347, 825
TasI	AATT	4 cut(s)	320, 422, 639, 994
TatI	WGTACW	2 cut(s)	552, 774
TauI	GCSGC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	261, 1043
Tru9I	TTAA	2 cut(s)	261, 1043
TscAI	CASTG	3 cut(s)	58, 177, 969
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	7 cut(s)	145, 275, 278, 307, 680, 959, 968
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	4 cut(s)	137, 434, 435, 446
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	3 cut(s)	58, 177, 969
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	3 cut(s)	320, 422, 994
XspI	CTAG	4 cut(s)	300, 707, 857, 956
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.