Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Reverse (-)

10918463 .. 10922070

Gene Structure 3608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1141200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTTCTGTTATAAAAACATCATGAGCTGCTTCAGTTGTTGTGTACAAGATGATGTCCGTAAAGCTTCTGAGACTCGACCGCATGTGACAAATCACTCAGCAGGCAATAGTGGAGGTTACTATCAGAAAGAAGCTGCACCCAAGGATACTCAGGTTGTAAATATCCTCCCCATCGCTGTCGCTGCCATTCCAGTGGATGAATTGAAAGATTTGACAGATAACTTTGGCACGAAATCTTTAATCGGTGAGGGTTCATATGGAAGAGTATATCATGGTGTTCTGAAAAGTGGGCCTGCTGCAGCTATTAAGAAGTTAGACTCCAGTAAACAACCGGAGCGAGAATTCTTATCGCAGGTCTCCATGGTTTCAAGACTAAAACATGAGAATGCTGTCGAGCTTGTTGGTTATTGTATTGATGGCCCTCTCCGTCTCCTTGCCTATGAGTATGCTCCTAAGGGGTCCCTTCATGATATTCTCCATGGTCGGAAAGGTGTTAAGGGAGCACAGCCAGGTCCGGTTCTGTCATGGGTACAAAGGGTTAAAATTGCTGTAGGAGCAGCGAGAGGACTTGAATATCTACATGAAAAGGCGCAGCCTCATATAATCCATCGTGATATTAAGTCCTGCAATATACTGCTTTTTGATGATGATGTTGCAAAGATTGCTGATTTTGATCTGTCAAATCAAGCACCTGATATGGCAGCACGTCTTCATTCTACTCGTGTTCTTGGGACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAGCTGAGTTCAAAAAGTGATGTCTACAGCTTTGGTGTAGTGTTGCTTGAACTCTTGACTGGGCGTAAACCTGTTGATCACACATTGCCGCGTGGGCAGCAGAGCCTTGTGACATGGGCAACACCAAAACTCAGTGAGGATAAGGTGAAGCAGTGTGTTGATGCTAGACTCAATGGAGAATACCCTTCCAAGGCAGTTGCAAAGTTGGCTGCTGTTGCCGCCTTGTGCGTCCAATATGAAGCTGATTTCCGGCCAAATATGAGCATTGTTGTCAAGGCTCTACAGCCTCTTTTGCATGCTCGGTCCGCTCCCCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

364

Amino Acids

39.71

Weight (kDa)

8.75

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 287	2e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	78 - 351	3.5e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	1079
AccI	GTMKAC	1 cut(s)	795
AccII	CGCG	1 cut(s)	862
AciI	CCGC	4 cut(s)	80, 860, 990, 1077
AcoI	YGGCCR	1 cut(s)	1022
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	16
AfaI	GTAC	2 cut(s)	45, 531
AfiI	CCNNNNNNNGG	1 cut(s)	961
AgsI	TTSAA	5 cut(s)	205, 369, 572, 783, 821
AjiI	CACGTC	1 cut(s)	707
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	8 cut(s)	27, 65, 134, 302, 397, 775, 801, 1013
AluI	AGCT	8 cut(s)	27, 65, 134, 302, 397, 775, 801, 1013
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	3 cut(s)	65, 361, 434
AoxI	GGCC	3 cut(s)	290, 418, 1022
ApoI	RAATTY	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	5 cut(s)	290, 419, 459, 512, 1074
AsuHPI	GGTGA	2 cut(s)	257, 928
AvaII	GGWCC	3 cut(s)	459, 512, 1074
AxyI	CCTNAGG	1 cut(s)	453
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	505
BccI	CCATC	3 cut(s)	179, 410, 615
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	139
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	3 cut(s)	65, 361, 434
BfaI	CTAG	1 cut(s)	936
BfmI	CTRYAG	4 cut(s)	297, 549, 796, 1052
BfuAI	ACCTGC	1 cut(s)	343
BfuI	GTATCC	1 cut(s)	139
BglI	GCCNNNNNGGC	1 cut(s)	865
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	3 cut(s)	459, 512, 1074
BmgBI	CACGTC	1 cut(s)	707
BmgT120I	GGNCC	5 cut(s)	290, 419, 459, 512, 1074
BmiI	GGNNCC	2 cut(s)	460, 461
BmrFI	CCNGG	1 cut(s)	510
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	1 cut(s)	922
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	701
BpmI	CTGGAG	2 cut(s)	304, 735
BsaBI	GATNNNNATC	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	4 cut(s)	141, 360, 478, 960
BsaWI	WCCGGW	2 cut(s)	331, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	961
Bse1I	ACTGG	4 cut(s)	191, 321, 772, 835
Bse21I	CCTNAGG	1 cut(s)	453
Bse3DI	GCAATG	2 cut(s)	768, 854
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	4 cut(s)	141, 360, 478, 960
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	1 cut(s)	961
BseMI	GCAATG	2 cut(s)	768, 854
BseMII	CTCAG	5 cut(s)	60, 111, 164, 767, 916
BseNI	ACTGG	4 cut(s)	191, 321, 772, 835
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	862
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	292, 420, 1024
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	3 cut(s)	332, 515, 1021
BslFI	GGGAC	2 cut(s)	445, 745
BslI	CCNNNNNNNGG	1 cut(s)	961
BsmAI	GTCTC	3 cut(s)	65, 361, 434
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	2 cut(s)	445, 745
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	292, 420, 1024
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	673, 847
Bsp19I	CCATGG	2 cut(s)	360, 478
BspACI	CCGC	4 cut(s)	80, 860, 990, 1077
BspANI	GGCC	3 cut(s)	292, 420, 1024
BspCNI	CTCAG	5 cut(s)	61, 110, 163, 768, 915
BspFNI	CGCG	1 cut(s)	862
BspHI	TCATGA	2 cut(s)	21, 466
BspLI	GGNNCC	2 cut(s)	460, 461
BspMAI	CTGCAG	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	1079
BsrDI	GCAATG	2 cut(s)	768, 854
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	4 cut(s)	191, 321, 772, 835
BssECI	CCNNGG	4 cut(s)	141, 360, 478, 960
BssMI	GATC	2 cut(s)	673, 847
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	4 cut(s)	141, 360, 478, 960
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	256
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	43
BstC8I	GCNNGC	3 cut(s)	103, 294, 1068
BstDEI	CTNAG	6 cut(s)	69, 97, 150, 453, 776, 902
BstDSI	CCRYGG	2 cut(s)	360, 478
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	862
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	2 cut(s)	676, 850
BstMAI	GTCTC	3 cut(s)	65, 361, 434
BstMBI	GATC	2 cut(s)	673, 847
BstMCI	CGRYCG	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	2 cut(s)	86, 1070
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	4 cut(s)	297, 549, 796, 1052
BstUI	CGCG	1 cut(s)	862
BstV2I	GAAGAC	1 cut(s)	701
BstXI	CCANNNNNNTGG	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	3 cut(s)	292, 420, 1024
BtgI	CCRYGG	2 cut(s)	360, 478
BtgZI	GCGATG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	707
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	929
BtsIMutI	CAGTG	3 cut(s)	198, 910, 929
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	3 cut(s)	103, 294, 1068
CciI	TCATGA	2 cut(s)	21, 466
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	5 cut(s)	290, 419, 459, 512, 1074
CpoI	CGGWCCG	1 cut(s)	1074
CseI	GACGC	1 cut(s)	988
Csp6I	GTAC	2 cut(s)	44, 530
CspI	CGGWCCG	1 cut(s)	1074
CviQI	GTAC	2 cut(s)	44, 530
DdeI	CTNAG	6 cut(s)	69, 97, 150, 453, 776, 902
DpnI	GATC	2 cut(s)	675, 849
DpnII	GATC	2 cut(s)	673, 847
EaeI	YGGCCR	1 cut(s)	1022
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco130I	CCWWGG	4 cut(s)	141, 360, 478, 960
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	3 cut(s)	459, 512, 1074
Eco57I	CTGAAG	1 cut(s)	16
Eco81I	CCTNAGG	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	4 cut(s)	141, 360, 478, 960
ErhI	CCWWGG	4 cut(s)	141, 360, 478, 960
Esp3I	CGTCTC	1 cut(s)	434
FaqI	GGGAC	2 cut(s)	445, 745
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	795
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	1 cut(s)	936
GlaI	GCGC	1 cut(s)	591
GsuI	CTGGAG	2 cut(s)	304, 735
HaeIII	GGCC	3 cut(s)	292, 420, 1024
HapII	CCGG	3 cut(s)	332, 515, 1021
HgaI	GACGC	1 cut(s)	988
HhaI	GCGC	1 cut(s)	592
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	3 cut(s)	73, 317, 939
HpaII	CCGG	3 cut(s)	332, 515, 1021
HphI	GGTGA	2 cut(s)	257, 928
Hpy166II	GTNNAC	4 cut(s)	44, 326, 796, 839
Hpy188I	TCNGA	4 cut(s)	70, 126, 282, 486
Hpy188III	TCNNGA	6 cut(s)	22, 369, 467, 611, 752, 826
Hpy8I	GTNNAC	4 cut(s)	44, 326, 796, 839
HpyAV	CCTTC	2 cut(s)	473, 966
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	7 cut(s)	137, 299, 627, 656, 761, 971, 1066
HpyF3I	CTNAG	6 cut(s)	69, 97, 150, 453, 776, 902
HpySE526I	ACGT	1 cut(s)	706
HspAI	GCGC	1 cut(s)	590
KflI	GGGWCCC	1 cut(s)	459
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	2 cut(s)	673, 847
LmnI	GCTCC	6 cut(s)	334, 454, 500, 554, 754, 1084
LweI	GCATC	1 cut(s)	922
MaeI	CTAG	1 cut(s)	936
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	3 cut(s)	85, 116, 880
MalI	GATC	2 cut(s)	675, 849
MbiI	CCGCTC	1 cut(s)	1079
MboI	GATC	2 cut(s)	673, 847
MboII	GAAGA	2 cut(s)	273, 701
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	3 cut(s)	200, 341, 543
MlyI	GAGTC	3 cut(s)	67, 311, 933
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	8 cut(s)	107, 176, 241, 432, 557, 606, 901, 1068
MseI	TTAA	5 cut(s)	239, 306, 495, 540, 618
MslI	CAYNNNNRTG	2 cut(s)	191, 384
MspA1I	CMGCKG	1 cut(s)	775
MspI	CCGG	3 cut(s)	332, 515, 1021
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	862
NcoI	CCATGG	2 cut(s)	360, 478
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	673, 847
NlaIV	GGNNCC	2 cut(s)	460, 461
NmuCI	GTSAC	2 cut(s)	85, 880
NspI	RCATGY	2 cut(s)	86, 1070
PaeI	GCATGC	1 cut(s)	1070
PagI	TCATGA	2 cut(s)	21, 466
PctI	GAATGC	1 cut(s)	391
PleI	GAGTC	3 cut(s)	67, 311, 933
PpsI	GAGTC	3 cut(s)	67, 311, 933
PpuMI	RGGWCCY	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	460, 461
PspPI	GGNCC	5 cut(s)	290, 419, 459, 512, 1074
PspPPI	RGGWCCY	1 cut(s)	459
PstI	CTGCAG	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	775
RsaI	GTAC	2 cut(s)	45, 531
RsaNI	GTAC	2 cut(s)	44, 530
RseI	CAYNNNNRTG	2 cut(s)	191, 384
Rsr2I	CGGWCCG	1 cut(s)	1074
RsrII	CGGWCCG	1 cut(s)	1074
SaqAI	TTAA	5 cut(s)	239, 306, 495, 540, 618
Sau3AI	GATC	2 cut(s)	673, 847
Sau96I	GGNCC	5 cut(s)	290, 419, 459, 512, 1074
SchI	GAGTC	3 cut(s)	67, 311, 933
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	505
SfaNI	GCATC	1 cut(s)	922
SfcI	CTRYAG	4 cut(s)	297, 549, 796, 1052
SinI	GGWCC	3 cut(s)	459, 512, 1074
SmiMI	CAYNNNNRTG	2 cut(s)	191, 384
SphI	GCATGC	1 cut(s)	1070
Sse9I	AATT	3 cut(s)	200, 341, 543
SsiI	CCGC	4 cut(s)	80, 860, 990, 1077
SspMI	CTAG	1 cut(s)	936
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	4 cut(s)	141, 360, 478, 960
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	2 cut(s)	76, 393
TaqII	GACCGA	1 cut(s)	1062
TasI	AATT	3 cut(s)	200, 341, 543
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	2 cut(s)	862, 992
Tru1I	TTAA	5 cut(s)	239, 306, 495, 540, 618
Tru9I	TTAA	5 cut(s)	239, 306, 495, 540, 618
TscAI	CASTG	3 cut(s)	198, 910, 929
TseFI	GTSAC	2 cut(s)	85, 880
Tsp45I	GTSAC	2 cut(s)	85, 880
TspDTI	ATGAA	6 cut(s)	213, 243, 455, 597, 701, 1023
TspGWI	ACGGA	2 cut(s)	47, 416
TspRI	CASTG	3 cut(s)	198, 910, 929
VpaK11BI	GGWCC	3 cut(s)	459, 512, 1074
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	2 cut(s)	86, 1070
XmiI	GTMKAC	1 cut(s)	795
XspI	CTAG	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.