Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

24509125 .. 24512641

Gene Structure 3517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGCTGCTTCAGTTGTTGTGTACAAGATGATACCAATACAGCTGCGGATCATGGACTATTTGTACCGCATGGCTCAGCAGGCAATGGCTACCATCCCAGAGAAGCTGCACAGAGGGATACTCAGATTGTTAATATACAACCCATTGCTGTTGCTGCCATTCCAGTAGATGAATTGAAAGATCTGACTGATAATTTTGGCACGAAGGCCTTAATTGGTGAGGGTTCATATGGAAGAGTATATTACGGTGTTCTTAAAAGTGGGCCTGCTGCTGCTATTAAAAAGCTGGATGCCAGTAAACAACCACACCAAGAATTTTTGTCACAGGTCTCCATGGTATCAAGACTAAAACATGAAAATGTTGTTGAGCTTGTTGGTTATTGTATTGATGGCCCTCTGCGTCTCCTTGCCTATGAGTATGCTCCTAATGGGTCCCTTCATGATATTCTTCATGGACGGAAAGGTGTCAAAGGGTCAGTTCCAGGTCCAGTTCTGTCATGGACACAAAGGGTTAAAATCGCGGTTGGAGCAGCAAGAGGACTTGAATATCTACATGAAAAGGCTCAGCCCCATATAATCCATCGTGATATTAAGTCCTGCAATATATTGCTTTTTGAAGATGACATTGCAAAGATTGCTGATTTTGATCTGTCAAATCAAGCCCCTGATATGGCAGCTCGTCTTCATTCCACTCGTGTTCTTGGGACATTTGGTTATCATGCTCCAGAGTATGCAATGACTGGACAGTTGAGTTCAAAAAGTGACGTCTACAGCTTTGGTGTTGTCTTGCTTGAACTCCTAACTGGCCGTAAACCTGTTGATCATACATTGCCACGTGGCCAACAGAGCCTTGTGACTTGGGCTACACCTAAACTGAGTGAGGACAAGGTGAAGCAGTGCGCTGATGCTAGACTCAATGGTGATTACCCTCCCAAGGCAGTTGCAAAGTTGGCTGCTGTTGCTGCCTTGTGCGTCCAATATGAAGCTGATTTTCGGCCAAACATGAGCATTGTGGTCAAGGCTCTACAGCCTCTATTGAATGCTCGGTCTGGTCCTGCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

355

Amino Acids

38.37

Weight (kDa)

7.67

Isoelectric Point (pI)

22.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	69 - 276	4.9e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	70 - 342	1e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	768
AccI	GTMKAC	1 cut(s)	768
AccII	CGCG	1 cut(s)	521
AciI	CCGC	3 cut(s)	47, 68, 521
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	3 cut(s)	805, 838, 995
AcsI	RAATTY	1 cut(s)	314
AcvI	CACGTG	1 cut(s)	836
AcyI	GRCGYC	1 cut(s)	765
AfaI	GTAC	2 cut(s)	24, 66
AfiI	CCNNNNNNNGG	2 cut(s)	670, 934
AgsI	TTSAA	6 cut(s)	178, 545, 617, 756, 794, 1039
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	7 cut(s)	44, 107, 286, 370, 677, 774, 986
AluI	AGCT	7 cut(s)	44, 107, 286, 370, 677, 774, 986
Alw26I	GTCTC	2 cut(s)	334, 407
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	6 cut(s)	207, 263, 391, 805, 838, 995
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	902
AspS9I	GGNCC	5 cut(s)	263, 392, 432, 485, 1052
AsuHPI	GGTGA	3 cut(s)	230, 901, 932
AvaII	GGWCC	3 cut(s)	432, 485, 1052
BalI	TGGCCA	1 cut(s)	840
BauI	CACGAG	1 cut(s)	693
BbrPI	CACGTG	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	674
BbvI	GCAGC	9 cut(s)	31, 94, 142, 256, 259, 542, 686, 940, 949
BccI	CCATC	3 cut(s)	102, 383, 588
BceAI	ACGGC	1 cut(s)	792
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	820
BcoDI	GTCTC	2 cut(s)	334, 407
BfaI	CTAG	1 cut(s)	909
BfmI	CTRYAG	2 cut(s)	769, 1025
BfuI	GTATCC	1 cut(s)	112
BglII	AGATCT	1 cut(s)	181
BlpI	GCTNAGC	2 cut(s)	76, 564
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	3 cut(s)	432, 485, 1052
BmgT120I	GGNCC	5 cut(s)	263, 392, 432, 485, 1052
BmiI	GGNNCC	2 cut(s)	433, 434
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	280, 895
BpiI	GAAGAC	1 cut(s)	674
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	708
Bpu1102I	GCTNAGC	2 cut(s)	76, 564
BsaAI	YACGTR	1 cut(s)	836
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	765
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	333, 933
Bsc4I	CCNNNNNNNGG	2 cut(s)	670, 934
Bse1I	ACTGG	5 cut(s)	164, 294, 488, 745, 808
Bse3DI	GCAATG	5 cut(s)	91, 144, 624, 741, 827
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	333, 933
BseGI	GGATG	2 cut(s)	94, 295
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	2 cut(s)	670, 934
BseMI	GCAATG	5 cut(s)	91, 144, 624, 741, 827
BseMII	CTCAG	4 cut(s)	90, 137, 578, 866
BseNI	ACTGG	5 cut(s)	164, 294, 488, 745, 808
BseXI	GCAGC	9 cut(s)	31, 94, 142, 256, 259, 542, 686, 940, 949
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	521
BshFI	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
BslFI	GGGAC	2 cut(s)	418, 718
BslI	CCNNNNNNNGG	2 cut(s)	670, 934
BsmAI	GTCTC	2 cut(s)	334, 407
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	2 cut(s)	418, 718
BsmI	GAATGC	1 cut(s)	1045
BsnI	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
Bso31I	GGTCTC	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	49, 181, 646, 820
Bsp1720I	GCTNAGC	2 cut(s)	76, 564
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	3 cut(s)	47, 68, 521
BspANI	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
BspCNI	CTCAG	4 cut(s)	89, 136, 577, 867
BspFNI	CGCG	1 cut(s)	521
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	433, 434
BspPI	GGATC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	334
BsrDI	GCAATG	5 cut(s)	91, 144, 624, 741, 827
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	5 cut(s)	164, 294, 488, 745, 808
BssECI	CCNNGG	2 cut(s)	333, 933
BssMI	GATC	4 cut(s)	49, 181, 646, 820
BssNI	GRCGYC	1 cut(s)	765
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	2 cut(s)	333, 933
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	248, 747
Bst6I	CTCTTC	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	765
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	836
BstC8I	GCNNGC	2 cut(s)	82, 267
BstDEI	CTNAG	4 cut(s)	76, 123, 564, 875
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	94, 295
BstFNI	CGCG	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	902
BstKTI	GATC	4 cut(s)	52, 184, 649, 823
BstMAI	GTCTC	2 cut(s)	334, 407
BstMBI	GATC	4 cut(s)	49, 181, 646, 820
BstMWI	GCNNNNNNNGC	8 cut(s)	81, 155, 527, 635, 846, 950, 959, 962
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	2 cut(s)	769, 1025
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	9 cut(s)	31, 94, 142, 256, 259, 542, 686, 940, 949
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	94, 295
BtsI	GCAGTG	1 cut(s)	902
BtsIMutI	CAGTG	1 cut(s)	902
Cac8I	GCNNGC	2 cut(s)	82, 267
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	902
Cfr13I	GGNCC	5 cut(s)	263, 392, 432, 485, 1052
CseI	GACGC	2 cut(s)	389, 961
Csp6I	GTAC	2 cut(s)	23, 65
CviQI	GTAC	2 cut(s)	23, 65
DdeI	CTNAG	4 cut(s)	76, 123, 564, 875
DpnI	GATC	4 cut(s)	51, 183, 648, 822
DpnII	GATC	4 cut(s)	49, 181, 646, 820
EaeI	YGGCCR	3 cut(s)	805, 838, 995
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	333, 933
Eco147I	AGGCCT	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	3 cut(s)	432, 485, 1052
Eco72I	CACGTG	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	333, 933
ErhI	CCWWGG	2 cut(s)	333, 933
Esp3I	CGTCTC	1 cut(s)	407
FaqI	GGGAC	2 cut(s)	418, 718
FauNDI	CATATG	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	768
FokI	GGATG	2 cut(s)	81, 302
FspBI	CTAG	1 cut(s)	909
GlaI	GCGC	1 cut(s)	901
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
HgaI	GACGC	2 cut(s)	389, 961
HhaI	GCGC	1 cut(s)	902
Hin1I	GRCGYC	1 cut(s)	765
Hin6I	GCGC	1 cut(s)	900
HinP1I	GCGC	1 cut(s)	900
HinfI	GANTC	1 cut(s)	912
HphI	GGTGA	3 cut(s)	230, 901, 932
Hpy166II	GTNNAC	4 cut(s)	23, 299, 769, 812
Hpy188I	TCNGA	2 cut(s)	126, 186
Hpy188III	TCNNGA	4 cut(s)	342, 440, 584, 725
Hpy8I	GTNNAC	4 cut(s)	23, 299, 769, 812
HpyAV	CCTTC	2 cut(s)	199, 446
HpyCH4III	ACNGT	2 cut(s)	248, 747
HpyCH4IV	ACGT	2 cut(s)	765, 835
HpyCH4V	TGCA	5 cut(s)	110, 600, 629, 734, 944
HpyF10VI	GCNNNNNNNGC	8 cut(s)	81, 155, 527, 635, 846, 950, 959, 962
HpyF3I	CTNAG	4 cut(s)	76, 123, 564, 875
HpySE526I	ACGT	2 cut(s)	765, 835
Hsp92I	GRCGYC	1 cut(s)	765
HspAI	GCGC	1 cut(s)	900
KflI	GGGWCCC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	4 cut(s)	49, 181, 646, 820
LmnI	GCTCC	3 cut(s)	427, 527, 727
Lsp1109I	GCAGC	9 cut(s)	31, 94, 142, 256, 259, 542, 686, 940, 949
LweI	GCATC	2 cut(s)	280, 895
MaeI	CTAG	1 cut(s)	909
MaeII	ACGT	2 cut(s)	765, 835
MaeIII	GTNAC	3 cut(s)	321, 761, 853
MalI	GATC	4 cut(s)	51, 183, 648, 822
MboI	GATC	4 cut(s)	49, 181, 646, 820
MboII	GAAGA	4 cut(s)	246, 440, 629, 674
MflI	RGATCY	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	840
MluCI	AATT	4 cut(s)	173, 193, 213, 314
MluNI	TGGCCA	1 cut(s)	840
MlyI	GAGTC	1 cut(s)	906
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	7 cut(s)	108, 214, 405, 530, 874, 939, 1041
Mox20I	TGGCCA	1 cut(s)	840
MscI	TGGCCA	1 cut(s)	840
MseI	TTAA	6 cut(s)	132, 212, 255, 279, 513, 591
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	840
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	1045
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	8 cut(s)	81, 155, 527, 635, 846, 950, 959, 962
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	4 cut(s)	49, 181, 646, 820
NlaIV	GGNNCC	2 cut(s)	433, 434
NmuCI	GTSAC	3 cut(s)	321, 761, 853
PagI	TCATGA	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	209
PctI	GAATGC	1 cut(s)	1045
PleI	GAGTC	1 cut(s)	906
PmaCI	CACGTG	1 cut(s)	836
PmlI	CACGTG	1 cut(s)	836
PpsI	GAGTC	1 cut(s)	906
Ppu21I	YACGTR	1 cut(s)	836
PpuMI	RGGWCCY	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	481
PspCI	CACGTG	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	433, 434
PspPI	GGNCC	5 cut(s)	263, 392, 432, 485, 1052
PspPPI	RGGWCCY	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	24, 66
RsaNI	GTAC	2 cut(s)	23, 65
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	6 cut(s)	132, 212, 255, 279, 513, 591
Sau3AI	GATC	4 cut(s)	49, 181, 646, 820
Sau96I	GGNCC	5 cut(s)	263, 392, 432, 485, 1052
SchI	GAGTC	1 cut(s)	906
ScrFI	CCNGG	1 cut(s)	483
SfaNI	GCATC	2 cut(s)	280, 895
SfcI	CTRYAG	2 cut(s)	769, 1025
SinI	GGWCC	3 cut(s)	432, 485, 1052
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	4 cut(s)	173, 193, 213, 314
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	3 cut(s)	47, 68, 521
SspMI	CTAG	1 cut(s)	909
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	2 cut(s)	333, 933
TaaI	ACNGT	2 cut(s)	248, 747
TaiI	ACGT	2 cut(s)	768, 838
TaqII	GACCGA	1 cut(s)	1035
TasI	AATT	4 cut(s)	173, 193, 213, 314
TatI	WGTACW	1 cut(s)	22
Tru1I	TTAA	6 cut(s)	132, 212, 255, 279, 513, 591
Tru9I	TTAA	6 cut(s)	132, 212, 255, 279, 513, 591
TscAI	CASTG	1 cut(s)	902
TseFI	GTSAC	3 cut(s)	321, 761, 853
Tsp45I	GTSAC	3 cut(s)	321, 761, 853
TspDTI	ATGAA	8 cut(s)	186, 216, 369, 428, 440, 570, 674, 996
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	1 cut(s)	902
VpaK11BI	GGWCC	3 cut(s)	432, 485, 1052
XapI	RAATTY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	1 cut(s)	909
ZraI	GACGTC	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.