AT3G17410
ERF Family

Protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004262
Physical Location & Seq
Forward (+)
5955862 .. 5959214
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17410.2

Sequence Viewer

Length: 1095 bp
ATGGGCTGCTTTGGTTGTTGTGGTGGTGGTGAGGATTTCCGTAGAGTTTCTGAAACTGGACCAAAGCCAGTGCATAACACTGGAGGTTACAATGGAGGTCACCATCAAAGGGCAGATCCACCCAAAAACCTTCCAGTCATTCAGATGCAGCCTATCTCTGTTGCGGCCATTCCAGCTGATGAATTGAGGGATATAACGGATAACTATGGTTCAAAGTCCTTGATTGGTGAGGGTTCATATGGAAGAGTCTTTTATGGTATTCTTAAAAGTGGTAAAGCAGCTGCCATTAAGAAACTGGATTCTAGTAAGCAACCAGATCAAGAATTTCTCGCCCAGGTATCAATGGTTTCGAGATTGCGACAAGAAAATGTTGTTGCGCTTCTGGGCTATTGTGTTGATGGCCCACTCCGTGTTCTTGCTTATGAATATGCTCCTAATGGATCTCTTCATGATATTCTTCATGGTCGAAAAGGTGTTAAAGGGGCACAGCCAGGTCCTGTTCTGTCGTGGCACCAGAGAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGTACTTGCATGAGAAGGCAAACCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTACTTCTGTTCGATGATGATGTTGCCAAGATTGCTGATTTTGATTTGTCCAACCAAGCCCCTGACATGGCTGCTCGCCTTCACTCAACCCGTGTGCTCGGAACCTTTGGCTATCACGCTCCAGAGTATGCAATGACGGGGACGTTGAGCACAAAGAGTGATGTCTATAGTTTTGGCGTTGTTCTGCTGGAGCTCCTCACAGGTCGTAAACCAGTTGATCATACCTTACCACGTGGACAGCAGAGTGTCGTGACATGGGCAACCCCTAAATTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACGCAAGACTAAACGGAGAATATCCTCCCAAAGCTGTTGCTAAGCTGGCTGCGGTAGCTGCACTGTGTGTGCAATATGAGGCAGACTTCAGGCCTAACATGAGCATAGTGGTGAAGGCTCTTCAGCCGTTGCTCAATCCTCCTCGTTCTGCTCCCCAGACTCCACACAGGAACCCGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

364

Amino Acids

39.56

Weight (kDa)

8.97

Isoelectric Point (pI)

26.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 71 - 279 1.2e-39 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 73 - 345 1.8e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 510
AciI CCGC 3 cut(s) 164, 539, 965
AclWI GGATC 2 cut(s) 110, 448
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 323
AcuI CTGAAG 2 cut(s) 985, 1019
AcvI CACGTG 1 cut(s) 845
AdeI CACNNNGTG 2 cut(s) 410, 980
AfaI GTAC 2 cut(s) 557, 615
AfiI CCNNNNNNNGG 2 cut(s) 109, 679
AgsI TTSAA 1 cut(s) 213
AjnI CCWGG 2 cut(s) 333, 490
AluBI AGCT 6 cut(s) 176, 281, 805, 947, 958, 971
AluI AGCT 6 cut(s) 176, 281, 805, 947, 958, 971
Alw21I GWGCWC 3 cut(s) 711, 764, 807
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 2 cut(s) 110, 448
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 3 cut(s) 165, 400, 1004
ApeKI GCWGC 7 cut(s) 6, 148, 278, 281, 683, 962, 971
ApoI RAATTY 1 cut(s) 323
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 3 cut(s) 59, 401, 494
AsuHPI GGTGA 5 cut(s) 41, 92, 239, 910, 1036
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 2 cut(s) 59, 494
BaeGI GKGCMC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 510
BanII GRGCYC 1 cut(s) 807
BbrPI CACGTG 1 cut(s) 845
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 3 cut(s) 711, 764, 807
BbvI GCAGC 6 cut(s) 160, 268, 290, 670, 949, 958
BccI CCATC 2 cut(s) 111, 392
BceAI ACGGC 1 cut(s) 1024
BciT130I CCWGG 2 cut(s) 335, 492
BclI TGATCA 1 cut(s) 829
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 2 cut(s) 303, 543
BfmI CTRYAG 1 cut(s) 778
BisI GCNGC 9 cut(s) 7, 149, 165, 279, 282, 540, 684, 963, 972
BlpI GCTNAGC 1 cut(s) 954
BlsI GCNGC 9 cut(s) 8, 150, 166, 280, 283, 541, 685, 964, 973
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 2 cut(s) 335, 492
Bme18I GGWCC 2 cut(s) 59, 494
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 3 cut(s) 59, 401, 494
BmiI GGNNCC 3 cut(s) 512, 715, 1085
BmrFI CCNGG 2 cut(s) 335, 492
BmsI GCATC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 897
BpmI CTGGAG 3 cut(s) 102, 717, 821
Bpu1102I GCTNAGC 1 cut(s) 954
BsaAI YACGTR 1 cut(s) 845
BsaJI CCNNGG 1 cut(s) 333
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 679
Bse1I ACTGG 6 cut(s) 61, 68, 85, 134, 300, 824
Bse3DI GCAATG 2 cut(s) 616, 750
BseBI CCWGG 2 cut(s) 335, 492
BseDI CCNNGG 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 109, 679
BseMI GCAATG 2 cut(s) 616, 750
BseNI ACTGG 6 cut(s) 61, 68, 85, 134, 300, 824
BseRI GAGGAG 2 cut(s) 797, 1044
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 6 cut(s) 160, 268, 290, 670, 949, 958
BsgI GTGCAG 1 cut(s) 957
BshFI GGCC 3 cut(s) 167, 402, 1006
BshNI GGYRCC 1 cut(s) 510
BsiHKAI GWGCWC 3 cut(s) 711, 764, 807
BsiHKCI CYCGRG 1 cut(s) 551
BslFI GGGAC 1 cut(s) 766
BslI CCNNNNNNNGG 2 cut(s) 109, 679
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 1 cut(s) 766
BsnI GGCC 3 cut(s) 167, 402, 1006
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 4 cut(s) 487, 711, 764, 807
Bsp143I GATC 4 cut(s) 115, 316, 440, 829
Bsp1720I GCTNAGC 1 cut(s) 954
BspACI CCGC 3 cut(s) 164, 539, 965
BspANI GGCC 3 cut(s) 167, 402, 1006
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 3 cut(s) 512, 715, 1085
BspPI GGATC 2 cut(s) 110, 448
BspQI GCTCTTC 1 cut(s) 1038
BspT107I GGYRCC 1 cut(s) 510
BsrDI GCAATG 2 cut(s) 616, 750
BsrI ACTGG 6 cut(s) 61, 68, 85, 134, 300, 824
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 4 cut(s) 115, 316, 440, 829
Bst2UI CCWGG 2 cut(s) 335, 492
Bst4CI ACNGT 1 cut(s) 978
Bst6I CTCTTC 3 cut(s) 238, 450, 1038
BstBAI YACGTR 1 cut(s) 845
BstC8I GCNNGC 2 cut(s) 688, 960
BstDEI CTNAG 1 cut(s) 954
BstEII GGTNACC 1 cut(s) 98
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 4 cut(s) 118, 319, 443, 832
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 4 cut(s) 115, 316, 440, 829
BstMWI GCNNNNNNNGC 6 cut(s) 173, 536, 644, 959, 968, 971
BstNI CCWGG 2 cut(s) 335, 492
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 333, 490
BstSFI CTRYAG 1 cut(s) 778
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 6 cut(s) 160, 268, 290, 670, 949, 958
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 2 cut(s) 115, 440
BstYI RGATCY 2 cut(s) 115, 440
BsuRI GGCC 3 cut(s) 167, 402, 1006
BtsI GCAGTG 1 cut(s) 911
BtsIMutI CAGTG 4 cut(s) 75, 78, 911, 974
Cac8I GCNNGC 2 cut(s) 688, 960
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 3 cut(s) 59, 401, 494
CseI GACGC 1 cut(s) 923
Csp6I GTAC 2 cut(s) 556, 614
CviAII CATG 7 cut(s) 449, 461, 563, 581, 679, 867, 1012
CviQI GTAC 2 cut(s) 556, 614
DdeI CTNAG 1 cut(s) 954
DpnI GATC 4 cut(s) 117, 318, 442, 831
DpnII GATC 4 cut(s) 115, 316, 440, 829
DraIII CACNNNGTG 2 cut(s) 410, 980
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 3 cut(s) 238, 450, 1038
EarI CTCTTC 3 cut(s) 238, 450, 1038
Ecl136II GAGCTC 1 cut(s) 805
Eco147I AGGCCT 1 cut(s) 1006
Eco24I GRGCYC 1 cut(s) 807
Eco47I GGWCC 2 cut(s) 59, 494
Eco53kI GAGCTC 1 cut(s) 805
Eco57I CTGAAG 2 cut(s) 985, 1019
Eco72I CACGTG 1 cut(s) 845
Eco88I CYCGRG 1 cut(s) 551
Eco91I GGTNACC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 494
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 333, 490
EcoT38I GRGCYC 1 cut(s) 807
FaeI CATG 7 cut(s) 452, 464, 566, 584, 682, 870, 1015
FaqI GGGAC 1 cut(s) 766
FatI CATG 7 cut(s) 448, 460, 562, 580, 678, 866, 1011
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 9 cut(s) 7, 149, 165, 279, 282, 540, 684, 963, 972
FriOI GRGCYC 1 cut(s) 807
Fsp4HI GCNGC 9 cut(s) 7, 149, 165, 279, 282, 540, 684, 963, 972
FspBI CTAG 2 cut(s) 303, 543
GlaI GCGC 1 cut(s) 378
GluI GCNGC 9 cut(s) 7, 149, 165, 279, 282, 540, 684, 963, 972
GsuI CTGGAG 3 cut(s) 102, 717, 821
HaeIII GGCC 3 cut(s) 167, 402, 1006
HgaI GACGC 1 cut(s) 923
HhaI GCGC 1 cut(s) 379
Hin1II CATG 7 cut(s) 452, 464, 566, 584, 682, 870, 1015
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HinfI GANTC 5 cut(s) 246, 299, 519, 549, 1072
HphI GGTGA 5 cut(s) 41, 92, 239, 910, 1036
Hpy166II GTNNAC 3 cut(s) 821, 848, 913
Hpy188I TCNGA 3 cut(s) 52, 144, 713
Hpy188III TCNNGA 5 cut(s) 320, 351, 449, 734, 862
Hpy8I GTNNAC 3 cut(s) 821, 848, 913
HpyAV CCTTC 4 cut(s) 140, 562, 701, 1021
HpyCH4III ACNGT 1 cut(s) 978
HpyCH4IV ACGT 2 cut(s) 755, 844
HpyCH4V TGCA 6 cut(s) 73, 148, 562, 743, 974, 985
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 536, 644, 959, 968, 971
HpyF3I CTNAG 1 cut(s) 954
HpySE526I ACGT 2 cut(s) 755, 844
Hsp92II CATG 7 cut(s) 452, 464, 566, 584, 682, 870, 1015
HspAI GCGC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 4 cut(s) 115, 316, 440, 829
LguI GCTCTTC 1 cut(s) 1038
LmnI GCTCC 5 cut(s) 436, 736, 802, 810, 1069
Lsp1109I GCAGC 6 cut(s) 160, 268, 290, 670, 949, 958
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 303, 543
MaeII ACGT 2 cut(s) 755, 844
MaeIII GTNAC 3 cut(s) 86, 98, 862
MalI GATC 4 cut(s) 117, 318, 442, 831
MboI GATC 4 cut(s) 115, 316, 440, 829
MboII GAAGA 5 cut(s) 255, 437, 449, 902, 1025
MflI RGATCY 2 cut(s) 115, 440
MhlI GDGCHC 4 cut(s) 487, 711, 764, 807
MluCI AATT 4 cut(s) 182, 323, 525, 881
MlyI GAGTC 4 cut(s) 255, 528, 543, 1066
MmeI TCCRAC 1 cut(s) 687
MseI TTAA 3 cut(s) 264, 288, 477
MslI CAYNNNNRTG 2 cut(s) 143, 1022
MspA1I CMGCKG 2 cut(s) 176, 281
MspR9I CCNGG 2 cut(s) 335, 492
MvaI CCWGG 2 cut(s) 335, 492
MwoI GCNNNNNNNGC 6 cut(s) 173, 536, 644, 959, 968, 971
NdeI CATATG 1 cut(s) 238
NdeII GATC 4 cut(s) 115, 316, 440, 829
NlaIII CATG 7 cut(s) 452, 464, 566, 584, 682, 870, 1015
NlaIV GGNNCC 3 cut(s) 512, 715, 1085
NmuCI GTSAC 2 cut(s) 98, 862
PaeR7I CTCGAG 1 cut(s) 551
PagI TCATGA 1 cut(s) 448
PceI AGGCCT 1 cut(s) 1006
PciSI GCTCTTC 1 cut(s) 1038
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 9 cut(s) 8, 150, 166, 280, 283, 541, 685, 964, 973
PleI GAGTC 4 cut(s) 254, 527, 543, 1066
PmaCI CACGTG 1 cut(s) 845
PmlI CACGTG 1 cut(s) 845
PpsI GAGTC 4 cut(s) 254, 527, 543, 1066
Ppu21I YACGTR 1 cut(s) 845
PpuMI RGGWCCY 1 cut(s) 494
Psp124BI GAGCTC 1 cut(s) 807
Psp5II RGGWCCY 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 333, 490
PspCI CACGTG 1 cut(s) 845
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 333, 490
PspN4I GGNNCC 3 cut(s) 512, 715, 1085
PspPI GGNCC 3 cut(s) 59, 401, 494
PspPPI RGGWCCY 1 cut(s) 494
PspXI VCTCGAGB 1 cut(s) 551
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 2 cut(s) 115, 440
PvuII CAGCTG 2 cut(s) 176, 281
RsaI GTAC 2 cut(s) 557, 615
RsaNI GTAC 2 cut(s) 556, 614
RseI CAYNNNNRTG 2 cut(s) 143, 1022
SacI GAGCTC 1 cut(s) 807
SapI GCTCTTC 1 cut(s) 1038
SaqAI TTAA 3 cut(s) 264, 288, 477
SatI GCNGC 9 cut(s) 7, 149, 165, 279, 282, 540, 684, 963, 972
Sau3AI GATC 4 cut(s) 115, 316, 440, 829
Sau96I GGNCC 3 cut(s) 59, 401, 494
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 4 cut(s) 255, 528, 543, 1066
ScrFI CCNGG 2 cut(s) 335, 492
SduI GDGCHC 4 cut(s) 487, 711, 764, 807
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 778
Sfr274I CTCGAG 1 cut(s) 551
SinI GGWCC 2 cut(s) 59, 494
SlaI CTCGAG 1 cut(s) 551
SmiMI CAYNNNNRTG 2 cut(s) 143, 1022
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 4 cut(s) 182, 323, 525, 881
SseBI AGGCCT 1 cut(s) 1006
SsiI CCGC 3 cut(s) 164, 539, 965
SspMI CTAG 2 cut(s) 303, 543
SstI GAGCTC 1 cut(s) 807
StuI AGGCCT 1 cut(s) 1006
StyD4I CCNGG 2 cut(s) 333, 490
TaaI ACNGT 1 cut(s) 978
TaiI ACGT 2 cut(s) 758, 847
TaqI TCGA 4 cut(s) 350, 466, 552, 624
TasI AATT 4 cut(s) 182, 323, 525, 881
TatI WGTACW 2 cut(s) 555, 613
TauI GCSGC 2 cut(s) 167, 542
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 3 cut(s) 264, 288, 477
Tru9I TTAA 3 cut(s) 264, 288, 477
TscAI CASTG 4 cut(s) 75, 85, 911, 981
TseFI GTSAC 2 cut(s) 98, 862
TseI GCWGC 7 cut(s) 6, 148, 278, 281, 683, 962, 971
Tsp45I GTSAC 2 cut(s) 98, 862
TspDTI ATGAA 5 cut(s) 195, 225, 437, 438, 449
TspGWI ACGGA 4 cut(s) 29, 212, 398, 942
TspRI CASTG 4 cut(s) 75, 85, 911, 981
VpaK11BI GGWCC 2 cut(s) 59, 494
XapI RAATTY 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 551
XspI CTAG 2 cut(s) 303, 543
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.