Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

11149502 .. 11165711

Gene Structure 16210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAAGGCAATTCGGAACATTCGAGTTGGTGGATCTCTCGATCTCAACTTTGGATTCACAAGTTCTACCGATGATGGTGGGTCCATTGATCTAAACTTTGGTTCCATTGGTTCCATCGGTGCCGATGGATCTATCGATCTAACTTTTGGGAGGAGGCTTTCTACTAGTAGTACTCTAAAGTGGCTTCGATTCATGATGTTCACGAAAGATGGCCTGGGTAACAATAAATTAGCAGTTAATTGTGCAGAAGTAGCTATTGTAACAATGCCAGCTACGTACACGCACAAGGAAAGATTGAAGAGTAGCTATGCATGCATGCCTAGGCTTTTGATAATTGTGCAGAAGTTCAATTGCTTATTAGATGAACATGAAGGAACCCAAATAAGGGGCTCGAGAGCTAAGTCAGAATCATTTGGTGGCTTTGGCCGGAGCAGGAATAATCAAAATCAAAGTTTTGGAGTTCAAACTGAGTTGGGTTTCATGACACAGGAAATGAGGGAAGTCATCATGCCCAAGGGTGGTCAAGCTGTAAAGGTCCAGCCTATTGAAATTCCGCTTATACCAGTAGAGGAGCTAAAGGAAATTACAGAGTGTATTGGAGATCTGAATTTCTCGGATGAAGGAAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

210

Amino Acids

23.08

Weight (kDa)

6.18

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	2 cut(s)	40, 136
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	2 cut(s)	549, 607
AfaI	GTAC	2 cut(s)	172, 278
AfiI	CCNNNNNNNGG	3 cut(s)	384, 385, 518
AgsI	TTSAA	4 cut(s)	298, 349, 464, 548
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	6 cut(s)	254, 272, 306, 398, 527, 574
AluI	AGCT	6 cut(s)	254, 272, 306, 398, 527, 574
AlwI	GGATC	2 cut(s)	40, 136
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	211, 424
ApoI	RAATTY	2 cut(s)	549, 607
AspA2I	CCTAGG	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	81, 535
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	2 cut(s)	81, 535
AvrII	CCTAGG	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	392
BccI	CCATC	4 cut(s)	68, 119, 122, 203
BciT130I	CCWGG	1 cut(s)	215
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	2 cut(s)	165, 321
BglII	AGATCT	1 cut(s)	601
BlnI	CCTAGG	1 cut(s)	320
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	2 cut(s)	81, 535
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	81, 535
BmiI	GGNNCC	5 cut(s)	82, 103, 112, 121, 376
BmrFI	CCNGG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	214, 320, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	384, 385, 518
Bse1I	ACTGG	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	214, 320, 513
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	3 cut(s)	384, 385, 518
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	2 cut(s)	166, 584
BsgI	GTGCAG	2 cut(s)	264, 359
BshFI	GGCC	2 cut(s)	213, 426
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	427
BslI	CCNNNNNNNGG	3 cut(s)	384, 385, 518
BsnI	GGCC	2 cut(s)	213, 426
BsoBI	CYCGRG	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	6 cut(s)	32, 40, 88, 128, 136, 601
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	2 cut(s)	213, 426
BspCNI	CTCAG	1 cut(s)	460
BspDI	ATCGAT	1 cut(s)	135
BspHI	TCATGA	2 cut(s)	192, 480
BspLI	GGNNCC	5 cut(s)	82, 103, 112, 121, 376
BspPI	GGATC	2 cut(s)	40, 136
BspT107I	GGYRCC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	3 cut(s)	214, 320, 513
BssMI	GATC	6 cut(s)	32, 40, 88, 128, 136, 601
BssT1I	CCWWGG	2 cut(s)	320, 513
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	270, 313, 317
BstDEI	CTNAG	2 cut(s)	399, 468
BstF5I	GGATG	1 cut(s)	622
BstKTI	GATC	6 cut(s)	35, 43, 91, 131, 139, 604
BstMBI	GATC	6 cut(s)	32, 40, 88, 128, 136, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 312
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	2 cut(s)	315, 319
BstSCI	CCNGG	1 cut(s)	213
BstSNI	TACGTA	1 cut(s)	276
BstX2I	RGATCY	3 cut(s)	32, 128, 601
BstYI	RGATCY	3 cut(s)	32, 128, 601
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	213, 426
BsuTUI	ATCGAT	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	622
Cac8I	GCNNGC	3 cut(s)	270, 313, 317
CciI	TCATGA	2 cut(s)	192, 480
Cfr13I	GGNCC	2 cut(s)	81, 535
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	171, 277
CviAII	CATG	6 cut(s)	193, 312, 316, 368, 481, 508
CviQI	GTAC	2 cut(s)	171, 277
DdeI	CTNAG	2 cut(s)	399, 468
DpnI	GATC	6 cut(s)	34, 42, 90, 130, 138, 603
DpnII	GATC	6 cut(s)	32, 40, 88, 128, 136, 601
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco105I	TACGTA	1 cut(s)	276
Eco130I	CCWWGG	2 cut(s)	320, 513
Eco24I	GRGCYC	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	81, 535
Eco88I	CYCGRG	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	320, 513
EcoT22I	ATGCAT	2 cut(s)	313, 317
EcoT38I	GRGCYC	1 cut(s)	392
ErhI	CCWWGG	2 cut(s)	320, 513
FaeI	CATG	6 cut(s)	196, 315, 319, 371, 484, 511
FaiI	YATR	8 cut(s)	194, 309, 313, 317, 369, 482, 509, 560
FatI	CATG	6 cut(s)	192, 311, 315, 367, 480, 507
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	392
FspBI	CTAG	2 cut(s)	165, 321
HaeIII	GGCC	2 cut(s)	213, 426
HapII	CCGG	1 cut(s)	427
Hin1II	CATG	6 cut(s)	196, 315, 319, 371, 484, 511
HinfI	GANTC	3 cut(s)	54, 189, 407
HpaII	CCGG	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	201, 279
Hpy188I	TCNGA	4 cut(s)	15, 406, 606, 616
Hpy188III	TCNNGA	5 cut(s)	38, 193, 202, 393, 481
Hpy8I	GTNNAC	2 cut(s)	201, 279
HpyAV	CCTTC	3 cut(s)	365, 614, 618
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	4 cut(s)	245, 311, 315, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 312
HpyF3I	CTNAG	2 cut(s)	399, 468
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	6 cut(s)	196, 315, 319, 371, 484, 511
Kzo9I	GATC	6 cut(s)	32, 40, 88, 128, 136, 601
LmnI	GCTCC	2 cut(s)	429, 571
LpnPI	CCDG	8 cut(s)	200, 227, 282, 418, 440, 473, 551, 576
MaeI	CTAG	2 cut(s)	165, 321
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	218, 259
MalI	GATC	6 cut(s)	34, 42, 90, 130, 138, 603
MboI	GATC	6 cut(s)	32, 40, 88, 128, 136, 601
MboII	GAAGA	1 cut(s)	310
MfeI	CAATTG	1 cut(s)	349
MflI	RGATCY	3 cut(s)	32, 128, 601
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	8 cut(s)	9, 227, 238, 333, 349, 549, 582, 607
MnlI	CCTC	4 cut(s)	144, 147, 489, 562
Mph1103I	ATGCAT	2 cut(s)	313, 317
MseI	TTAA	1 cut(s)	237
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	251, 312
NdeII	GATC	6 cut(s)	32, 40, 88, 128, 136, 601
NlaIII	CATG	6 cut(s)	196, 315, 319, 371, 484, 511
NlaIV	GGNNCC	5 cut(s)	82, 103, 112, 121, 376
NsiI	ATGCAT	2 cut(s)	313, 317
NspI	RCATGY	2 cut(s)	315, 319
PaeI	GCATGC	2 cut(s)	315, 319
PaeR7I	CTCGAG	1 cut(s)	391
PagI	TCATGA	2 cut(s)	192, 480
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	54, 189, 407
Ppu21I	YACGTR	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	5 cut(s)	82, 103, 112, 121, 376
PspPI	GGNCC	2 cut(s)	81, 535
PsuI	RGATCY	3 cut(s)	32, 128, 601
RsaI	GTAC	2 cut(s)	172, 278
RsaNI	GTAC	2 cut(s)	171, 277
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	6 cut(s)	32, 40, 88, 128, 136, 601
Sau96I	GGNCC	2 cut(s)	81, 535
ScaI	AGTACT	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	8 cut(s)	256, 274, 278, 308, 400, 529, 537, 576
Sfr274I	CTCGAG	1 cut(s)	391
SinI	GGWCC	2 cut(s)	81, 535
SlaI	CTCGAG	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
SnaBI	TACGTA	1 cut(s)	276
SpeI	ACTAGT	1 cut(s)	164
SphI	GCATGC	2 cut(s)	315, 319
Sse9I	AATT	8 cut(s)	9, 227, 238, 333, 349, 549, 582, 607
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	2 cut(s)	165, 321
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	2 cut(s)	320, 513
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	5 cut(s)	22, 39, 135, 187, 392
TasI	AATT	8 cut(s)	9, 227, 238, 333, 349, 549, 582, 607
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	3 cut(s)	54, 189, 407
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TspDTI	ATGAA	6 cut(s)	17, 181, 378, 384, 469, 633
VpaK11BI	GGWCC	2 cut(s)	81, 535
XapI	RAATTY	2 cut(s)	549, 607
XceI	RCATGY	2 cut(s)	315, 319
XhoI	CTCGAG	1 cut(s)	391
XmaJI	CCTAGG	1 cut(s)	320
XspI	CTAG	2 cut(s)	165, 321
ZrmI	AGTACT	1 cut(s)	172
Zsp2I	ATGCAT	2 cut(s)	313, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.