Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

45322080 .. 45324342

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG279100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGCTGCTTCAGTTGTTGTGTACAAGATGATACCGATACAGCTCCGGATCATGGACCATATGTACCACATGGCTCAGCAGGCAATGGCTACCATCCCAGAGAAGCTGCGCAGAGGGATACTCAGATTGTAAATATACAACCAATTGCTGTTGTTGCCATTCCAGTAGATGAATTGAAAGATCTGACTGATAATTTTGGCACAAAGGCCTTAATTGGTGAGGGTTCATATGGAAGAGTATATTATGGTGTTCTTAAGAGTGGGCCTGCTGCTGCTATTAAGAAGCTAGATGCCAGTAAACAACCACACCAAGAATTTTTGTCACAGGTCTCCATGGTTTCAAGACTAAAACATGAAAATGTCGTTGAGCTTGTTGGTTATTGTATTGATGGCCCTCTGCGTCTCCTTGCCTATGAGTATGCTCCTAATGGGTCTCTTCATGATATTCTTCATGGACGGAAAGGTGTCAAGGGGTCTGTTCCAGATGACGTTGCAAAGATTGCTGATTTTGATCTGTCAAATCAAGCCCCTGATATGGCAGCTCGTCTTCATTCCACTCGTGTTCTTGGGACATTTGGTTATCATGCTCCAGAGTATGCAATGACTGGACAGCTGAGTTCAAAAAGTGATGTCTACAGCTTTGGTGTTGTCTTGCTTGAACTCTTGACTGGCCGTAAGCCTGTTGATCATACATTGCCACGTGGCCAACAGAGCCTTGTGACTTGGGCTACACCTAAACTGAGTGAGGATAAGGTGAAGCAGTGCGCTGATGCTAGACTCAATGGCGACTACCCTCCCAAGGCAGTTGCAAAGTTGGCTGCTGTTGCTGCCTTGTGCGTCCAATATGAAGCTGATTTTCGGCCAAACATGAGCATTGTGGTCAAGGCTCTACAGCCTCTATTGAATGCTCGGTCTGGTCCTGCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

309

Amino Acids

33.32

Weight (kDa)

6.59

Isoelectric Point (pI)

19.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	69 - 154	7.8e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	70 - 153	4.7e-14	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	163 - 297	6.7e-16	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	163 - 231	2e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	633
AccIII	TCCGGA	1 cut(s)	46
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	3 cut(s)	670, 703, 860
AcsI	RAATTY	1 cut(s)	314
AcvI	CACGTG	1 cut(s)	701
AfaI	GTAC	2 cut(s)	24, 66
AfiI	CCNNNNNNNGG	3 cut(s)	53, 535, 799
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	178, 342, 621, 659, 904
AluBI	AGCT	8 cut(s)	44, 107, 286, 370, 542, 613, 639, 851
AluI	AGCT	8 cut(s)	44, 107, 286, 370, 542, 613, 639, 851
Alw26I	GTCTC	3 cut(s)	334, 407, 438
AlwI	GGATC	1 cut(s)	57
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	6 cut(s)	207, 263, 391, 670, 703, 860
ApeKI	GCWGC	7 cut(s)	6, 107, 269, 272, 539, 818, 827
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	112, 767
AspS9I	GGNCC	4 cut(s)	56, 263, 392, 917
AsuHPI	GGTGA	2 cut(s)	230, 766
AvaII	GGWCC	2 cut(s)	56, 917
BalI	TGGCCA	1 cut(s)	705
BauI	CACGAG	1 cut(s)	558
BbrPI	CACGTG	1 cut(s)	701
BbsI	GAAGAC	1 cut(s)	539
BbvI	GCAGC	6 cut(s)	94, 256, 259, 551, 805, 814
BccI	CCATC	2 cut(s)	102, 383
BceAI	ACGGC	1 cut(s)	657
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	685
BcoDI	GTCTC	3 cut(s)	334, 407, 438
BfaI	CTAG	2 cut(s)	287, 774
BfmI	CTRYAG	2 cut(s)	634, 890
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	112
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	7 cut(s)	7, 108, 270, 273, 540, 819, 828
BlpI	GCTNAGC	1 cut(s)	76
BlsI	GCNGC	7 cut(s)	8, 109, 271, 274, 541, 820, 829
Bme18I	GGWCC	2 cut(s)	56, 917
BmgT120I	GGNCC	4 cut(s)	56, 263, 392, 917
BmsI	GCATC	2 cut(s)	280, 760
BpiI	GAAGAC	1 cut(s)	539
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	701
BsaBI	GATNNNNATC	1 cut(s)	510
BsaI	GGTCTC	2 cut(s)	334, 438
BsaJI	CCNNGG	2 cut(s)	333, 798
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 535, 799
Bse1I	ACTGG	4 cut(s)	164, 294, 610, 673
Bse3DI	GCAATG	3 cut(s)	91, 606, 692
Bse8I	GATNNNNATC	1 cut(s)	510
BseAI	TCCGGA	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	333, 798
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	53, 535, 799
BseMI	GCAATG	3 cut(s)	91, 606, 692
BseMII	CTCAG	4 cut(s)	90, 137, 605, 731
BseNI	ACTGG	4 cut(s)	164, 294, 610, 673
BseXI	GCAGC	6 cut(s)	94, 256, 259, 551, 805, 814
BshFI	GGCC	6 cut(s)	209, 265, 393, 672, 705, 862
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	3 cut(s)	53, 535, 799
BsmAI	GTCTC	3 cut(s)	334, 407, 438
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	6 cut(s)	209, 265, 393, 672, 705, 862
Bso31I	GGTCTC	2 cut(s)	334, 438
Bsp13I	TCCGGA	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	49, 181, 511, 685
Bsp1720I	GCTNAGC	1 cut(s)	76
Bsp19I	CCATGG	1 cut(s)	333
BspANI	GGCC	6 cut(s)	209, 265, 393, 672, 705, 862
BspCNI	CTCAG	4 cut(s)	89, 136, 606, 732
BspEI	TCCGGA	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	439
BspPI	GGATC	1 cut(s)	57
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	2 cut(s)	334, 438
BsrDI	GCAATG	3 cut(s)	91, 606, 692
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	4 cut(s)	164, 294, 610, 673
BssECI	CCNNGG	2 cut(s)	333, 798
BssMI	GATC	4 cut(s)	49, 181, 511, 685
BssSI	CACGAG	1 cut(s)	558
BssT1I	CCWWGG	2 cut(s)	333, 798
Bst2BI	CACGAG	1 cut(s)	558
Bst6I	CTCTTC	2 cut(s)	229, 441
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	82, 267
BstDEI	CTNAG	4 cut(s)	76, 123, 614, 740
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	112, 767
BstKTI	GATC	4 cut(s)	52, 184, 514, 688
BstMAI	GTCTC	3 cut(s)	334, 407, 438
BstMBI	GATC	4 cut(s)	49, 181, 511, 685
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 155, 500, 711, 815, 824, 827
BstSFI	CTRYAG	2 cut(s)	634, 890
BstV1I	GCAGC	6 cut(s)	94, 256, 259, 551, 805, 814
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	6 cut(s)	209, 265, 393, 672, 705, 862
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	767
BtsIMutI	CAGTG	1 cut(s)	767
Cac8I	GCNNGC	2 cut(s)	82, 267
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	2 cut(s)	112, 767
Cfr13I	GGNCC	4 cut(s)	56, 263, 392, 917
CseI	GACGC	2 cut(s)	389, 826
Csp6I	GTAC	2 cut(s)	23, 65
CviAII	CATG	8 cut(s)	53, 71, 334, 353, 440, 452, 584, 868
CviQI	GTAC	2 cut(s)	23, 65
DdeI	CTNAG	4 cut(s)	76, 123, 614, 740
DpnI	GATC	4 cut(s)	51, 183, 513, 687
DpnII	GATC	4 cut(s)	49, 181, 511, 685
EaeI	YGGCCR	3 cut(s)	670, 703, 860
Eam1104I	CTCTTC	2 cut(s)	229, 441
EarI	CTCTTC	2 cut(s)	229, 441
Eco130I	CCWWGG	2 cut(s)	333, 798
Eco147I	AGGCCT	1 cut(s)	209
Eco31I	GGTCTC	2 cut(s)	334, 438
Eco47I	GGWCC	2 cut(s)	56, 917
Eco72I	CACGTG	1 cut(s)	701
EcoT14I	CCWWGG	2 cut(s)	333, 798
ErhI	CCWWGG	2 cut(s)	333, 798
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	8 cut(s)	56, 74, 337, 356, 443, 455, 587, 871
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	8 cut(s)	52, 70, 333, 352, 439, 451, 583, 867
FauNDI	CATATG	2 cut(s)	61, 229
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	7 cut(s)	7, 108, 270, 273, 540, 819, 828
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	7 cut(s)	7, 108, 270, 273, 540, 819, 828
FspBI	CTAG	2 cut(s)	287, 774
FspI	TGCGCA	1 cut(s)	111
GlaI	GCGC	2 cut(s)	111, 766
GluI	GCNGC	7 cut(s)	7, 108, 270, 273, 540, 819, 828
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	6 cut(s)	209, 265, 393, 672, 705, 862
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	2 cut(s)	389, 826
HhaI	GCGC	2 cut(s)	112, 767
Hin1II	CATG	8 cut(s)	56, 74, 337, 356, 443, 455, 587, 871
Hin6I	GCGC	2 cut(s)	110, 765
HinP1I	GCGC	2 cut(s)	110, 765
HinfI	GANTC	1 cut(s)	777
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	2 cut(s)	230, 766
Hpy166II	GTNNAC	3 cut(s)	23, 299, 634
Hpy188I	TCNGA	2 cut(s)	126, 186
Hpy188III	TCNNGA	6 cut(s)	47, 342, 440, 482, 590, 664
Hpy8I	GTNNAC	3 cut(s)	23, 299, 634
HpyCH4IV	ACGT	2 cut(s)	489, 700
HpyCH4V	TGCA	3 cut(s)	494, 599, 809
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 155, 500, 711, 815, 824, 827
HpyF3I	CTNAG	4 cut(s)	76, 123, 614, 740
HpySE526I	ACGT	2 cut(s)	489, 700
Hsp92II	CATG	8 cut(s)	56, 74, 337, 356, 443, 455, 587, 871
HspAI	GCGC	2 cut(s)	110, 765
Kpn2I	TCCGGA	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	4 cut(s)	49, 181, 511, 685
LmnI	GCTCC	3 cut(s)	49, 427, 592
Lsp1109I	GCAGC	6 cut(s)	94, 256, 259, 551, 805, 814
LweI	GCATC	2 cut(s)	280, 760
MaeI	CTAG	2 cut(s)	287, 774
MaeII	ACGT	2 cut(s)	489, 700
MaeIII	GTNAC	2 cut(s)	321, 718
MalI	GATC	4 cut(s)	51, 183, 513, 687
MboI	GATC	4 cut(s)	49, 181, 511, 685
MboII	GAAGA	4 cut(s)	246, 428, 440, 539
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	705
MluCI	AATT	5 cut(s)	144, 173, 193, 213, 314
MluNI	TGGCCA	1 cut(s)	705
MlyI	GAGTC	1 cut(s)	771
MnlI	CCTC	6 cut(s)	108, 214, 405, 739, 804, 906
Mox20I	TGGCCA	1 cut(s)	705
MroI	TCCGGA	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	705
MseI	TTAA	3 cut(s)	212, 255, 279
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	613
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	910
MwoI	GCNNNNNNNGC	7 cut(s)	81, 155, 500, 711, 815, 824, 827
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	2 cut(s)	61, 229
NdeII	GATC	4 cut(s)	49, 181, 511, 685
NlaIII	CATG	8 cut(s)	56, 74, 337, 356, 443, 455, 587, 871
NmuCI	GTSAC	2 cut(s)	321, 718
NsbI	TGCGCA	1 cut(s)	111
PagI	TCATGA	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	209
PctI	GAATGC	1 cut(s)	910
PkrI	GCNGC	7 cut(s)	8, 109, 271, 274, 541, 820, 829
PleI	GAGTC	1 cut(s)	771
PmaCI	CACGTG	1 cut(s)	701
PmlI	CACGTG	1 cut(s)	701
PpsI	GAGTC	1 cut(s)	771
Ppu21I	YACGTR	1 cut(s)	701
PspCI	CACGTG	1 cut(s)	701
PspPI	GGNCC	4 cut(s)	56, 263, 392, 917
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	2 cut(s)	24, 66
RsaNI	GTAC	2 cut(s)	23, 65
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	212, 255, 279
SatI	GCNGC	7 cut(s)	7, 108, 270, 273, 540, 819, 828
Sau3AI	GATC	4 cut(s)	49, 181, 511, 685
Sau96I	GGNCC	4 cut(s)	56, 263, 392, 917
SchI	GAGTC	1 cut(s)	771
SfaNI	GCATC	2 cut(s)	280, 760
SfcI	CTRYAG	2 cut(s)	634, 890
SinI	GGWCC	2 cut(s)	56, 917
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	144, 173, 193, 213, 314
SseBI	AGGCCT	1 cut(s)	209
SspMI	CTAG	2 cut(s)	287, 774
StuI	AGGCCT	1 cut(s)	209
StyI	CCWWGG	2 cut(s)	333, 798
TaiI	ACGT	2 cut(s)	492, 703
TaqII	GACCGA	1 cut(s)	900
TasI	AATT	5 cut(s)	144, 173, 193, 213, 314
TatI	WGTACW	1 cut(s)	22
Tru1I	TTAA	3 cut(s)	212, 255, 279
Tru9I	TTAA	3 cut(s)	212, 255, 279
TscAI	CASTG	1 cut(s)	767
TseFI	GTSAC	2 cut(s)	321, 718
TseI	GCWGC	7 cut(s)	6, 107, 269, 272, 539, 818, 827
Tsp45I	GTSAC	2 cut(s)	321, 718
TspDTI	ATGAA	7 cut(s)	186, 216, 369, 428, 440, 539, 861
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	1 cut(s)	767
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	56, 917
XapI	RAATTY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	633
XspI	CTAG	2 cut(s)	287, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.