Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

55587569 .. 55588139

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG369800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAGAGTCTATTTGAAGATGGTAGAGTTCAAATGGCAAGCCGCGTAATGAAGAGTATGGTAGAGAAGGGAGTGAATGAGAACATGGATTTAGTCGCCAAGGTTTTGGAAGCCCTCTTTATCAGAGGTCATGTTGAGGAAGCACTTGGACGGGTTGATCTACTTATGCAAAGTGGGTGTGCACCTGAGTTTGATAGCCTCTTATCTCTGCTTGCTGAAAAAGGAAAGACCATTGCAGCTGTTAAGCTATTAGATTTTTGCCTTGAGAGAGATTGCATGGTAGATTTTTCAAGCTATGATAAGGTGTTAGATGGTCTCTTAGCATCAGGAAAGACTCTAAATGCATACTCAATTTTGTGTAAAATAATGGAGAATGGAGGGGTTACTGAGTGGCATTGCACTGATGATCTGATCAAGAGCCTCAATCTAGACTCTAGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

147

Amino Acids

16.21

Weight (kDa)

4.74

Isoelectric Point (pI)

27.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	43
AgsI	TTSAA	3 cut(s)	17, 32, 291
AluBI	AGCT	3 cut(s)	239, 247, 294
AluI	AGCT	3 cut(s)	239, 247, 294
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	320
Alw44I	GTGCAC	1 cut(s)	180
ApaLI	GTGCAC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	2 cut(s)	14, 305
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	2 cut(s)	428, 435
BisI	GCNGC	2 cut(s)	43, 237
BlsI	GCNGC	2 cut(s)	44, 238
BmsI	GCATC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	99
Bse3DI	GCAATG	2 cut(s)	231, 394
BseDI	CCNNGG	1 cut(s)	99
BseMI	GCAATG	2 cut(s)	231, 394
BseMII	CTCAG	2 cut(s)	177, 378
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	157, 406, 411
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	178, 379
BspFNI	CGCG	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	231, 394
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	157, 406, 411
BssT1I	CCWWGG	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	40, 213
BstDEI	CTNAG	3 cut(s)	186, 319, 387
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	160, 409, 414
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	3 cut(s)	157, 406, 411
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	248
BstXI	CCANNNNNNTGG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	40, 213
CviAII	CATG	3 cut(s)	85, 131, 277
CviJI	RGCY	7 cut(s)	42, 113, 198, 239, 247, 294, 420
CviKI_1	RGCY	7 cut(s)	42, 113, 198, 239, 247, 294, 420
DdeI	CTNAG	3 cut(s)	186, 319, 387
DpnI	GATC	3 cut(s)	159, 408, 413
DpnII	GATC	3 cut(s)	157, 406, 411
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	3 cut(s)	88, 134, 280
FaiI	YATR	7 cut(s)	59, 86, 132, 167, 278, 297, 346
FatI	CATG	3 cut(s)	84, 130, 276
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	43, 237
Fsp4HI	GCNGC	2 cut(s)	43, 237
FspBI	CTAG	2 cut(s)	428, 435
GluI	GCNGC	2 cut(s)	43, 237
Hin1II	CATG	3 cut(s)	88, 134, 280
HinfI	GANTC	3 cut(s)	7, 334, 431
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	125, 411
Hpy188III	TCNNGA	4 cut(s)	327, 415, 428, 435
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	61
HpyCH4V	TGCA	6 cut(s)	169, 182, 236, 276, 344, 399
HpyF3I	CTNAG	3 cut(s)	186, 319, 387
Hsp92II	CATG	3 cut(s)	88, 134, 280
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	157, 406, 411
LpnPI	CCDG	2 cut(s)	198, 312
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	332
MaeI	CTAG	2 cut(s)	428, 435
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	3 cut(s)	159, 408, 413
MboI	GATC	3 cut(s)	157, 406, 411
MboII	GAAGA	2 cut(s)	29, 64
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	3 cut(s)	16, 328, 425
MnlI	CCTC	7 cut(s)	119, 125, 130, 209, 371, 431, 431
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	45
NdeII	GATC	3 cut(s)	157, 406, 411
NlaIII	CATG	3 cut(s)	88, 134, 280
NsiI	ATGCAT	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	44, 238
PleI	GAGTC	3 cut(s)	15, 328, 425
PpsI	GAGTC	3 cut(s)	15, 328, 425
PvuII	CAGCTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	43, 237
Sau3AI	GATC	3 cut(s)	157, 406, 411
SchI	GAGTC	3 cut(s)	16, 328, 425
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	7 cut(s)	105, 130, 187, 241, 249, 296, 306
SfaNI	GCATC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	428, 435
StyI	CCWWGG	1 cut(s)	99
TasI	AATT	1 cut(s)	351
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	406
VneI	GTGCAC	1 cut(s)	180
XbaI	TCTAGA	2 cut(s)	427, 434
XspI	CTAG	2 cut(s)	428, 435
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.