Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

17802863 .. 17804955

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAGCTGTTTTGGCTGGTGTGGGAGTGAGGATGTTCGTAATCCTGCTGACACCGGACCAAGTCAAGCACATAACTCAATAGGTTACAATGGACGCCACCATCAAAGAGCTGATCCACCAATGAACCAACCAGTAGTTAACATGCAGCCTATCGCTGTACCAGCCATTCCAGTGGATGAACTGGAAGATATAACCGAGAACTTTAGTTCAGAGGTATTAGTCGGTAAAGGTTCATATGGAAGAGTGTTTTACGGTGTTCTTAAAAGCGGTAAAGAAGCTGCCATCAAGAAACTTTACCCTACTAAGCAGCCAGATCAAGAATTTCTTTCCCAGGTATCAATGGTTTCAAGACTGCACCACGAAAATGTTGTAGCACTTATGGCCTATTGTGTTGATGGCCCTCTCCGTGTTCTTGCTTATGAATTTGCCACTTATGGAACTCTTCATGATGTTCTTCACGGTCAAACAGGTGTCATAGGAGCACTACAAGGTCCTGTTATGACGTGGCAACGAAGAGTCAAAATAGCTCTTGGTGCAGCCAGAGGACTTGAGTACTTGCATAAGAAGGTGAACCCTCAGGTTATCCACCGAGATATCAAAGCTAGCAACATACTTCTGTTTGATGATGATATTGCCAAAATTGGTGATTTTGATTTGTATGATCAAGCCCCTAACATGGCTGGTCGCCTTCACTCATGTCGTATGGCACTAGGAGCATCTCGTTCTCACTGTCCAGAACATGCAATGACAGGAATATTGACCACAAAGAGCGATGTCTACAGTTTTGGCGTTGTTCTGTTGGAGCTCCTTACGGGTCGTAAACCAGTAGATCGTACCTTACCGCGTGGACAACAAAATTTAGTGACATGGGCAACCCCTAAACTAAGCAAAGACAAAGTGAAGCAATGCGTTGATGCAAGACTACTTGGAGAGTACCCTCCCAAAGCTGTTGCCAAGCTAGCTGCGGTGTCTGCACGCTGTGTGCATTATGATCCAGATTTTAGACCAGACATGAGCATTGTGGTGAAGGCACTTCAACCTCTTTTAAACTCTTCTCGTTCCTCTCCTCAGACTCCACATTGGAATCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

364

Amino Acids

40.17

Weight (kDa)

8.72

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 339	8.2e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	73 - 345	4.3e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	777
AccII	CGCG	1 cut(s)	844
AciI	CCGC	3 cut(s)	267, 842, 965
AclWI	GGATC	2 cut(s)	107, 986
AcsI	RAATTY	3 cut(s)	320, 422, 856
AcyI	GRCGYC	1 cut(s)	94
AdeI	CACNNNGTG	1 cut(s)	980
AfaI	GTAC	4 cut(s)	159, 554, 835, 935
AfiI	CCNNNNNNNGG	1 cut(s)	676
AgsI	TTSAA	2 cut(s)	348, 1037
AjiI	CACGTC	1 cut(s)	504
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	9 cut(s)	6, 110, 278, 527, 602, 805, 947, 958, 962
AluI	AGCT	9 cut(s)	6, 110, 278, 527, 602, 805, 947, 958, 962
Alw21I	GWGCWC	2 cut(s)	484, 807
AlwI	GGATC	2 cut(s)	107, 986
AoxI	GGCC	2 cut(s)	381, 397
ApeKI	GCWGC	5 cut(s)	145, 278, 307, 536, 962
ApoI	RAATTY	3 cut(s)	320, 422, 856
AspS9I	GGNCC	3 cut(s)	56, 398, 491
AsuHPI	GGTGA	3 cut(s)	580, 656, 1036
AsuNHI	GCTAGC	2 cut(s)	602, 958
AvaII	GGWCC	2 cut(s)	56, 491
AxyI	CCTNAGG	1 cut(s)	576
BanII	GRGCYC	1 cut(s)	807
Bbv12I	GWGCWC	2 cut(s)	484, 807
BbvI	GCAGC	5 cut(s)	157, 265, 319, 548, 949
BccI	CCATC	3 cut(s)	108, 290, 389
BciT130I	CCWGG	1 cut(s)	332
BclI	TGATCA	1 cut(s)	661
BfaI	CTAG	3 cut(s)	603, 710, 959
BfmI	CTRYAG	1 cut(s)	778
BisI	GCNGC	5 cut(s)	146, 279, 308, 537, 963
BlsI	GCNGC	5 cut(s)	147, 280, 309, 538, 964
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	2 cut(s)	56, 491
BmgBI	CACGTC	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	56, 398, 491
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	725, 904
BmtI	GCTAGC	2 cut(s)	606, 962
BpuEI	CTTGAG	1 cut(s)	569
BsaHI	GRCGYC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse1I	ACTGG	4 cut(s)	131, 170, 186, 824
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	2 cut(s)	750, 911
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	37, 181
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	2 cut(s)	750, 911
BseMII	CTCAG	2 cut(s)	590, 1082
BseNI	ACTGG	4 cut(s)	131, 170, 186, 824
BseRI	GAGGAG	1 cut(s)	1056
BseXI	GCAGC	5 cut(s)	157, 265, 319, 548, 949
BsgI	GTGCAG	3 cut(s)	338, 555, 957
Bsh1236I	CGCG	1 cut(s)	844
BshFI	GGCC	2 cut(s)	383, 399
BsiHKAI	GWGCWC	2 cut(s)	484, 807
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	676
BsnI	GGCC	2 cut(s)	383, 399
Bsp1286I	GDGCHC	2 cut(s)	484, 807
Bsp143I	GATC	5 cut(s)	112, 313, 661, 829, 991
BspACI	CCGC	3 cut(s)	267, 842, 965
BspANI	GGCC	2 cut(s)	383, 399
BspCNI	CTCAG	2 cut(s)	589, 1081
BspFNI	CGCG	1 cut(s)	844
BspHI	TCATGA	1 cut(s)	445
BspOI	GCTAGC	2 cut(s)	606, 962
BspPI	GGATC	2 cut(s)	107, 986
BsrDI	GCAATG	2 cut(s)	750, 911
BsrI	ACTGG	4 cut(s)	131, 170, 186, 824
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	5 cut(s)	112, 313, 661, 829, 991
BssNI	GRCGYC	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	4 cut(s)	254, 461, 731, 782
Bst6I	CTCTTC	4 cut(s)	235, 447, 508, 1057
BstACI	GRCGYC	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	604, 960, 976
BstDEI	CTNAG	4 cut(s)	303, 576, 884, 1068
BstF5I	GGATG	2 cut(s)	37, 181
BstFNI	CGCG	1 cut(s)	844
BstKTI	GATC	5 cut(s)	115, 316, 664, 832, 994
BstMBI	GATC	5 cut(s)	112, 313, 661, 829, 991
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 161, 380, 533, 713, 959, 971
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	2 cut(s)	145, 743
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	778
BstUI	CGCG	1 cut(s)	844
BstV1I	GCAGC	5 cut(s)	157, 265, 319, 548, 949
BstXI	CCANNNNNNTGG	1 cut(s)	172
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	383, 399
BtgZI	GCGATG	1 cut(s)	786
BtrI	CACGTC	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	37, 181
BtsIMutI	CAGTG	2 cut(s)	177, 727
Cac8I	GCNNGC	3 cut(s)	604, 960, 976
CciI	TCATGA	1 cut(s)	445
Cfr13I	GGNCC	3 cut(s)	56, 398, 491
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	4 cut(s)	158, 553, 834, 934
CviAII	CATG	7 cut(s)	142, 446, 676, 696, 740, 867, 1012
CviQI	GTAC	4 cut(s)	158, 553, 834, 934
DdeI	CTNAG	4 cut(s)	303, 576, 884, 1068
DpnI	GATC	5 cut(s)	114, 315, 663, 831, 993
DpnII	GATC	5 cut(s)	112, 313, 661, 829, 991
DraI	TTTAAA	1 cut(s)	1047
DraIII	CACNNNGTG	1 cut(s)	980
Eam1104I	CTCTTC	4 cut(s)	235, 447, 508, 1057
EarI	CTCTTC	4 cut(s)	235, 447, 508, 1057
Ecl136II	GAGCTC	1 cut(s)	805
Eco24I	GRGCYC	1 cut(s)	807
Eco32I	GATATC	1 cut(s)	595
Eco47I	GGWCC	2 cut(s)	56, 491
Eco53kI	GAGCTC	1 cut(s)	805
Eco81I	CCTNAGG	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	330
EcoRV	GATATC	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	807
FaeI	CATG	7 cut(s)	145, 449, 679, 699, 743, 870, 1015
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	7 cut(s)	141, 445, 675, 695, 739, 866, 1011
FauNDI	CATATG	1 cut(s)	235
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	5 cut(s)	146, 279, 308, 537, 963
FokI	GGATG	2 cut(s)	44, 188
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	5 cut(s)	146, 279, 308, 537, 963
FspBI	CTAG	3 cut(s)	603, 710, 959
GluI	GCNGC	5 cut(s)	146, 279, 308, 537, 963
HaeIII	GGCC	2 cut(s)	383, 399
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	7 cut(s)	145, 449, 679, 699, 743, 870, 1015
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	3 cut(s)	516, 1072, 1084
HpaI	GTTAAC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	580, 656, 1036
Hpy166II	GTNNAC	5 cut(s)	139, 571, 778, 821, 848
Hpy188I	TCNGA	2 cut(s)	211, 1071
Hpy188III	TCNNGA	6 cut(s)	286, 317, 348, 446, 734, 995
Hpy8I	GTNNAC	5 cut(s)	139, 571, 778, 821, 848
HpyAV	CCTTC	3 cut(s)	559, 698, 1021
HpyCH4III	ACNGT	4 cut(s)	254, 461, 731, 782
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	8 cut(s)	145, 355, 536, 559, 743, 917, 974, 985
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 161, 380, 533, 713, 959, 971
HpyF3I	CTNAG	4 cut(s)	303, 576, 884, 1068
HpySE526I	ACGT	1 cut(s)	503
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	7 cut(s)	145, 449, 679, 699, 743, 870, 1015
Ksp22I	TGATCA	1 cut(s)	661
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	112, 313, 661, 829, 991
LmnI	GCTCC	4 cut(s)	479, 713, 802, 810
Lsp1109I	GCAGC	5 cut(s)	157, 265, 319, 548, 949
LweI	GCATC	2 cut(s)	725, 904
MaeI	CTAG	3 cut(s)	603, 710, 959
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	2 cut(s)	83, 862
MalI	GATC	5 cut(s)	114, 315, 663, 831, 993
MboI	GATC	5 cut(s)	112, 313, 661, 829, 991
MboII	GAAGA	6 cut(s)	197, 252, 434, 446, 525, 1044
MhlI	GDGCHC	2 cut(s)	484, 807
MluCI	AATT	4 cut(s)	320, 422, 639, 856
MlyI	GAGTC	2 cut(s)	525, 1066
MmeI	TCCRAC	1 cut(s)	780
MnlI	CCTC	9 cut(s)	22, 205, 411, 536, 585, 948, 1050, 1072, 1077
MseI	TTAA	3 cut(s)	138, 261, 1046
MslI	CAYNNNNRTG	3 cut(s)	170, 363, 1022
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	844
MwoI	GCNNNNNNNGC	7 cut(s)	12, 161, 380, 533, 713, 959, 971
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	5 cut(s)	112, 313, 661, 829, 991
NheI	GCTAGC	2 cut(s)	602, 958
NlaIII	CATG	7 cut(s)	145, 449, 679, 699, 743, 870, 1015
NmuCI	GTSAC	1 cut(s)	862
NspI	RCATGY	2 cut(s)	145, 743
PagI	TCATGA	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	1084
PflFI	GACNNNGTC	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	147, 280, 309, 538, 964
PleI	GAGTC	2 cut(s)	524, 1066
PpsI	GAGTC	2 cut(s)	524, 1066
PpuMI	RGGWCCY	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspPI	GGNCC	3 cut(s)	56, 398, 491
PspPPI	RGGWCCY	1 cut(s)	491
PsyI	GACNNNGTC	1 cut(s)	60
RsaI	GTAC	4 cut(s)	159, 554, 835, 935
RsaNI	GTAC	4 cut(s)	158, 553, 834, 934
RseI	CAYNNNNRTG	3 cut(s)	170, 363, 1022
SacI	GAGCTC	1 cut(s)	807
SaqAI	TTAA	3 cut(s)	138, 261, 1046
SatI	GCNGC	5 cut(s)	146, 279, 308, 537, 963
Sau3AI	GATC	5 cut(s)	112, 313, 661, 829, 991
Sau96I	GGNCC	3 cut(s)	56, 398, 491
ScaI	AGTACT	1 cut(s)	554
SchI	GAGTC	2 cut(s)	525, 1066
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	2 cut(s)	484, 807
SfaNI	GCATC	2 cut(s)	725, 904
SfcI	CTRYAG	1 cut(s)	778
SinI	GGWCC	2 cut(s)	56, 491
SmiMI	CAYNNNNRTG	3 cut(s)	170, 363, 1022
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	4 cut(s)	320, 422, 639, 856
SsiI	CCGC	3 cut(s)	267, 842, 965
SspI	AATATT	1 cut(s)	756
SspMI	CTAG	3 cut(s)	603, 710, 959
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	4 cut(s)	254, 461, 731, 782
TaiI	ACGT	1 cut(s)	506
TasI	AATT	4 cut(s)	320, 422, 639, 856
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	1084
Tru1I	TTAA	3 cut(s)	138, 261, 1046
Tru9I	TTAA	3 cut(s)	138, 261, 1046
TscAI	CASTG	2 cut(s)	177, 734
TseFI	GTSAC	1 cut(s)	862
TseI	GCWGC	5 cut(s)	145, 278, 307, 536, 962
Tsp45I	GTSAC	1 cut(s)	862
TspDTI	ATGAA	5 cut(s)	137, 192, 222, 434, 435
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	177, 734
Tth111I	GACNNNGTC	1 cut(s)	60
VpaK11BI	GGWCC	2 cut(s)	56, 491
XapI	RAATTY	3 cut(s)	320, 422, 856
XceI	RCATGY	2 cut(s)	145, 743
XmiI	GTMKAC	1 cut(s)	777
XspI	CTAG	3 cut(s)	603, 710, 959
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.