Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Reverse (-)

10492527 .. 10495882

Gene Structure 3356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1137300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAGCTGCTTCAGTTGTTGTGTAGAAGATGACACCCGTAGAGCTTCTGAGAATGGACCATATGTAACAAATCACTCAGCAGGCAATAGTGGAGGTTACTATCACGAAGAAGCTGCACCCGTGGATACACAGACTGTAAATATCCTTCCCATTGCTGTCGCTGCCATTCCAGTGGATGAATTGAAAGATTTGACAGATAACTTTGGCACAAAATCTTTAATCGGTGAGGGTTCATATGGAAGAGTATATCATGGTGTTCTGAAAAGTGGGCCTGCTGCAGCTATTAAGAAGTTAGATTCCAGTAAACAACTGGAGCGAGAATTCTTATCGCAGGTCTCCATGGTTTCAAGACTAAAACATGAAAATGTTGTGGAGCTTGTTGGTTATTGTGTTGATGGCCCTCTCCGTCTCCTTGCCTATGAGTATGCTCCTAATGGGTCTCTTCATGATATTATCCACGGACGGAAAGGTGTTAAGGGAGCACAGCCAGGACCGGTTTTGTCATGGGTACAAAGGGTTAAAATTGCTGTAGGAGCAGCCAGAGGACTTGAATATCTACATGAAAAGGCTCGGCCTCATATAGTCCATCGTGATATTAAGTCCTGCAATATACTGCTTTTTGATGATGATGTTGCAAAGATTGCTGATTTTGATCTGTCAAATCAAGCACCTGATATGGCAGCACGTCTTCATTCTACTCGTGTTCTTGGGACTTTTGGTTATCATGCTCCAGAATATGCAATGACCGGAGAGCTGAGTTCAAAAAGTGATGTTTACAGCTTTGGTGTAGTGTTGCTTGAACTCTTGACTGGGCGTAAACCTGTTGATCACACATTGCCGCGTGGGCAGCAGAGCCTTGTGACATGGGCAACACCTAAACTCAGTGAGGATAAGGTGAAGCAGTGTGTTGATGCTAGACTCAATGGAGAATACCCTTCCAAGGCAGTTGCAAAGTTTGCTGCTGTTGCCGCTTTGTGCGTCCAATATGAAGCTAATTTCCGGCCAAATATGAGCATTGTTGTCAACGCTCTACAACCTCTATTGCGTGCTCGGTCCGCTCCCCGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

357

Amino Acids

38.85

Weight (kDa)

7.66

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 282	1e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	71 - 344	2.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AccBSI	CCGCTC	1 cut(s)	1058
AccII	CGCG	1 cut(s)	841
AciI	CCGC	4 cut(s)	839, 969, 1056, 1063
AcoI	YGGCCR	1 cut(s)	1001
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	1 cut(s)	940
AgeI	ACCGGT	1 cut(s)	493
AgsI	TTSAA	5 cut(s)	184, 348, 551, 762, 800
AjiI	CACGTC	1 cut(s)	686
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	8 cut(s)	6, 44, 113, 281, 376, 754, 780, 992
AluI	AGCT	8 cut(s)	6, 44, 113, 281, 376, 754, 780, 992
Alw21I	GWGCWC	2 cut(s)	484, 1051
Alw26I	GTCTC	3 cut(s)	340, 413, 444
AoxI	GGCC	4 cut(s)	269, 397, 572, 1001
ApeKI	GCWGC	9 cut(s)	6, 113, 161, 275, 278, 536, 680, 847, 959
ApoI	RAATTY	1 cut(s)	320
AsiGI	ACCGGT	1 cut(s)	493
AspS9I	GGNCC	5 cut(s)	56, 269, 398, 491, 1053
AsuHPI	GGTGA	2 cut(s)	236, 907
AvaII	GGWCC	3 cut(s)	56, 491, 1053
BarI	GAAGNNNNNNTAC	2 cut(s)	129, 161
BauI	CACGAG	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	2 cut(s)	484, 1051
BbvI	GCAGC	8 cut(s)	100, 148, 262, 290, 548, 692, 859, 946
BccI	CCATC	2 cut(s)	389, 594
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	1 cut(s)	118
BclI	TGATCA	1 cut(s)	826
BcoDI	GTCTC	3 cut(s)	340, 413, 444
BfaI	CTAG	1 cut(s)	915
BfmI	CTRYAG	2 cut(s)	276, 528
BfuAI	ACCTGC	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	844
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	3 cut(s)	56, 491, 1053
BmgBI	CACGTC	1 cut(s)	686
BmgT120I	GGNCC	5 cut(s)	56, 269, 398, 491, 1053
BmrFI	CCNGG	1 cut(s)	489
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	1 cut(s)	901
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	2 cut(s)	332, 714
BsaBI	GATNNNNATC	1 cut(s)	651
BsaI	GGTCTC	2 cut(s)	340, 444
BsaJI	CCNNGG	4 cut(s)	120, 339, 457, 939
BsaWI	WCCGGW	2 cut(s)	493, 746
Bsc4I	CCNNNNNNNGG	1 cut(s)	940
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	4 cut(s)	170, 300, 315, 814
Bse3DI	GCAATG	3 cut(s)	150, 747, 833
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	4 cut(s)	120, 339, 457, 939
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	940
BseMI	GCAATG	3 cut(s)	150, 747, 833
BseMII	CTCAG	4 cut(s)	39, 90, 746, 895
BseNI	ACTGG	4 cut(s)	170, 300, 315, 814
BseXI	GCAGC	8 cut(s)	100, 148, 262, 290, 548, 692, 859, 946
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	841
BshFI	GGCC	4 cut(s)	271, 399, 574, 1003
BshTI	ACCGGT	1 cut(s)	493
BsiHKAI	GWGCWC	2 cut(s)	484, 1051
BsiSI	CCGG	3 cut(s)	494, 747, 1000
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	1 cut(s)	940
BsmAI	GTCTC	3 cut(s)	340, 413, 444
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	724
BsnI	GGCC	4 cut(s)	271, 399, 574, 1003
Bso31I	GGTCTC	2 cut(s)	340, 444
Bsp1286I	GDGCHC	2 cut(s)	484, 1051
Bsp143I	GATC	2 cut(s)	652, 826
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	4 cut(s)	839, 969, 1056, 1063
BspANI	GGCC	4 cut(s)	271, 399, 574, 1003
BspCNI	CTCAG	4 cut(s)	40, 89, 747, 894
BspFNI	CGCG	1 cut(s)	841
BspHI	TCATGA	1 cut(s)	445
BspMAI	CTGCAG	1 cut(s)	280
BspMI	ACCTGC	1 cut(s)	322
BspTNI	GGTCTC	2 cut(s)	340, 444
BsrBI	CCGCTC	1 cut(s)	1058
BsrDI	GCAATG	3 cut(s)	150, 747, 833
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	4 cut(s)	170, 300, 315, 814
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	4 cut(s)	120, 339, 457, 939
BssMI	GATC	2 cut(s)	652, 826
BssSI	CACGAG	1 cut(s)	699
BssT1I	CCWWGG	2 cut(s)	339, 939
Bst2BI	CACGAG	1 cut(s)	699
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	235, 447
BstAPI	GCANNNNNTGC	2 cut(s)	641, 956
BstC8I	GCNNGC	3 cut(s)	82, 273, 1047
BstDEI	CTNAG	4 cut(s)	48, 76, 755, 881
BstDSI	CCRYGG	3 cut(s)	120, 339, 457
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	841
BstKTI	GATC	2 cut(s)	655, 829
BstMAI	GTCTC	3 cut(s)	340, 413, 444
BstMBI	GATC	2 cut(s)	652, 826
BstMWI	GCNNNNNNNGC	9 cut(s)	161, 533, 641, 844, 847, 956, 965, 968, 1055
BstNI	CCWGG	1 cut(s)	489
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	2 cut(s)	276, 528
BstUI	CGCG	1 cut(s)	841
BstV1I	GCAGC	8 cut(s)	100, 148, 262, 290, 548, 692, 859, 946
BstV2I	GAAGAC	1 cut(s)	680
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	4 cut(s)	271, 399, 574, 1003
BtgI	CCRYGG	3 cut(s)	120, 339, 457
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	908
BtsIMutI	CAGTG	3 cut(s)	177, 889, 908
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	3 cut(s)	82, 273, 1047
CciI	TCATGA	1 cut(s)	445
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	5 cut(s)	56, 269, 398, 491, 1053
CpoI	CGGWCCG	1 cut(s)	1053
CseI	GACGC	1 cut(s)	967
Csp6I	GTAC	1 cut(s)	509
CspAI	ACCGGT	1 cut(s)	493
CspI	CGGWCCG	1 cut(s)	1053
CviAII	CATG	8 cut(s)	251, 340, 359, 446, 504, 560, 725, 864
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	4 cut(s)	48, 76, 755, 881
DpnI	GATC	2 cut(s)	654, 828
DpnII	GATC	2 cut(s)	652, 826
EaeI	YGGCCR	1 cut(s)	1001
Eam1104I	CTCTTC	2 cut(s)	235, 447
EarI	CTCTTC	2 cut(s)	235, 447
Eco130I	CCWWGG	2 cut(s)	339, 939
Eco31I	GGTCTC	2 cut(s)	340, 444
Eco47I	GGWCC	3 cut(s)	56, 491, 1053
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	339, 939
ErhI	CCWWGG	2 cut(s)	339, 939
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	8 cut(s)	254, 343, 362, 449, 507, 563, 728, 867
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	8 cut(s)	250, 339, 358, 445, 503, 559, 724, 863
FauNDI	CATATG	2 cut(s)	61, 235
FbaI	TGATCA	1 cut(s)	826
FokI	GGATG	1 cut(s)	188
FspBI	CTAG	1 cut(s)	915
GsuI	CTGGAG	2 cut(s)	332, 714
HaeIII	GGCC	4 cut(s)	271, 399, 574, 1003
HapII	CCGG	3 cut(s)	494, 747, 1000
HgaI	GACGC	1 cut(s)	967
Hin1II	CATG	8 cut(s)	254, 343, 362, 449, 507, 563, 728, 867
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HinfI	GANTC	2 cut(s)	296, 918
HpaII	CCGG	3 cut(s)	494, 747, 1000
HphI	GGTGA	2 cut(s)	236, 907
Hpy166II	GTNNAC	4 cut(s)	305, 775, 818, 1024
Hpy188I	TCNGA	2 cut(s)	49, 261
Hpy188III	TCNNGA	6 cut(s)	104, 348, 446, 590, 731, 805
Hpy8I	GTNNAC	4 cut(s)	305, 775, 818, 1024
HpyAV	CCTTC	2 cut(s)	155, 945
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	6 cut(s)	116, 278, 606, 635, 740, 950
HpyF10VI	GCNNNNNNNGC	9 cut(s)	161, 533, 641, 844, 847, 956, 965, 968, 1055
HpyF3I	CTNAG	4 cut(s)	48, 76, 755, 881
HpySE526I	ACGT	1 cut(s)	685
Hsp92II	CATG	8 cut(s)	254, 343, 362, 449, 507, 563, 728, 867
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	2 cut(s)	652, 826
LmnI	GCTCC	7 cut(s)	313, 373, 433, 479, 533, 733, 1063
Lsp1109I	GCAGC	8 cut(s)	100, 148, 262, 290, 548, 692, 859, 946
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	1 cut(s)	915
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	3 cut(s)	64, 95, 859
MalI	GATC	2 cut(s)	654, 828
MbiI	CCGCTC	1 cut(s)	1058
MboI	GATC	2 cut(s)	652, 826
MboII	GAAGA	5 cut(s)	38, 119, 252, 434, 680
MhlI	GDGCHC	2 cut(s)	484, 1051
MluCI	AATT	4 cut(s)	179, 320, 522, 994
MlyI	GAGTC	1 cut(s)	912
MnlI	CCTC	7 cut(s)	86, 220, 411, 536, 585, 880, 1047
MseI	TTAA	5 cut(s)	218, 285, 474, 519, 597
MslI	CAYNNNNRTG	2 cut(s)	170, 363
MspI	CCGG	3 cut(s)	494, 747, 1000
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MvnI	CGCG	1 cut(s)	841
MwoI	GCNNNNNNNGC	9 cut(s)	161, 533, 641, 844, 847, 956, 965, 968, 1055
NcoI	CCATGG	1 cut(s)	339
NdeI	CATATG	2 cut(s)	61, 235
NdeII	GATC	2 cut(s)	652, 826
NlaIII	CATG	8 cut(s)	254, 343, 362, 449, 507, 563, 728, 867
NmeAIII	GCCGAG	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	859
PagI	TCATGA	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	296
PinAI	ACCGGT	1 cut(s)	493
PleI	GAGTC	1 cut(s)	912
PpsI	GAGTC	1 cut(s)	912
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspPI	GGNCC	5 cut(s)	56, 269, 398, 491, 1053
PstI	CTGCAG	1 cut(s)	280
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
RseI	CAYNNNNRTG	2 cut(s)	170, 363
Rsr2I	CGGWCCG	1 cut(s)	1053
RsrII	CGGWCCG	1 cut(s)	1053
SaqAI	TTAA	5 cut(s)	218, 285, 474, 519, 597
Sau3AI	GATC	2 cut(s)	652, 826
Sau96I	GGNCC	5 cut(s)	56, 269, 398, 491, 1053
SchI	GAGTC	1 cut(s)	912
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	2 cut(s)	484, 1051
SfaNI	GCATC	1 cut(s)	901
SfcI	CTRYAG	2 cut(s)	276, 528
SinI	GGWCC	3 cut(s)	56, 491, 1053
SmiMI	CAYNNNNRTG	2 cut(s)	170, 363
Sse9I	AATT	4 cut(s)	179, 320, 522, 994
SsiI	CCGC	4 cut(s)	839, 969, 1056, 1063
SspMI	CTAG	1 cut(s)	915
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	2 cut(s)	339, 939
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	688
TaqII	GACCGA	1 cut(s)	1041
TasI	AATT	4 cut(s)	179, 320, 522, 994
TauI	GCSGC	2 cut(s)	841, 971
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	5 cut(s)	218, 285, 474, 519, 597
Tru9I	TTAA	5 cut(s)	218, 285, 474, 519, 597
TscAI	CASTG	3 cut(s)	177, 889, 908
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	9 cut(s)	6, 113, 161, 275, 278, 536, 680, 847, 959
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	7 cut(s)	192, 222, 375, 434, 576, 680, 1002
TspGWI	ACGGA	3 cut(s)	395, 474, 478
TspRI	CASTG	3 cut(s)	177, 889, 908
VpaK11BI	GGWCC	3 cut(s)	56, 491, 1053
XapI	RAATTY	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.