Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003813.1

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

105888 .. 109561

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003813.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgatggtgactaaagaacaaccctgccggcttcacttttctcacttcaatccaacactcttactgaaaacccaattccgaaaaccatctgagcacaccaaaggagataatatcatgggctgctttagttgttgtgtacaagatgataccgataaagctgcggatcatggaccatatgtacctcatggctcagcaggcaatggctaccatcccagagaagctgcgcagagggatactcagattgtaaatatacaaccaattgctgttgctgccattccagtagatgaattgaaagatctgactgataattttggcacaaaggccttaattggtgagggttcatatggaagagtatattatggtgttcttaagagtgggcctgctgctgctattaagaagctagatgccagtaaacaaccacaccaagaatttttgtcacaggtctccatggtttcaagactaaaacatgaaaatgtcgttgaacttgttggttattgtattgatggccctctgcgtctccttgcctatgagtatgctcctaatgggtctcttcatgatattcttcatggacggaaaggtgtcaaggggtcagttccaggtccagttctgtcatggacgcaaagggttaaaatcgcagttggggcagcaagaggacttgaatatttacatgaaaaggctcagccccatataatccatcgtgatattaagtcctgcaatatattgctttttgaagatgacgttgcaaagattgctgattttgatctgtcaaatcaagcccctgatatggcagctcgtcttcattccactcgtgttcttgggacatttggttatcatgctccagagtatgcaatgactggacagctgagttcaaaaagtgatgtctacagctttggtgttgtcttgcttgaactcttgactggccgtaagcctgttgatcatacattgccacgtggccaacagagccttgtgacttgggctacacctaaactgagtgaggataaggtgaagcagtgtgctgatgctagactcaatggtgactaccctcccaaggcagttgcaaagttggctgctgttgctgccttgtgcgtccaatatgaagctgattttcggccaaacatgagcattgtggtcaaggctctacagcctctattgaatgctcggtctggtcctgcccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

392

Amino Acids

42.87

Weight (kDa)

8.49

Isoelectric Point (pI)

21.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	882
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	171
AcoI	YGGCCR	3 cut(s)	919, 952, 1109
AcsI	RAATTY	1 cut(s)	428
AcvI	CACGTG	1 cut(s)	950
AfaI	GTAC	2 cut(s)	138, 180
AfiI	CCNNNNNNNGG	2 cut(s)	784, 1048
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	9 cut(s)	49, 292, 456, 482, 659, 731, 870, 908, 1153
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	7 cut(s)	158, 221, 400, 791, 862, 888, 1100
AluI	AGCT	7 cut(s)	158, 221, 400, 791, 862, 888, 1100
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	3 cut(s)	448, 521, 552
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	6 cut(s)	321, 377, 505, 919, 952, 1109
ApoI	RAATTY	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	5 cut(s)	170, 377, 506, 599, 1166
AsuHPI	GGTGA	4 cut(s)	19, 344, 1015, 1046
AvaII	GGWCC	3 cut(s)	170, 599, 1166
BalI	TGGCCA	1 cut(s)	954
BauI	CACGAG	1 cut(s)	807
BbrPI	CACGTG	1 cut(s)	950
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	4 cut(s)	94, 216, 497, 702
BceAI	ACGGC	1 cut(s)	906
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	597
BciVI	GTATCC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	934
BcoDI	GTCTC	3 cut(s)	448, 521, 552
BfaI	CTAG	2 cut(s)	401, 1023
BfmI	CTRYAG	2 cut(s)	883, 1139
BfrI	CTTAAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	295
BlpI	GCTNAGC	2 cut(s)	190, 678
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	3 cut(s)	170, 599, 1166
BmgT120I	GGNCC	5 cut(s)	170, 377, 506, 599, 1166
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	2 cut(s)	394, 1009
BpiI	GAAGAC	1 cut(s)	788
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
BpmI	CTGGAG	1 cut(s)	822
Bpu1102I	GCTNAGC	2 cut(s)	190, 678
BsaAI	YACGTR	1 cut(s)	950
BsaBI	GATNNNNATC	1 cut(s)	759
BsaI	GGTCTC	2 cut(s)	448, 552
BsaJI	CCNNGG	2 cut(s)	447, 1047
Bsc4I	CCNNNNNNNGG	2 cut(s)	784, 1048
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	5 cut(s)	278, 408, 602, 859, 922
Bse3DI	GCAATG	3 cut(s)	205, 855, 941
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	2 cut(s)	447, 1047
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	2 cut(s)	784, 1048
BseMI	GCAATG	3 cut(s)	205, 855, 941
BseMII	CTCAG	6 cut(s)	81, 204, 251, 692, 854, 980
BseNI	ACTGG	5 cut(s)	278, 408, 602, 859, 922
BshFI	GGCC	6 cut(s)	323, 379, 507, 921, 954, 1111
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	832
BslI	CCNNNNNNNGG	2 cut(s)	784, 1048
BsmAI	GTCTC	3 cut(s)	448, 521, 552
BsmBI	CGTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	832
BsmI	GAATGC	1 cut(s)	1159
BsnI	GGCC	6 cut(s)	323, 379, 507, 921, 954, 1111
Bso31I	GGTCTC	2 cut(s)	448, 552
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	163, 295, 760, 934
Bsp1720I	GCTNAGC	2 cut(s)	190, 678
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	6 cut(s)	323, 379, 507, 921, 954, 1111
BspCNI	CTCAG	6 cut(s)	82, 203, 250, 691, 855, 981
BspHI	TCATGA	1 cut(s)	553
BspPI	GGATC	1 cut(s)	171
BspTI	CTTAAG	1 cut(s)	368
BspTNI	GGTCTC	2 cut(s)	448, 552
BsrDI	GCAATG	3 cut(s)	205, 855, 941
BsrFI	RCCGGY	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	136
BsrI	ACTGG	5 cut(s)	278, 408, 602, 859, 922
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	447, 1047
BssMI	GATC	4 cut(s)	163, 295, 760, 934
BssSI	CACGAG	1 cut(s)	807
BssT1I	CCWWGG	2 cut(s)	447, 1047
Bst2BI	CACGAG	1 cut(s)	807
Bst2UI	CCWGG	1 cut(s)	597
Bst6I	CTCTTC	2 cut(s)	343, 555
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstAUI	TGTACA	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	950
BstC8I	GCNNGC	3 cut(s)	29, 196, 381
BstDEI	CTNAG	6 cut(s)	90, 190, 237, 678, 863, 989
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	4 cut(s)	166, 298, 763, 937
BstMAI	GTCTC	3 cut(s)	448, 521, 552
BstMBI	GATC	4 cut(s)	163, 295, 760, 934
BstMWI	GCNNNNNNNGC	8 cut(s)	195, 269, 641, 749, 960, 1064, 1073, 1076
BstNI	CCWGG	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	2 cut(s)	883, 1139
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	6 cut(s)	323, 379, 507, 921, 954, 1111
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	1016
BtsIMutI	CAGTG	1 cut(s)	1016
Cac8I	GCNNGC	3 cut(s)	29, 196, 381
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	5 cut(s)	170, 377, 506, 599, 1166
CseI	GACGC	3 cut(s)	503, 625, 1075
Csp6I	GTAC	2 cut(s)	137, 179
CviQI	GTAC	2 cut(s)	137, 179
DdeI	CTNAG	6 cut(s)	90, 190, 237, 678, 863, 989
DpnI	GATC	4 cut(s)	165, 297, 762, 936
DpnII	GATC	4 cut(s)	163, 295, 760, 934
EaeI	YGGCCR	3 cut(s)	919, 952, 1109
Eam1104I	CTCTTC	2 cut(s)	343, 555
EarI	CTCTTC	2 cut(s)	343, 555
Eco130I	CCWWGG	2 cut(s)	447, 1047
Eco147I	AGGCCT	1 cut(s)	323
Eco31I	GGTCTC	2 cut(s)	448, 552
Eco47I	GGWCC	3 cut(s)	170, 599, 1166
Eco72I	CACGTG	1 cut(s)	950
EcoRII	CCWGG	1 cut(s)	595
EcoT14I	CCWWGG	2 cut(s)	447, 1047
ErhI	CCWWGG	2 cut(s)	447, 1047
Esp3I	CGTCTC	1 cut(s)	521
FaqI	GGGAC	1 cut(s)	832
FauNDI	CATATG	2 cut(s)	175, 343
FbaI	TGATCA	1 cut(s)	934
FblI	GTMKAC	1 cut(s)	882
FokI	GGATG	1 cut(s)	195
FspBI	CTAG	2 cut(s)	401, 1023
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	6 cut(s)	323, 379, 507, 921, 954, 1111
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	3 cut(s)	503, 625, 1075
HhaI	GCGC	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	1 cut(s)	1026
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	4 cut(s)	19, 344, 1015, 1046
Hpy166II	GTNNAC	3 cut(s)	137, 413, 883
Hpy188I	TCNGA	4 cut(s)	80, 91, 240, 300
Hpy188III	TCNNGA	5 cut(s)	456, 554, 698, 839, 913
Hpy8I	GTNNAC	3 cut(s)	137, 413, 883
HpyCH4IV	ACGT	2 cut(s)	738, 949
HpyCH4V	TGCA	4 cut(s)	714, 743, 848, 1058
HpyF10VI	GCNNNNNNNGC	8 cut(s)	195, 269, 641, 749, 960, 1064, 1073, 1076
HpyF3I	CTNAG	6 cut(s)	90, 190, 237, 678, 863, 989
HpySE526I	ACGT	2 cut(s)	738, 949
HspAI	GCGC	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	4 cut(s)	163, 295, 760, 934
LmnI	GCTCC	2 cut(s)	541, 841
LweI	GCATC	2 cut(s)	394, 1009
MaeI	CTAG	2 cut(s)	401, 1023
MaeII	ACGT	2 cut(s)	738, 949
MaeIII	GTNAC	4 cut(s)	7, 435, 967, 1034
MalI	GATC	4 cut(s)	165, 297, 762, 936
MboI	GATC	4 cut(s)	163, 295, 760, 934
MboII	GAAGA	5 cut(s)	360, 542, 554, 743, 788
MfeI	CAATTG	1 cut(s)	258
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	954
MluCI	AATT	6 cut(s)	74, 258, 287, 307, 327, 428
MluNI	TGGCCA	1 cut(s)	954
MlyI	GAGTC	1 cut(s)	1020
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	8 cut(s)	192, 222, 328, 519, 644, 988, 1053, 1155
Mox20I	TGGCCA	1 cut(s)	954
MroNI	GCCGGC	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	954
MseI	TTAA	5 cut(s)	326, 369, 393, 627, 705
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	954
MspA1I	CMGCKG	1 cut(s)	862
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	597
MunI	CAATTG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	1159
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	8 cut(s)	195, 269, 641, 749, 960, 1064, 1073, 1076
NaeI	GCCGGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	447
NdeI	CATATG	2 cut(s)	175, 343
NdeII	GATC	4 cut(s)	163, 295, 760, 934
NgoMIV	GCCGGC	1 cut(s)	27
NmuCI	GTSAC	4 cut(s)	7, 435, 967, 1034
NsbI	TGCGCA	1 cut(s)	225
PagI	TCATGA	1 cut(s)	553
PceI	AGGCCT	1 cut(s)	323
PctI	GAATGC	1 cut(s)	1159
PdiI	GCCGGC	1 cut(s)	29
PleI	GAGTC	1 cut(s)	1020
PmaCI	CACGTG	1 cut(s)	950
PmlI	CACGTG	1 cut(s)	950
PpsI	GAGTC	1 cut(s)	1020
Ppu21I	YACGTR	1 cut(s)	950
Psp6I	CCWGG	1 cut(s)	595
PspCI	CACGTG	1 cut(s)	950
PspGI	CCWGG	1 cut(s)	595
PspPI	GGNCC	5 cut(s)	170, 377, 506, 599, 1166
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	862
RsaI	GTAC	2 cut(s)	138, 180
RsaNI	GTAC	2 cut(s)	137, 179
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	5 cut(s)	326, 369, 393, 627, 705
Sau3AI	GATC	4 cut(s)	163, 295, 760, 934
Sau96I	GGNCC	5 cut(s)	170, 377, 506, 599, 1166
SchI	GAGTC	1 cut(s)	1020
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	394, 1009
SfcI	CTRYAG	2 cut(s)	883, 1139
SinI	GGWCC	3 cut(s)	170, 599, 1166
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	6 cut(s)	74, 258, 287, 307, 327, 428
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	161
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	2 cut(s)	401, 1023
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	595
StyI	CCWWGG	2 cut(s)	447, 1047
TaiI	ACGT	2 cut(s)	741, 952
TaqII	GACCGA	1 cut(s)	1149
TasI	AATT	6 cut(s)	74, 258, 287, 307, 327, 428
TatI	WGTACW	1 cut(s)	136
Tru1I	TTAA	5 cut(s)	326, 369, 393, 627, 705
Tru9I	TTAA	5 cut(s)	326, 369, 393, 627, 705
TscAI	CASTG	1 cut(s)	1016
TseFI	GTSAC	4 cut(s)	7, 435, 967, 1034
Tsp45I	GTSAC	4 cut(s)	7, 435, 967, 1034
TspDTI	ATGAA	8 cut(s)	300, 330, 483, 542, 554, 684, 788, 1110
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	1 cut(s)	1016
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	3 cut(s)	170, 599, 1166
XapI	RAATTY	1 cut(s)	428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	882
XspI	CTAG	2 cut(s)	401, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.