Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

37529340 .. 37530738

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0217100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGACCATATCAAACAACAAACAGACCATCTCTCCTAAACCCCAAAGAACCCAATTCGCCACCATGAAGAAAACCGTTACCACACCGACCACGGCGTCGTCGGCGTCGTCTTCATCATCCTCAGTGAAGTCAAGCACCACAGGTCCTCCGATGGAGGAAGACCGATCCGAAAGCTGCTACTACCCAGGTTGCAGAAAAGACGCCAATTGCAACTGTGATATGTGCTTGGCCAGCATCAATGCCACTCTTGATTTGATGCCCTTTAGCGTCCAGAAGAGCTCGATGACAAAGTTCTCGTCGTCGAGGCCCTATCGGCCCAATTCTAGTGTTGAGCAGACTCCCATTTCTTTTGACGCTTCGGTTTTGTCGACCCCAATATCGACCTCTCCTCGGTTTCAAGCTTCTCCGGATCTTAAGCCCTCTGCAAGATTGGATTTTGAGCAGAGTGTGGTGGAGAAAGAGGAGGGGAGGAAATGGGGTTTTGGGTGGGATTGTTGGAAACTGGTTCTGGGTTTAAGTTTGGTTTATGTGGTGGTTTATGGGTTTTATTCTAATTTGGCTTCTGGGGTTTTGAAACCTGTTTTGTCACCTGAGATTGTGAGAAATGCTGGTGAGAAATCTTGGGTTGTGCAAGATTTGAATGGGAGGCTGAGGTTCTTGCAGAAAGAGATGCAGGGTCTTGTTCCTGGCAAGGTTTCAAATTGCAGCTATCCTAATTCTCTTTGGGAAATTACTCAGGATGGTTTGCTTCTGAGTTCACATTGTAAACTGTTCAAATCTGCAATTGAAGAGGTGAGCATATGGGGGTGGCCTTTGCAGACTGCAGGGTTGCTCACAACTGGGTTTTCGTCTCGGTCTTACACAATCTTATCAGGCAGAGTCACAGAGTGGTCAGATGGAAAGGTTGGCTATGTGATTCGAAAGGAAAACTCGTCTTGGGTGCAAAGGAATTGGGGTGCCTCAGCAGTGCAGTTAGATCCCAATACATGGCTTCTTGAGTATCGACGGAGTTCAATATCTCACAACCAAAGATTGGTTTCAGCAGTACTGTCTTTCTTGAAGTATAAACTTTCAAGAGCACTTGGAAAGATTAAGCAGAAGTTTTGGCTCCCCTCTACTTTTGGAAATAACCAGTACTATGAAGTTACTGCTGAATATAACATCAAGATCCCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

392

Amino Acids

43.77

Weight (kDa)

9.36

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	956
AccB7I	CCANNNNNTGG	2 cut(s)	987, 1033
AccI	GTMKAC	1 cut(s)	368
AccIII	TCCGGA	1 cut(s)	406
AclWI	GGATC	4 cut(s)	159, 417, 971, 1162
AcoI	YGGCCR	1 cut(s)	228
AcyI	GRCGYC	3 cut(s)	95, 104, 201
AdeI	CACNNNGTG	1 cut(s)	888
AfaI	GTAC	2 cut(s)	1047, 1136
AfiI	CCNNNNNNNGG	3 cut(s)	390, 987, 1033
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	9 cut(s)	398, 574, 640, 699, 775, 788, 1014, 1060, 1074
AjnI	CCWGG	2 cut(s)	184, 685
AluBI	AGCT	4 cut(s)	174, 279, 401, 708
AluI	AGCT	4 cut(s)	174, 279, 401, 708
Alw21I	GWGCWC	2 cut(s)	281, 1081
Alw26I	GTCTC	1 cut(s)	855
AlwI	GGATC	4 cut(s)	159, 417, 971, 1162
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	4 cut(s)	228, 305, 314, 809
ApeKI	GCWGC	2 cut(s)	174, 705
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspS9I	GGNCC	3 cut(s)	143, 306, 315
AsuHPI	GGTGA	3 cut(s)	579, 623, 805
AsuII	TTCGAA	1 cut(s)	919
AvaII	GGWCC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	956
BanII	GRGCYC	1 cut(s)	281
BbsI	GAAGAC	2 cut(s)	102, 165
Bbv12I	GWGCWC	2 cut(s)	281, 1081
BbvCI	CCTCAGC	2 cut(s)	650, 961
BbvI	GCAGC	2 cut(s)	161, 717
BccI	CCATC	4 cut(s)	35, 145, 734, 890
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	2 cut(s)	186, 687
BcoDI	GTCTC	1 cut(s)	855
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	822
BfrI	CTTAAG	1 cut(s)	413
BglI	GCCNNNNNGGC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	175, 706
BlsI	GCNGC	2 cut(s)	176, 707
BmcAI	AGTACT	2 cut(s)	1047, 1136
Bme1390I	CCNGG	2 cut(s)	186, 687
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	143, 306, 315
BmiI	GGNNCC	2 cut(s)	958, 1109
BmrFI	CCNGG	2 cut(s)	186, 687
BmrI	ACTGGG	1 cut(s)	849
BmsI	GCATC	3 cut(s)	243, 246, 660
BmuI	ACTGGG	1 cut(s)	849
BpiI	GAAGAC	2 cut(s)	102, 165
Bpu10I	CCTNAGC	2 cut(s)	650, 961
Bpu14I	TTCGAA	1 cut(s)	919
BpuEI	CTTGAG	1 cut(s)	1016
BsaHI	GRCGYC	3 cut(s)	95, 104, 201
BsaJI	CCNNGG	3 cut(s)	90, 184, 389
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 130, 160
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 987, 1033
Bse1I	ACTGG	3 cut(s)	507, 844, 1132
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	2 cut(s)	186, 687
BseDI	CCNNGG	3 cut(s)	90, 184, 389
BseGI	GGATG	2 cut(s)	116, 745
BseLI	CCNNNNNNNGG	3 cut(s)	390, 987, 1033
BseMII	CTCAG	6 cut(s)	135, 582, 641, 743, 749, 975
BseNI	ACTGG	3 cut(s)	507, 844, 1132
BseRI	GAGGAG	2 cut(s)	378, 476
BseXI	GCAGC	2 cut(s)	161, 717
BsgI	GTGCAG	1 cut(s)	989
BshFI	GGCC	4 cut(s)	230, 307, 316, 811
BshNI	GGYRCC	1 cut(s)	956
BsiHKAI	GWGCWC	2 cut(s)	281, 1081
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	3 cut(s)	390, 987, 1033
BsmAI	GTCTC	1 cut(s)	855
BsmBI	CGTCTC	1 cut(s)	855
BsnI	GGCC	4 cut(s)	230, 307, 316, 811
Bsp119I	TTCGAA	1 cut(s)	919
Bsp1286I	GDGCHC	2 cut(s)	281, 1081
Bsp13I	TCCGGA	1 cut(s)	406
Bsp143I	GATC	4 cut(s)	164, 409, 976, 1167
BspANI	GGCC	4 cut(s)	230, 307, 316, 811
BspCNI	CTCAG	6 cut(s)	134, 583, 642, 744, 748, 974
BspEI	TCCGGA	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	958, 1109
BspMAI	CTGCAG	1 cut(s)	826
BspPI	GGATC	4 cut(s)	159, 417, 971, 1162
BspQI	GCTCTTC	1 cut(s)	269
BspT104I	TTCGAA	1 cut(s)	919
BspT107I	GGYRCC	1 cut(s)	956
BspTI	CTTAAG	1 cut(s)	413
BsrI	ACTGG	3 cut(s)	507, 844, 1132
BssECI	CCNNGG	3 cut(s)	90, 184, 389
BssMI	GATC	4 cut(s)	164, 409, 976, 1167
BssNI	GRCGYC	3 cut(s)	95, 104, 201
Bst2UI	CCWGG	2 cut(s)	186, 687
Bst4CI	ACNGT	4 cut(s)	76, 215, 771, 1050
Bst6I	CTCTTC	2 cut(s)	269, 783
BstACI	GRCGYC	3 cut(s)	95, 104, 201
BstAFI	CTTAAG	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	919
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	6 cut(s)	121, 591, 650, 735, 752, 961
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	116, 745
BstKTI	GATC	4 cut(s)	167, 412, 979, 1170
BstMAI	GTCTC	1 cut(s)	855
BstMBI	GATC	4 cut(s)	164, 409, 976, 1167
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 231, 313
BstNI	CCWGG	2 cut(s)	186, 687
BstSCI	CCNGG	2 cut(s)	184, 685
BstSFI	CTRYAG	1 cut(s)	822
BstV1I	GCAGC	2 cut(s)	161, 717
BstV2I	GAAGAC	2 cut(s)	102, 165
BstX2I	RGATCY	3 cut(s)	409, 976, 1167
BstYI	RGATCY	3 cut(s)	409, 976, 1167
BsuRI	GGCC	4 cut(s)	230, 307, 316, 811
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	116, 745
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	2 cut(s)	129, 972
Cac8I	GCNNGC	1 cut(s)	232
Cfr13I	GGNCC	3 cut(s)	143, 306, 315
CseI	GACGC	5 cut(s)	84, 93, 209, 256, 362
Csp6I	GTAC	2 cut(s)	1046, 1135
CviAII	CATG	2 cut(s)	64, 987
CviQI	GTAC	2 cut(s)	1046, 1135
DdeI	CTNAG	6 cut(s)	121, 591, 650, 735, 752, 961
DpnI	GATC	4 cut(s)	166, 411, 978, 1169
DpnII	GATC	4 cut(s)	164, 409, 976, 1167
DraIII	CACNNNGTG	1 cut(s)	888
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	269, 783
EarI	CTCTTC	2 cut(s)	269, 783
Ecl136II	GAGCTC	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	279
EcoO109I	RGGNCCY	2 cut(s)	143, 306
EcoRII	CCWGG	2 cut(s)	184, 685
EcoT38I	GRGCYC	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	855
FaeI	CATG	2 cut(s)	67, 990
FatI	CATG	2 cut(s)	63, 986
FauNDI	CATATG	1 cut(s)	800
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	2 cut(s)	175, 706
FokI	GGATG	2 cut(s)	103, 752
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	2 cut(s)	175, 706
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	2 cut(s)	175, 706
HaeIII	GGCC	4 cut(s)	230, 307, 316, 811
HapII	CCGG	1 cut(s)	407
HgaI	GACGC	5 cut(s)	84, 93, 209, 256, 362
Hin1I	GRCGYC	3 cut(s)	95, 104, 201
Hin1II	CATG	2 cut(s)	67, 990
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	3 cut(s)	337, 879, 916
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	3 cut(s)	579, 623, 805
Hpy166II	GTNNAC	3 cut(s)	369, 758, 767
Hpy188I	TCNGA	4 cut(s)	150, 169, 753, 895
Hpy188III	TCNNGA	8 cut(s)	248, 271, 407, 737, 995, 1057, 1074, 1165
Hpy8I	GTNNAC	3 cut(s)	369, 758, 767
Hpy99I	CGWCG	6 cut(s)	100, 103, 109, 301, 304, 1008
HpyCH4III	ACNGT	4 cut(s)	76, 215, 771, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 231, 313
HpyF3I	CTNAG	6 cut(s)	121, 591, 650, 735, 752, 961
Hsp92I	GRCGYC	3 cut(s)	95, 104, 201
Hsp92II	CATG	2 cut(s)	67, 990
Kpn2I	TCCGGA	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	164, 409, 976, 1167
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	1113
Lsp1109I	GCAGC	2 cut(s)	161, 717
LweI	GCATC	3 cut(s)	243, 246, 660
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	4 cut(s)	76, 585, 880, 1144
MalI	GATC	4 cut(s)	166, 411, 978, 1169
MboI	GATC	4 cut(s)	164, 409, 976, 1167
MboII	GAAGA	5 cut(s)	79, 102, 170, 286, 800
MfeI	CAATTG	2 cut(s)	205, 783
MflI	RGATCY	3 cut(s)	409, 976, 1167
MhlI	GDGCHC	2 cut(s)	281, 1081
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	9 cut(s)	53, 205, 319, 553, 700, 715, 729, 783, 949
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	331, 888
MmeI	TCCRAC	1 cut(s)	476
Mox20I	TGGCCA	1 cut(s)	230
MroI	TCCGGA	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	3 cut(s)	414, 515, 1092
Msp20I	TGGCCA	1 cut(s)	230
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	186, 687
MunI	CAATTG	2 cut(s)	205, 783
MvaI	CCWGG	2 cut(s)	186, 687
MwoI	GCNNNNNNNGC	3 cut(s)	101, 231, 313
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	4 cut(s)	164, 409, 976, 1167
NlaIII	CATG	2 cut(s)	67, 990
NlaIV	GGNNCC	2 cut(s)	958, 1109
NmuCI	GTSAC	2 cut(s)	585, 880
NspV	TTCGAA	1 cut(s)	919
PciSI	GCTCTTC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 365
PfeI	GAWTC	1 cut(s)	916
PflMI	CCANNNNNTGG	2 cut(s)	987, 1033
PkrI	GCNGC	2 cut(s)	176, 707
PleI	GAGTC	2 cut(s)	331, 887
PpsI	GAGTC	2 cut(s)	331, 887
PpuMI	RGGWCCY	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	184, 685
PspGI	CCWGG	2 cut(s)	184, 685
PspN4I	GGNNCC	2 cut(s)	958, 1109
PspPI	GGNCC	3 cut(s)	143, 306, 315
PspPPI	RGGWCCY	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	826
PsuI	RGATCY	3 cut(s)	409, 976, 1167
RsaI	GTAC	2 cut(s)	1047, 1136
RsaNI	GTAC	2 cut(s)	1046, 1135
SacI	GAGCTC	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	367
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	414, 515, 1092
SatI	GCNGC	2 cut(s)	175, 706
Sau3AI	GATC	4 cut(s)	164, 409, 976, 1167
Sau96I	GGNCC	3 cut(s)	143, 306, 315
ScaI	AGTACT	2 cut(s)	1047, 1136
SchI	GAGTC	2 cut(s)	331, 888
ScrFI	CCNGG	2 cut(s)	186, 687
SduI	GDGCHC	2 cut(s)	281, 1081
SfaNI	GCATC	3 cut(s)	243, 246, 660
SfcI	CTRYAG	1 cut(s)	822
SfiI	GGCCNNNNNGGCC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	919
SinI	GGWCC	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	413, 995
SmoI	CTYRAG	2 cut(s)	413, 995
Sse9I	AATT	9 cut(s)	53, 205, 319, 553, 700, 715, 729, 783, 949
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	184, 685
TaaI	ACNGT	4 cut(s)	76, 215, 771, 1050
TaqI	TCGA	6 cut(s)	281, 302, 368, 380, 919, 1003
TaqII	GACCGA	2 cut(s)	177, 843
TasI	AATT	9 cut(s)	53, 205, 319, 553, 700, 715, 729, 783, 949
TatI	WGTACW	2 cut(s)	1045, 1134
TfiI	GAWTC	1 cut(s)	916
Tru1I	TTAA	3 cut(s)	414, 515, 1092
Tru9I	TTAA	3 cut(s)	414, 515, 1092
TscAI	CASTG	2 cut(s)	129, 972
TseFI	GTSAC	2 cut(s)	585, 880
TseI	GCWGC	2 cut(s)	174, 705
Tsp45I	GTSAC	2 cut(s)	585, 880
TspDTI	ATGAA	3 cut(s)	80, 102, 1155
TspGWI	ACGGA	1 cut(s)	1021
TspRI	CASTG	2 cut(s)	129, 972
Van91I	CCANNNNNTGG	2 cut(s)	987, 1033
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	368
XspI	CTAG	1 cut(s)	324
ZrmI	AGTACT	2 cut(s)	1047, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.