Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298183.1

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Reverse (-)

288 .. 881

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgattgaaaatgggcatgttccagaatcatcactattcaggtcagtaatggagagtctatttgaagatggtagggttcaaacggcaagccgcgtaatgaagagtatggtagagaagggagtgaatgagaacatggatttagttgccaagatcttggaagccctctttatcagaggtcatgttgaggaagcgcttggacggattgatctacttatgcaaagtgggtgtgcacctgaatttgacagcctcttatctcttcttgctgaaaaaggaaagaccattgcagctgttaagctattagatttttgcctcgagagagattgcatggtagaattttcaagctatgataaggtgttggatgctctcttagcatcaggaaagactctaaatgcgtactcaattttgtgtaaaataatggataaaggaggggtcactgattggcgtagcactgacgatctgattaagagcctcaatctagagggtaacacaaaacaagctgacgtcctctctagaaagataaagggaggggaggcaaaagccagtcgaagtaaaatggggaagaaacatgcaagccatgcaggattgggtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

197

Amino Acids

21.48

Weight (kDa)

6.44

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccII	CGCG	1 cut(s)	93
AciI	CCGC	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	236, 332
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	1 cut(s)	395
AfeI	AGCGCT	1 cut(s)	192
AgsI	TTSAA	4 cut(s)	8, 65, 80, 339
AluBI	AGCT	4 cut(s)	287, 295, 342, 497
AluI	AGCT	4 cut(s)	287, 295, 342, 497
Alw21I	GWGCWC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	311
Aor51HI	AGCGCT	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	236, 332
AspLEI	GCGC	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	99
BfaI	CTAG	2 cut(s)	476, 510
BfoI	RGCGCY	1 cut(s)	194
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	2 cut(s)	91, 285
BlsI	GCNGC	2 cut(s)	92, 286
BmeT110I	CYCGRG	1 cut(s)	311
BmsI	GCATC	2 cut(s)	349, 380
BsaHI	GRCGYC	1 cut(s)	501
Bse1I	ACTGG	1 cut(s)	540
Bse3DI	GCAATG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	540
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	150, 205, 454
BspACI	CCGC	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	540
BssMI	GATC	3 cut(s)	150, 205, 454
BssNI	GRCGYC	1 cut(s)	501
Bst6I	CTCTTC	2 cut(s)	95, 261
BstACI	GRCGYC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	88, 571
BstDEI	CTNAG	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	3 cut(s)	153, 208, 457
BstMBI	GATC	3 cut(s)	150, 205, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 575
BstNSI	RCATGY	2 cut(s)	20, 569
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	432, 447
Cac8I	GCNNGC	2 cut(s)	88, 571
CfoI	GCGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	6 cut(s)	17, 133, 179, 325, 566, 575
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	3 cut(s)	152, 207, 456
DpnII	GATC	3 cut(s)	150, 205, 454
Eam1104I	CTCTTC	2 cut(s)	95, 261
EarI	CTCTTC	2 cut(s)	95, 261
Eco47III	AGCGCT	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	311
FaeI	CATG	6 cut(s)	20, 136, 182, 328, 569, 578
FaiI	YATR	9 cut(s)	18, 107, 134, 180, 215, 326, 345, 567, 576
FatI	CATG	6 cut(s)	16, 132, 178, 324, 565, 574
Fnu4HI	GCNGC	2 cut(s)	91, 285
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	91, 285
FspBI	CTAG	2 cut(s)	476, 510
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	2 cut(s)	91, 285
HaeII	RGCGCY	1 cut(s)	194
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	6 cut(s)	20, 136, 182, 328, 569, 578
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	3 cut(s)	26, 55, 382
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	173, 459
Hpy188III	TCNNGA	5 cut(s)	23, 313, 375, 476, 510
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	217, 230, 284, 324, 569, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 575
HpyF3I	CTNAG	1 cut(s)	367
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	6 cut(s)	20, 136, 182, 328, 569, 578
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	150, 205, 454
LpnPI	CCDG	6 cut(s)	25, 36, 246, 360, 553, 564
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	2 cut(s)	349, 380
MaeI	CTAG	2 cut(s)	476, 510
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	430, 482
MalI	GATC	3 cut(s)	152, 207, 456
MboI	GATC	3 cut(s)	150, 205, 454
MboII	GAAGA	4 cut(s)	77, 112, 248, 571
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	3 cut(s)	236, 332, 399
MlyI	GAGTC	2 cut(s)	64, 376
MmeI	TCCRAC	1 cut(s)	336
MseI	TTAA	2 cut(s)	291, 462
MspA1I	CMGCKG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	368, 575
NdeII	GATC	3 cut(s)	150, 205, 454
NlaIII	CATG	6 cut(s)	20, 136, 182, 328, 569, 578
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	2 cut(s)	20, 569
PaeR7I	CTCGAG	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	92, 286
PleI	GAGTC	2 cut(s)	63, 376
PpsI	GAGTC	2 cut(s)	63, 376
PsuI	RGATCY	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	2 cut(s)	291, 462
SatI	GCNGC	2 cut(s)	91, 285
Sau3AI	GATC	3 cut(s)	150, 205, 454
SchI	GAGTC	2 cut(s)	64, 376
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	9 cut(s)	44, 178, 235, 289, 297, 344, 354, 499, 504
SfaNI	GCATC	2 cut(s)	349, 380
Sfr274I	CTCGAG	1 cut(s)	311
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	236, 332, 399
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	2 cut(s)	476, 510
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	312, 544
TasI	AATT	3 cut(s)	236, 332, 399
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	291, 462
Tru9I	TTAA	2 cut(s)	291, 462
TscAI	CASTG	2 cut(s)	439, 454
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	2 cut(s)	439, 454
VneI	GTGCAC	1 cut(s)	228
XapI	RAATTY	2 cut(s)	236, 332
XbaI	TCTAGA	2 cut(s)	475, 509
XceI	RCATGY	2 cut(s)	20, 569
XhoI	CTCGAG	1 cut(s)	311
XspI	CTAG	2 cut(s)	476, 510
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.