Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

52642576 .. 52645953

Gene Structure 3378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39630

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGCTGCTTCAGTTGTTGTGTACAAGATGATACCGATACAGCTGCGGATCATGGACCATATGTACCGCATGGCTCAGCAGGCAATGGCTACCATCCCAGAGAAGCTGCGCAGAGGGATACTCAGATTGTAAATATACAACCAATTGCTGTTGCTGCCATTCCAGTAGATGAATTGAAAGATCTGACTGATAATTTTGGCACAAAGGCCTTAATTGGTGAGGGTTCATATGGAAGAGTATATTATGGTGTTCTTAAGAGTGGGCCTGCTGCTGCTATTAAGAAGCTAGATGCCAGTAAACAACCGCACCAAGAATTTTTGTCACAGGTCTCCATGGTTTCAAGACTAAAACATGAAAATGTCGTTGAACTTGTTGGTTATTGTATTGATGGCCCTCTGCGTCTCCTTGCCTATGAGTATGCTCCTAATGGGTCTCTTCATGATATTCTTCATGGACGGAAAGGTGTCAAGGGGTCAGTTCCAGGTCCAGTTCTGTCATGGACGCAAAGGGTTAAAATCGCAGTTGGGGCAGCAAGAGGACTTGAATATTTACATGAAAAGGCTCAGCCCCATATAATCCATCGTGATATTAAGTCCTGCAATATATTGCTTTTTGAAGATGACGTTGCAAAGATTGCTGATTTTGATCTGTCAAATCAAGCCCCTGATATGGCAGCTCGTCTTCATTCCACTCGTGTTCTTGGGACATTTGGTTATCATGCTCCAGAGTATGCAATGACTGGACAGCTGAGTTCAAAAAGTGATGTCTACAGCTTTGGTGTTGTCTTGCTTGAACTCTTGACCGGCCGTAAGCCTGTCGATCATACATTGCCACGTGGCCAACAGAGCCTTGTGACTTGGGCTACACCTAAACTGAGTGAGGATAAGGTGAAGCAGTGCGCTGATGCTAGACTCAATGGTGACTACCCTCCCAAGGCAGTTGCAAAGTTGGCTGCTGTTGCTGCCTTGTGTGTCCAATATGAAGCTGATTTTCGGCCAAACATGAGCATTGTGGTCAAGGCTCTACAGCCTCTATTGAATGCTCGGTCTGGTCCTGCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

354

Amino Acids

38.35

Weight (kDa)

7.22

Isoelectric Point (pI)

22.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	69 - 276	1.9e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	70 - 342	7.4e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	768
AciI	CCGC	3 cut(s)	47, 68, 305
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	3 cut(s)	805, 838, 995
AcsI	RAATTY	1 cut(s)	314
AcvI	CACGTG	1 cut(s)	836
AfaI	GTAC	2 cut(s)	24, 66
AfiI	CCNNNNNNNGG	2 cut(s)	670, 934
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	8 cut(s)	178, 342, 368, 545, 617, 756, 794, 1039
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	7 cut(s)	44, 107, 286, 677, 748, 774, 986
AluI	AGCT	7 cut(s)	44, 107, 286, 677, 748, 774, 986
Alw26I	GTCTC	3 cut(s)	334, 407, 438
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	6 cut(s)	207, 263, 391, 805, 838, 995
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	112, 902
AspS9I	GGNCC	5 cut(s)	56, 263, 392, 485, 1052
AsuHPI	GGTGA	3 cut(s)	230, 901, 932
AvaII	GGWCC	3 cut(s)	56, 485, 1052
BalI	TGGCCA	1 cut(s)	840
BauI	CACGAG	1 cut(s)	693
BbrPI	CACGTG	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	674
BbvI	GCAGC	9 cut(s)	31, 94, 142, 256, 259, 542, 686, 940, 949
BccI	CCATC	3 cut(s)	102, 383, 588
BceAI	ACGGC	1 cut(s)	792
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	112
BcoDI	GTCTC	3 cut(s)	334, 407, 438
BfaI	CTAG	2 cut(s)	287, 909
BfmI	CTRYAG	2 cut(s)	769, 1025
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	112
BglII	AGATCT	1 cut(s)	181
BlpI	GCTNAGC	2 cut(s)	76, 564
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	3 cut(s)	56, 485, 1052
BmgT120I	GGNCC	5 cut(s)	56, 263, 392, 485, 1052
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	280, 895
BpiI	GAAGAC	1 cut(s)	674
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	708
Bpu1102I	GCTNAGC	2 cut(s)	76, 564
BsaAI	YACGTR	1 cut(s)	836
BsaBI	GATNNNNATC	1 cut(s)	645
BsaI	GGTCTC	2 cut(s)	334, 438
BsaJI	CCNNGG	2 cut(s)	333, 933
Bsc4I	CCNNNNNNNGG	2 cut(s)	670, 934
Bse118I	RCCGGY	1 cut(s)	803
Bse1I	ACTGG	4 cut(s)	164, 294, 488, 745
Bse3DI	GCAATG	3 cut(s)	91, 741, 827
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	333, 933
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	2 cut(s)	670, 934
BseMI	GCAATG	3 cut(s)	91, 741, 827
BseMII	CTCAG	5 cut(s)	90, 137, 578, 740, 866
BseNI	ACTGG	4 cut(s)	164, 294, 488, 745
BseX3I	CGGCCG	1 cut(s)	805
BseXI	GCAGC	9 cut(s)	31, 94, 142, 256, 259, 542, 686, 940, 949
Bsh1285I	CGRYCG	1 cut(s)	808
BshFI	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
BsiEI	CGRYCG	1 cut(s)	808
BsiSI	CCGG	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	2 cut(s)	670, 934
BsmAI	GTCTC	3 cut(s)	334, 407, 438
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	718
BsmI	GAATGC	1 cut(s)	1045
BsnI	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
Bso31I	GGTCTC	2 cut(s)	334, 438
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	49, 181, 646, 820
Bsp1720I	GCTNAGC	2 cut(s)	76, 564
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	3 cut(s)	47, 68, 305
BspANI	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
BspCNI	CTCAG	5 cut(s)	89, 136, 577, 741, 867
BspHI	TCATGA	1 cut(s)	439
BspPI	GGATC	1 cut(s)	57
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	2 cut(s)	334, 438
BsrDI	GCAATG	3 cut(s)	91, 741, 827
BsrFI	RCCGGY	1 cut(s)	803
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	4 cut(s)	164, 294, 488, 745
BssAI	RCCGGY	1 cut(s)	803
BssECI	CCNNGG	2 cut(s)	333, 933
BssMI	GATC	4 cut(s)	49, 181, 646, 820
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	2 cut(s)	333, 933
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	483
Bst6I	CTCTTC	2 cut(s)	229, 441
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	836
BstC8I	GCNNGC	2 cut(s)	82, 267
BstDEI	CTNAG	5 cut(s)	76, 123, 564, 749, 875
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	112, 902
BstKTI	GATC	4 cut(s)	52, 184, 649, 823
BstMAI	GTCTC	3 cut(s)	334, 407, 438
BstMBI	GATC	4 cut(s)	49, 181, 646, 820
BstMCI	CGRYCG	1 cut(s)	808
BstMWI	GCNNNNNNNGC	8 cut(s)	81, 155, 527, 635, 846, 950, 959, 962
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	2 cut(s)	769, 1025
BstV1I	GCAGC	9 cut(s)	31, 94, 142, 256, 259, 542, 686, 940, 949
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BstZI	CGGCCG	1 cut(s)	805
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	902
BtsIMutI	CAGTG	1 cut(s)	902
Cac8I	GCNNGC	2 cut(s)	82, 267
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	2 cut(s)	112, 902
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	5 cut(s)	56, 263, 392, 485, 1052
CseI	GACGC	2 cut(s)	389, 511
Csp6I	GTAC	2 cut(s)	23, 65
CviQI	GTAC	2 cut(s)	23, 65
DdeI	CTNAG	5 cut(s)	76, 123, 564, 749, 875
DpnI	GATC	4 cut(s)	51, 183, 648, 822
DpnII	GATC	4 cut(s)	49, 181, 646, 820
EaeI	YGGCCR	3 cut(s)	805, 838, 995
EagI	CGGCCG	1 cut(s)	805
Eam1104I	CTCTTC	2 cut(s)	229, 441
EarI	CTCTTC	2 cut(s)	229, 441
EclXI	CGGCCG	1 cut(s)	805
Eco130I	CCWWGG	2 cut(s)	333, 933
Eco147I	AGGCCT	1 cut(s)	209
Eco31I	GGTCTC	2 cut(s)	334, 438
Eco47I	GGWCC	3 cut(s)	56, 485, 1052
Eco52I	CGGCCG	1 cut(s)	805
Eco72I	CACGTG	1 cut(s)	836
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	333, 933
ErhI	CCWWGG	2 cut(s)	333, 933
Esp3I	CGTCTC	1 cut(s)	407
FaqI	GGGAC	1 cut(s)	718
FauNDI	CATATG	2 cut(s)	61, 229
FblI	GTMKAC	1 cut(s)	768
FokI	GGATG	1 cut(s)	81
FspBI	CTAG	2 cut(s)	287, 909
FspI	TGCGCA	1 cut(s)	111
GlaI	GCGC	2 cut(s)	111, 901
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	6 cut(s)	209, 265, 393, 807, 840, 997
HapII	CCGG	1 cut(s)	804
HgaI	GACGC	2 cut(s)	389, 511
HhaI	GCGC	2 cut(s)	112, 902
Hin6I	GCGC	2 cut(s)	110, 900
HinP1I	GCGC	2 cut(s)	110, 900
HinfI	GANTC	1 cut(s)	912
HpaII	CCGG	1 cut(s)	804
HphI	GGTGA	3 cut(s)	230, 901, 932
Hpy166II	GTNNAC	3 cut(s)	23, 299, 769
Hpy188I	TCNGA	2 cut(s)	126, 186
Hpy188III	TCNNGA	5 cut(s)	342, 440, 584, 725, 799
Hpy8I	GTNNAC	3 cut(s)	23, 299, 769
HpyCH4IV	ACGT	2 cut(s)	624, 835
HpyCH4V	TGCA	4 cut(s)	600, 629, 734, 944
HpyF10VI	GCNNNNNNNGC	8 cut(s)	81, 155, 527, 635, 846, 950, 959, 962
HpyF3I	CTNAG	5 cut(s)	76, 123, 564, 749, 875
HpySE526I	ACGT	2 cut(s)	624, 835
HspAI	GCGC	2 cut(s)	110, 900
Kzo9I	GATC	4 cut(s)	49, 181, 646, 820
LmnI	GCTCC	2 cut(s)	427, 727
Lsp1109I	GCAGC	9 cut(s)	31, 94, 142, 256, 259, 542, 686, 940, 949
LweI	GCATC	2 cut(s)	280, 895
MaeI	CTAG	2 cut(s)	287, 909
MaeII	ACGT	2 cut(s)	624, 835
MaeIII	GTNAC	3 cut(s)	321, 853, 920
MalI	GATC	4 cut(s)	51, 183, 648, 822
MboI	GATC	4 cut(s)	49, 181, 646, 820
MboII	GAAGA	5 cut(s)	246, 428, 440, 629, 674
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	840
MluCI	AATT	5 cut(s)	144, 173, 193, 213, 314
MluNI	TGGCCA	1 cut(s)	840
MlyI	GAGTC	1 cut(s)	906
MnlI	CCTC	7 cut(s)	108, 214, 405, 530, 874, 939, 1041
Mox20I	TGGCCA	1 cut(s)	840
MscI	TGGCCA	1 cut(s)	840
MseI	TTAA	5 cut(s)	212, 255, 279, 513, 591
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	840
MspA1I	CMGCKG	2 cut(s)	44, 748
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	1 cut(s)	804
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	1045
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	8 cut(s)	81, 155, 527, 635, 846, 950, 959, 962
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	2 cut(s)	61, 229
NdeII	GATC	4 cut(s)	49, 181, 646, 820
NmuCI	GTSAC	3 cut(s)	321, 853, 920
NsbI	TGCGCA	1 cut(s)	111
PagI	TCATGA	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	209
PctI	GAATGC	1 cut(s)	1045
PleI	GAGTC	1 cut(s)	906
PmaCI	CACGTG	1 cut(s)	836
PmlI	CACGTG	1 cut(s)	836
PpsI	GAGTC	1 cut(s)	906
Ppu21I	YACGTR	1 cut(s)	836
Psp6I	CCWGG	1 cut(s)	481
PspCI	CACGTG	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	481
PspPI	GGNCC	5 cut(s)	56, 263, 392, 485, 1052
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	2 cut(s)	44, 748
RsaI	GTAC	2 cut(s)	24, 66
RsaNI	GTAC	2 cut(s)	23, 65
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	5 cut(s)	212, 255, 279, 513, 591
Sau3AI	GATC	4 cut(s)	49, 181, 646, 820
Sau96I	GGNCC	5 cut(s)	56, 263, 392, 485, 1052
SchI	GAGTC	1 cut(s)	906
ScrFI	CCNGG	1 cut(s)	483
SfaNI	GCATC	2 cut(s)	280, 895
SfcI	CTRYAG	2 cut(s)	769, 1025
SinI	GGWCC	3 cut(s)	56, 485, 1052
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	144, 173, 193, 213, 314
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	3 cut(s)	47, 68, 305
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	2 cut(s)	287, 909
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	2 cut(s)	333, 933
TaiI	ACGT	2 cut(s)	627, 838
TaqI	TCGA	1 cut(s)	819
TaqII	GACCGA	1 cut(s)	1035
TasI	AATT	5 cut(s)	144, 173, 193, 213, 314
TatI	WGTACW	1 cut(s)	22
Tru1I	TTAA	5 cut(s)	212, 255, 279, 513, 591
Tru9I	TTAA	5 cut(s)	212, 255, 279, 513, 591
TscAI	CASTG	1 cut(s)	902
TseFI	GTSAC	3 cut(s)	321, 853, 920
Tsp45I	GTSAC	3 cut(s)	321, 853, 920
TspDTI	ATGAA	8 cut(s)	186, 216, 369, 428, 440, 570, 674, 996
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	1 cut(s)	902
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	3 cut(s)	56, 485, 1052
XapI	RAATTY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	2 cut(s)	287, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.