Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004262

Physical Location & Seq

Genomic Coordinates Forward (+)

49722737 .. 49726266

Gene Structure 3530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG276500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGCTGCTTTAGTTGTTGTGTACAAGATGATACCGATACAGCTGCGGATCATGGACCATATGTACCACATGGCTCAGCAGGCAATGGCTACCATCCCAGAGAAGCTGCGCAGAGGGATACTCAGATTGTAAATATACAACCAATTGCTGTTGCTGCCATTCCAGTAGATGAATTGAAAGATCTGACTGATAATTTTGGCACAAAGGCCTTAATTGGTGAGGGTTCATATGGAAGAGTATATTATGGTGTTCTTAAGAGTGGGCCTGCTGCTGCTATTAAGAAGCTAGATGCCAGTAAACAACCACACCAAGAATTTTTGTCACAGGTCTCCATGGTTTCAAGACTAAAACATGAAAATGTCGTTGAACTTGTTGGTTATTGTATTGATGGCCCTCTGCGTCTCCTTGCCTATGAGTATGCTCCTAATGGGTCTCTTCATGATATTCTTCATGGACGGAAAGGTGTCAAGGGGTCAGTTCCAGGTCCAGTTCTGTCATGGACGCAAAGGGTTAAAATCGCAGTTGGGGCAGCAAGAGGACTTGAATATTTACATGAAAAGGCTCAGCCCCATATAATCCATCGTGATATTAAGTCCTGCAATATATTGCTTTTTGAAGATGACGTTGCAAAGATTGCTGATTTTGATCTGTCAAATCAAGCCCCTGATATGGCAGCTCGTCTTCATTCCACTCGTGTTCTTGGGACATTTGGTTATCATGCTCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

243

Amino Acids

26.38

Weight (kDa)

6.3

Isoelectric Point (pI)

20.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	69 - 243	1.3e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	70 - 243	5.9e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48210 AT1G48220 AT3G17410 AT3G17410
fragaria_vesca	FvH4_4g21440 FvH4_4g21440 FvH4_4g21440
malus_domestica	MD13G1141200.v1.1 MD16G1137300.v1.1
prunus_persica	Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1 Prupe.1G106400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0427371
rosa_laevigata	RLG00000007249
rosa_multiflora	Rmu_co8130356.1_g000001 Rmu_co8298183.1_g000001 Rmu_sc0003813.1_g000019
rosa_roxburghii	Rroxscaffold_1G00008890 Rroxscaffold_5G00369040
rosa_rugosa	Rorug04G0217100
rosa_samantha	Rh4AG273500 Rh4BG279100 Rh4DG276500 Rh5DG369800
rosa_wichuraiana	Rw4G023720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	111
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	2 cut(s)	24, 66
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	178, 342, 368, 545, 617
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	4 cut(s)	44, 107, 286, 677
AluI	AGCT	4 cut(s)	44, 107, 286, 677
Alw26I	GTCTC	3 cut(s)	334, 407, 438
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	3 cut(s)	207, 263, 391
ApeKI	GCWGC	8 cut(s)	6, 44, 107, 155, 269, 272, 530, 674
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	4 cut(s)	56, 263, 392, 485
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	56, 485
BauI	CACGAG	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	674
BbvI	GCAGC	7 cut(s)	31, 94, 142, 256, 259, 542, 686
BccI	CCATC	3 cut(s)	102, 383, 588
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	112
BcoDI	GTCTC	3 cut(s)	334, 407, 438
BfaI	CTAG	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	112
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	8 cut(s)	7, 45, 108, 156, 270, 273, 531, 675
BlpI	GCTNAGC	2 cut(s)	76, 564
BlsI	GCNGC	8 cut(s)	8, 46, 109, 157, 271, 274, 532, 676
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	2 cut(s)	56, 485
BmgT120I	GGNCC	4 cut(s)	56, 263, 392, 485
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	674
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	708
Bpu1102I	GCTNAGC	2 cut(s)	76, 564
BsaBI	GATNNNNATC	1 cut(s)	645
BsaI	GGTCTC	2 cut(s)	334, 438
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	3 cut(s)	164, 294, 488
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	3 cut(s)	90, 137, 578
BseNI	ACTGG	3 cut(s)	164, 294, 488
BseXI	GCAGC	7 cut(s)	31, 94, 142, 256, 259, 542, 686
BshFI	GGCC	3 cut(s)	209, 265, 393
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	3 cut(s)	334, 407, 438
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	718
BsnI	GGCC	3 cut(s)	209, 265, 393
Bso31I	GGTCTC	2 cut(s)	334, 438
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	49, 181, 646
Bsp1720I	GCTNAGC	2 cut(s)	76, 564
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	3 cut(s)	209, 265, 393
BspCNI	CTCAG	3 cut(s)	89, 136, 577
BspHI	TCATGA	1 cut(s)	439
BspPI	GGATC	1 cut(s)	57
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	2 cut(s)	334, 438
BsrDI	GCAATG	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	164, 294, 488
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	3 cut(s)	49, 181, 646
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	483
Bst6I	CTCTTC	2 cut(s)	229, 441
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	82, 267
BstDEI	CTNAG	3 cut(s)	76, 123, 564
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	52, 184, 649
BstMAI	GTCTC	3 cut(s)	334, 407, 438
BstMBI	GATC	3 cut(s)	49, 181, 646
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 155, 527, 635
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstV1I	GCAGC	7 cut(s)	31, 94, 142, 256, 259, 542, 686
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	209, 265, 393
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	82, 267
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	4 cut(s)	56, 263, 392, 485
CseI	GACGC	2 cut(s)	389, 511
Csp6I	GTAC	2 cut(s)	23, 65
CviAII	CATG	9 cut(s)	53, 71, 334, 353, 440, 452, 498, 554, 719
CviQI	GTAC	2 cut(s)	23, 65
DdeI	CTNAG	3 cut(s)	76, 123, 564
DpnI	GATC	3 cut(s)	51, 183, 648
DpnII	GATC	3 cut(s)	49, 181, 646
Eam1104I	CTCTTC	2 cut(s)	229, 441
EarI	CTCTTC	2 cut(s)	229, 441
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	209
Eco31I	GGTCTC	2 cut(s)	334, 438
Eco47I	GGWCC	2 cut(s)	56, 485
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	9 cut(s)	56, 74, 337, 356, 443, 455, 501, 557, 722
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	9 cut(s)	52, 70, 333, 352, 439, 451, 497, 553, 718
FauNDI	CATATG	2 cut(s)	61, 229
Fnu4HI	GCNGC	8 cut(s)	7, 45, 108, 156, 270, 273, 531, 675
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	8 cut(s)	7, 45, 108, 156, 270, 273, 531, 675
FspBI	CTAG	1 cut(s)	287
FspI	TGCGCA	1 cut(s)	111
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	8 cut(s)	7, 45, 108, 156, 270, 273, 531, 675
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	209, 265, 393
HgaI	GACGC	2 cut(s)	389, 511
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	9 cut(s)	56, 74, 337, 356, 443, 455, 501, 557, 722
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	23, 299
Hpy188I	TCNGA	2 cut(s)	126, 186
Hpy188III	TCNNGA	4 cut(s)	342, 440, 584, 725
Hpy8I	GTNNAC	2 cut(s)	23, 299
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	2 cut(s)	600, 629
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 155, 527, 635
HpyF3I	CTNAG	3 cut(s)	76, 123, 564
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	9 cut(s)	56, 74, 337, 356, 443, 455, 501, 557, 722
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	49, 181, 646
LmnI	GCTCC	2 cut(s)	427, 727
Lsp1109I	GCAGC	7 cut(s)	31, 94, 142, 256, 259, 542, 686
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	3 cut(s)	51, 183, 648
MboI	GATC	3 cut(s)	49, 181, 646
MboII	GAAGA	5 cut(s)	246, 428, 440, 629, 674
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	5 cut(s)	144, 173, 193, 213, 314
MnlI	CCTC	4 cut(s)	108, 214, 405, 530
MseI	TTAA	5 cut(s)	212, 255, 279, 513, 591
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	44
MspCI	CTTAAG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	81, 155, 527, 635
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	2 cut(s)	61, 229
NdeII	GATC	3 cut(s)	49, 181, 646
NlaIII	CATG	9 cut(s)	56, 74, 337, 356, 443, 455, 501, 557, 722
NmuCI	GTSAC	1 cut(s)	321
NsbI	TGCGCA	1 cut(s)	111
PagI	TCATGA	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	209
PkrI	GCNGC	8 cut(s)	8, 46, 109, 157, 271, 274, 532, 676
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspPI	GGNCC	4 cut(s)	56, 263, 392, 485
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	24, 66
RsaNI	GTAC	2 cut(s)	23, 65
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	5 cut(s)	212, 255, 279, 513, 591
SatI	GCNGC	8 cut(s)	7, 45, 108, 156, 270, 273, 531, 675
Sau3AI	GATC	3 cut(s)	49, 181, 646
Sau96I	GGNCC	4 cut(s)	56, 263, 392, 485
ScrFI	CCNGG	1 cut(s)	483
SetI	ASST	8 cut(s)	46, 109, 288, 330, 466, 487, 627, 679
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	2 cut(s)	56, 485
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	5 cut(s)	144, 173, 193, 213, 314
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	1 cut(s)	47
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	1 cut(s)	287
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	1 cut(s)	627
TasI	AATT	5 cut(s)	144, 173, 193, 213, 314
TatI	WGTACW	1 cut(s)	22
Tru1I	TTAA	5 cut(s)	212, 255, 279, 513, 591
Tru9I	TTAA	5 cut(s)	212, 255, 279, 513, 591
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	8 cut(s)	6, 44, 107, 155, 269, 272, 530, 674
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	7 cut(s)	186, 216, 369, 428, 440, 570, 674
TspGWI	ACGGA	1 cut(s)	472
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	56, 485
XapI	RAATTY	1 cut(s)	314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.