Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

17813886 .. 17817441

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGTGATAAAGGGAATGCGTGTTGGTAAGTACGAGCTTGGGAGGACACTCGGAGAGGGAAATTCCGCAAAAGTTAAATTTGCTATAGATACTCTTACCGGCGAATCATTCGCCATCAAAATCATCGAGAAGTCGTGTATCACACGTCTTAACGTCTCTTTTCAGATTAAGAGAGAGATTCGAACACTCAAAGTTTTGAAGCATCCAAACATTGTCCGATTACATGAGGTCTTGGCTAGCAAAACCAAGATTTACATGGTTCTGGAATGTGTCACTGGAGGAGACTTATTTGACAGAATTGTCTCGAAAGGAAAGCTTTCGGAAACACAAGGACGAAAAATGTTTCAGCAGTTGATTGATGGAGTCAGCTATTGTCATAACAAGGGCGTTTTTCACAGGGATCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGGCCTTAGTGCTCTGTCTCAACATTATAGGGAAGATGGGTTGCTACATACAACTTGTGGTAGTCCTAACTATGTCGCGCCTGAGGTTCTAGCTAATGAGGGCTATGATGGTGCAGCATCAGATATATGGTCATGTGGAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATGATGCAAACCTTGCAGTTATTTGCCGGAAGATATTCAAAGGGGATCCCCCAATACCTAGATGGATATCACTGGGAGCTAAAACTATGATCAAGAGAATGCTTGATCCTAATCCAGTCACGAGGGTGACAATCGCAGGTATAAAGGCTCATGATTGGTTTAAACATGACTACACTCCTTCAAACTACGATGACGACGATGATGTATACTTGATCCAAGAAGATGTTTTTATGATGAAGGAATATGAAGAAGAGAAGAGCCCTGATTCTCCAACCATTATCAACGCTTTTCAGTTGATTGGAATGTCCTCGTTTCTCGACCTCTCAGGTTTCTTTGAGACAGAGAAATTATCAGAGAGGCAGATAAGATTCACGTCAAATAGTTTAGCTAAAGATTTGTTGGAGAACATCGAAACGATTTTCACGGAGATGGGCTTTTGTTTACAGAAGAAACATGCAAAGTTAAAAGCAATCAAAGAAGAAAGCACTCAAAAAAGGCAATGCGGTTTATCGGTAACGGCTGAGGTTTTCGAGATAAGTCCGTCCCTGAATGTGGTTGAACTAAGAAAATCACATGGCGATTCGTCTCTATATAAACAGTTGTACGAGCGATTATTGAATGAGCTGGGCTCATCATCACAAGTACAGGAGCTTTTAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

432

Amino Acids

48.66

Weight (kDa)

6.62

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 181	5.1e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 175	1.1e-23	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	20 - 163	4.8e-06	Kinase-like
NAF	PF03822	218 - 277	3.7e-17	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	843
AccII	CGCG	1 cut(s)	536
AciI	CCGC	2 cut(s)	66, 1140
AclWI	GGATC	5 cut(s)	408, 677, 690, 737, 844
AcsI	RAATTY	2 cut(s)	61, 77
AfaI	GTAC	3 cut(s)	32, 1241, 1281
AfiI	CCNNNNNNNGG	1 cut(s)	1189
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	199, 676, 819, 1196, 1255
AjiI	CACGTC	2 cut(s)	146, 1011
AleI	CACNNNNGTG	1 cut(s)	761
AluBI	AGCT	9 cut(s)	37, 316, 369, 409, 551, 716, 1025, 1261, 1288
AluI	AGCT	9 cut(s)	37, 316, 369, 409, 551, 716, 1025, 1261, 1288
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	7 cut(s)	160, 276, 307, 480, 632, 968, 1227
AlwI	GGATC	5 cut(s)	408, 677, 690, 737, 844
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	2 cut(s)	61, 77
Asp700I	GAANNNNTTC	2 cut(s)	316, 671
AspLEI	GCGC	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	16, 775
AsuII	TTCGAA	1 cut(s)	181
AsuNHI	GCTAGC	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	540
BamHI	GGATCC	1 cut(s)	682
BanII	GRGCYC	2 cut(s)	899, 1268
BauI	CACGAG	1 cut(s)	757
Bbv12I	GWGCWC	1 cut(s)	472
BbvCI	CCTCAGC	1 cut(s)	1158
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	6 cut(s)	122, 353, 488, 560, 693, 1060
BceAI	ACGGC	1 cut(s)	1170
BclI	TGATCA	1 cut(s)	726
BcoDI	GTCTC	7 cut(s)	160, 276, 307, 480, 632, 968, 1227
BfaI	CTAG	4 cut(s)	237, 410, 548, 696
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	764
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
BmgBI	CACGTC	2 cut(s)	146, 1011
BmiI	GGNNCC	1 cut(s)	684
BmrI	ACTGGG	1 cut(s)	719
BmsI	GCATC	4 cut(s)	211, 418, 584, 631
BmtI	GCTAGC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	1250, 1282
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	1158
Bpu14I	TTCGAA	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	389
BsaBI	GATNNNNATC	2 cut(s)	703, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	1189
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	3 cut(s)	280, 714, 752
Bse21I	CCTNAGG	1 cut(s)	540
Bse3DI	GCAATG	1 cut(s)	1142
Bse8I	GATNNNNATC	2 cut(s)	703, 747
BseGI	GGATG	2 cut(s)	202, 629
BseJI	GATNNNNATC	2 cut(s)	703, 747
BseLI	CCNNNNNNNGG	1 cut(s)	1189
BseMI	GCAATG	1 cut(s)	1142
BseMII	CTCAG	3 cut(s)	531, 975, 1149
BseNI	ACTGG	3 cut(s)	280, 714, 752
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	584
BseYI	CCCAGC	1 cut(s)	1261
BsgI	GTGCAG	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	2 cut(s)	99, 664
BslFI	GGGAC	1 cut(s)	1165
BslI	CCNNNNNNNGG	1 cut(s)	1189
BsmAI	GTCTC	7 cut(s)	160, 276, 307, 480, 632, 968, 1227
BsmBI	CGTCTC	2 cut(s)	160, 1227
BsmFI	GGGAC	1 cut(s)	1165
BsmI	GAATGC	2 cut(s)	21, 741
BsnI	GGCC	1 cut(s)	462
Bsp119I	TTCGAA	1 cut(s)	181
Bsp1286I	GDGCHC	3 cut(s)	472, 899, 1268
Bsp143I	GATC	6 cut(s)	400, 447, 682, 726, 742, 849
BspACI	CCGC	2 cut(s)	66, 1140
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	3 cut(s)	532, 974, 1150
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	1 cut(s)	684
BspMI	ACCTGC	1 cut(s)	764
BspOI	GCTAGC	1 cut(s)	240
BspPI	GGATC	5 cut(s)	408, 677, 690, 737, 844
BspQI	GCTCTTC	1 cut(s)	887
BspT104I	TTCGAA	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	1142
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	3 cut(s)	280, 714, 752
BssAI	RCCGGY	1 cut(s)	98
BssMI	GATC	6 cut(s)	400, 447, 682, 726, 742, 849
BssNAI	GTATAC	1 cut(s)	844
BssSI	CACGAG	1 cut(s)	757
Bst1107I	GTATAC	1 cut(s)	844
Bst2BI	CACGAG	1 cut(s)	757
Bst4CI	ACNGT	1 cut(s)	1236
Bst6I	CTCTTC	2 cut(s)	882, 887
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	5 cut(s)	464, 540, 961, 1158, 1199
BstF5I	GGATG	2 cut(s)	202, 629
BstFNI	CGCG	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	6 cut(s)	403, 450, 685, 729, 745, 852
BstMAI	GTCTC	7 cut(s)	160, 276, 307, 480, 632, 968, 1227
BstMBI	GATC	6 cut(s)	400, 447, 682, 726, 742, 849
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNSI	RCATGY	1 cut(s)	1094
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	584
BstX2I	RGATCY	2 cut(s)	400, 682
BstYI	RGATCY	2 cut(s)	400, 682
BstZ17I	GTATAC	1 cut(s)	844
Bsu36I	CCTNAGG	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	462
BtrI	CACGTC	2 cut(s)	146, 1011
BtsCI	GGATG	2 cut(s)	202, 629
BtsIMutI	CAGTG	3 cut(s)	273, 450, 707
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	1 cut(s)	238
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	1 cut(s)	98
Csp6I	GTAC	3 cut(s)	31, 1240, 1280
CviAII	CATG	7 cut(s)	224, 256, 591, 788, 803, 1091, 1211
CviQI	GTAC	3 cut(s)	31, 1240, 1280
DdeI	CTNAG	5 cut(s)	464, 540, 961, 1158, 1199
DpnI	GATC	6 cut(s)	402, 449, 684, 728, 744, 851
DpnII	GATC	6 cut(s)	400, 447, 682, 726, 742, 849
DraI	TTTAAA	1 cut(s)	799
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	2 cut(s)	882, 887
EarI	CTCTTC	2 cut(s)	882, 887
Eco24I	GRGCYC	2 cut(s)	899, 1268
Eco32I	GATATC	1 cut(s)	705
Eco81I	CCTNAGG	1 cut(s)	540
EcoRV	GATATC	1 cut(s)	705
EcoT38I	GRGCYC	2 cut(s)	899, 1268
Esp3I	CGTCTC	2 cut(s)	160, 1227
FaeI	CATG	7 cut(s)	227, 259, 594, 791, 806, 1094, 1214
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	1165
FatI	CATG	7 cut(s)	223, 255, 590, 787, 802, 1090, 1210
FbaI	TGATCA	1 cut(s)	726
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	2 cut(s)	189, 636
FriOI	GRGCYC	2 cut(s)	899, 1268
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	4 cut(s)	237, 410, 548, 696
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	573
GsaI	CCCAGC	1 cut(s)	1265
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	462
HapII	CCGG	2 cut(s)	99, 664
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	7 cut(s)	227, 259, 594, 791, 806, 1094, 1214
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	6 cut(s)	104, 178, 363, 902, 1005, 1217
HpaII	CCGG	2 cut(s)	99, 664
HphI	GGTGA	2 cut(s)	16, 775
Hpy166II	GTNNAC	2 cut(s)	844, 1079
Hpy188I	TCNGA	6 cut(s)	53, 165, 218, 322, 580, 991
Hpy188III	TCNNGA	9 cut(s)	127, 263, 304, 425, 730, 757, 788, 953, 1168
Hpy8I	GTNNAC	2 cut(s)	844, 1079
Hpy99I	CGWCG	1 cut(s)	836
HpyAV	CCTTC	2 cut(s)	825, 868
HpyCH4III	ACNGT	1 cut(s)	1236
HpyCH4IV	ACGT	3 cut(s)	145, 153, 1010
HpyCH4V	TGCA	5 cut(s)	431, 572, 644, 653, 1094
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	5 cut(s)	464, 540, 961, 1158, 1199
HpySE526I	ACGT	3 cut(s)	145, 153, 1010
Hsp92II	CATG	7 cut(s)	227, 259, 594, 791, 806, 1094, 1214
HspAI	GCGC	1 cut(s)	536
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	6 cut(s)	400, 447, 682, 726, 742, 849
LguI	GCTCTTC	1 cut(s)	887
LmnI	GCTCC	2 cut(s)	713, 1285
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	4 cut(s)	211, 418, 584, 631
MaeI	CTAG	4 cut(s)	237, 410, 548, 696
MaeII	ACGT	3 cut(s)	145, 153, 1010
MaeIII	GTNAC	5 cut(s)	271, 437, 754, 763, 1150
MalI	GATC	6 cut(s)	402, 449, 684, 728, 744, 851
MboI	GATC	6 cut(s)	400, 447, 682, 726, 742, 849
MboII	GAAGA	9 cut(s)	413, 503, 679, 869, 896, 899, 904, 1096, 1127
MflI	RGATCY	2 cut(s)	400, 682
MhlI	GDGCHC	3 cut(s)	472, 899, 1268
MluCI	AATT	4 cut(s)	61, 77, 297, 983
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	2 cut(s)	932, 1017
MroXI	GAANNNNTTC	2 cut(s)	316, 671
MseI	TTAA	6 cut(s)	75, 150, 168, 444, 798, 1100
MslI	CAYNNNNRTG	2 cut(s)	761, 1064
MspI	CCGG	2 cut(s)	99, 664
MssI	GTTTAAAC	1 cut(s)	799
Mva1269I	GAATGC	2 cut(s)	21, 741
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	650
NdeII	GATC	6 cut(s)	400, 447, 682, 726, 742, 849
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	7 cut(s)	227, 259, 594, 791, 806, 1094, 1214
NlaIV	GGNNCC	1 cut(s)	684
NmuCI	GTSAC	4 cut(s)	271, 437, 754, 763
NspI	RCATGY	1 cut(s)	1094
NspV	TTCGAA	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	761
PagI	TCATGA	1 cut(s)	787
PciSI	GCTCTTC	1 cut(s)	887
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PctI	GAATGC	2 cut(s)	21, 741
PdmI	GAANNNNTTC	2 cut(s)	316, 671
PfeI	GAWTC	5 cut(s)	104, 178, 902, 1005, 1217
PkrI	GCNGC	1 cut(s)	574
PleI	GAGTC	1 cut(s)	371
PmeI	GTTTAAAC	1 cut(s)	799
PpsI	GAGTC	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	1261
PspN4I	GGNNCC	1 cut(s)	684
PsuI	RGATCY	2 cut(s)	400, 682
RsaI	GTAC	3 cut(s)	32, 1241, 1281
RsaNI	GTAC	3 cut(s)	31, 1240, 1280
RseI	CAYNNNNRTG	2 cut(s)	761, 1064
SapI	GCTCTTC	1 cut(s)	887
SaqAI	TTAA	6 cut(s)	75, 150, 168, 444, 798, 1100
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	6 cut(s)	400, 447, 682, 726, 742, 849
SchI	GAGTC	1 cut(s)	372
SduI	GDGCHC	3 cut(s)	472, 899, 1268
SfaNI	GCATC	4 cut(s)	211, 418, 584, 631
SfcI	CTRYAG	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	761, 1064
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	4 cut(s)	61, 77, 297, 983
SsiI	CCGC	2 cut(s)	66, 1140
SspMI	CTAG	4 cut(s)	237, 410, 548, 696
TaaI	ACNGT	1 cut(s)	1236
TaiI	ACGT	3 cut(s)	148, 156, 1013
TaqI	TCGA	6 cut(s)	126, 181, 305, 954, 1047, 1167
TasI	AATT	4 cut(s)	61, 77, 297, 983
TatI	WGTACW	1 cut(s)	1279
TfiI	GAWTC	5 cut(s)	104, 178, 902, 1005, 1217
Tru1I	TTAA	6 cut(s)	75, 150, 168, 444, 798, 1100
Tru9I	TTAA	6 cut(s)	75, 150, 168, 444, 798, 1100
TscAI	CASTG	3 cut(s)	280, 457, 714
TseFI	GTSAC	4 cut(s)	271, 437, 754, 763
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	4 cut(s)	271, 437, 754, 763
TspDTI	ATGAA	2 cut(s)	887, 897
TspGWI	ACGGA	2 cut(s)	1076, 1167
TspRI	CASTG	3 cut(s)	280, 457, 714
XapI	RAATTY	2 cut(s)	61, 77
XceI	RCATGY	1 cut(s)	1094
XcmI	CCANNNNNNNNNTGG	2 cut(s)	253, 696
XmiI	GTMKAC	1 cut(s)	843
XmnI	GAANNNNTTC	2 cut(s)	316, 671
XspI	CTAG	4 cut(s)	237, 410, 548, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.