Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

45493565 .. 45498512

Gene Structure 4948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGTCCTAGAATATGTTACTGGCGGGGAATTGTTTGACAAAATTGCACAAAAGGGAAGAGTTACAGAATCTGAAGGTAGAAAGCTTTTCCAACAGTTAATTGATGGTGTGAGCTACTGCCACAACCAAGGCGTTTTCCATCGGGACCTTAAGCTGGAGAATATTCTTGTTGATTCCAAAGGAAACATAAAGATATCTGACTTTGGCCTTAGTGCTTTGCCCCAGCATTTTAGGGAAGATGGGTTGCTGCATACAACCTGTGGAAGCCCAAATTACGTTGCTCCTGAGATCCTCGCTAATAGAGGGTATGATGGTGGCGCCTCTGATATATGGTCATGTGGTGTCATCTTATATGTCATTCTAACGGGTTATCTCCCGTTCGATGATAGGAATCTTGCAGTTCTCTATCAAAAGATATTGAAGGGGGATGTTCAGATACCCAAATGGTTATCACCTGGTGCTCAAAACTTGATAAGAAGGGTTCTCGATCCCAATCCTCTCACTAGAATAAACATGACAGACATCAAGTCAGATGAATGGTTCAAGCAGGATTACTTTCCTGCAAAACCCGACGAAGAAGAGGAAGATATAAATGTTGATACCAAAGATTTGTCAATAAATGAAGCGCCATCTGAAGGGGAGAAGAGTCCAGATTTGCAGCACTCACCCACCCTTATCAATGCCTTTCAGTTGATTGGAATGTCCTCATGTCTAGACCTCTCTGGCTTCTTTGAGAAAGAGGATGTGTCTGAGAGGAAGATCAGATTTACTTCCAACCACTCTGCAAAAGATTTGCTTGAGAGGATTGAAGAAATTGTAACAGAGATGGGATATGGTGTCCAGAAGAAAAATGGAAGGTTAAAGGTGATGCAAGAGAACAAGGGGCAGAGAAATCTGGGTAGTCTCTCAGTTGCAGCAGAGGTGTTTGAGTTAAACCCCACATTATACGTAGTTGAATTAAGAAAATCATACGGAGATCCTTCTGCATATAGACAGTTGTGTAAAAAGCTATCAAATGATTTAGGTGTTCCATCTAGCCAAGAATTGTTGGCCAGCGAGGTATTGAAGTCCAGTTCTTTGCAGAGTCAAACGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

365

Amino Acids

40.85

Weight (kDa)

5.13

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 181	3e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 177	7.8e-25	Protein tyrosine and serine/threonine kinase
NAF	PF03822	223 - 282	2.4e-20	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	283, 482, 971
AcoI	YGGCCR	1 cut(s)	1050
AcuI	CTGAAG	2 cut(s)	93, 654
AcyI	GRCGYC	1 cut(s)	318
AdeI	CACNNNGTG	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	154, 635
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	5 cut(s)	421, 544, 809, 956, 1066
AhdI	GACNNNNNGTC	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	4 cut(s)	85, 114, 154, 1009
AluI	AGCT	4 cut(s)	85, 114, 154, 1009
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	1 cut(s)	908
AlwI	GGATC	3 cut(s)	283, 482, 971
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	205, 1050
ApeKI	GCWGC	3 cut(s)	247, 658, 914
AspLEI	GCGC	2 cut(s)	320, 628
AspS9I	GGNCC	2 cut(s)	4, 145
AsuHPI	GGTGA	3 cut(s)	444, 657, 877
AvaII	GGWCC	2 cut(s)	4, 145
BalI	TGGCCA	1 cut(s)	1052
BanI	GGYRCC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	3 cut(s)	234, 670, 926
BccI	CCATC	7 cut(s)	98, 147, 233, 305, 637, 820, 1039
BciT130I	CCWGG	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	908
BfaI	CTAG	4 cut(s)	8, 504, 713, 1035
BfoI	RGCGCY	2 cut(s)	321, 629
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	248, 659, 915
BlsI	GCNGC	3 cut(s)	249, 660, 916
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	2 cut(s)	4, 145
BmeRI	GACNNNNNGTC	1 cut(s)	526
BmgT120I	GGNCC	2 cut(s)	4, 145
BmiI	GGNNCC	2 cut(s)	146, 319
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	1 cut(s)	858
BpmI	CTGGAG	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	818
BsaAI	YACGTR	1 cut(s)	949
BsaBI	GATNNNNATC	2 cut(s)	390, 492
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 635
Bse1I	ACTGG	2 cut(s)	25, 1071
Bse8I	GATNNNNATC	2 cut(s)	390, 492
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	433, 748
BseJI	GATNNNNATC	2 cut(s)	390, 492
BseLI	CCNNNNNNNGG	2 cut(s)	154, 635
BseMII	CTCAG	3 cut(s)	276, 741, 921
BseNI	ACTGG	2 cut(s)	25, 1071
BseXI	GCAGC	3 cut(s)	234, 670, 926
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	2 cut(s)	207, 1052
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	154, 635
BsmAI	GTCTC	1 cut(s)	908
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	207, 1052
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	4 cut(s)	288, 487, 759, 976
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	207, 1052
BspCNI	CTCAG	3 cut(s)	277, 742, 920
BspLI	GGNNCC	2 cut(s)	146, 319
BspPI	GGATC	3 cut(s)	283, 482, 971
BspT107I	GGYRCC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	25, 1071
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	4 cut(s)	288, 487, 759, 976
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	96, 996
Bst6I	CTCTTC	3 cut(s)	52, 573, 638
BstACI	GRCGYC	1 cut(s)	318
BstAFI	CTTAAG	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	949
BstC8I	GCNNGC	1 cut(s)	1054
BstDEI	CTNAG	4 cut(s)	209, 285, 750, 907
BstF5I	GGATG	2 cut(s)	433, 748
BstH2I	RGCGCY	2 cut(s)	321, 629
BstHHI	GCGC	2 cut(s)	320, 628
BstKTI	GATC	4 cut(s)	291, 490, 762, 979
BstMAI	GTCTC	1 cut(s)	908
BstMBI	GATC	4 cut(s)	288, 487, 759, 976
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	454
BstSNI	TACGTA	1 cut(s)	949
BstV1I	GCAGC	3 cut(s)	234, 670, 926
BstX2I	RGATCY	2 cut(s)	288, 976
BstYI	RGATCY	2 cut(s)	288, 976
BsuRI	GGCC	2 cut(s)	207, 1052
BtsCI	GGATG	2 cut(s)	433, 748
Cac8I	GCNNGC	1 cut(s)	1054
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	2 cut(s)	320, 628
Cfr13I	GGNCC	2 cut(s)	4, 145
CsiI	ACCWGGT	1 cut(s)	454
CviAII	CATG	3 cut(s)	336, 514, 708
CviJI	RGCY	9 cut(s)	85, 114, 154, 207, 267, 726, 1009, 1038, 1052
CviKI_1	RGCY	9 cut(s)	85, 114, 154, 207, 267, 726, 1009, 1038, 1052
DdeI	CTNAG	4 cut(s)	209, 285, 750, 907
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	4 cut(s)	290, 489, 761, 978
DpnII	GATC	4 cut(s)	288, 487, 759, 976
DraIII	CACNNNGTG	1 cut(s)	458
DriI	GACNNNNNGTC	1 cut(s)	526
EaeI	YGGCCR	1 cut(s)	1050
Eam1104I	CTCTTC	3 cut(s)	52, 573, 638
Eam1105I	GACNNNNNGTC	1 cut(s)	526
EarI	CTCTTC	3 cut(s)	52, 573, 638
Eco105I	TACGTA	1 cut(s)	949
Eco130I	CCWWGG	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	4, 145
Eco57I	CTGAAG	2 cut(s)	93, 654
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	127
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	3 cut(s)	339, 517, 711
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	3 cut(s)	335, 513, 707
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	3 cut(s)	248, 659, 915
FokI	GGATG	2 cut(s)	440, 755
Fsp4HI	GCNGC	3 cut(s)	248, 659, 915
FspBI	CTAG	4 cut(s)	8, 504, 713, 1035
GlaI	GCGC	2 cut(s)	319, 627
GluI	GCNGC	3 cut(s)	248, 659, 915
GsaI	CCCAGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	176
HaeII	RGCGCY	2 cut(s)	321, 629
HaeIII	GGCC	2 cut(s)	207, 1052
HhaI	GCGC	2 cut(s)	320, 628
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	339, 517, 711
Hin6I	GCGC	2 cut(s)	318, 626
HinP1I	GCGC	2 cut(s)	318, 626
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	5 cut(s)	68, 173, 391, 646, 1084
HphI	GGTGA	3 cut(s)	444, 657, 877
Hpy188I	TCNGA	8 cut(s)	73, 199, 325, 435, 532, 634, 751, 764
Hpy188III	TCNNGA	6 cut(s)	143, 284, 485, 650, 713, 841
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	6 cut(s)	68, 415, 471, 629, 849, 990
HpyCH4III	ACNGT	2 cut(s)	96, 996
HpyCH4IV	ACGT	2 cut(s)	276, 948
HpyF3I	CTNAG	4 cut(s)	209, 285, 750, 907
HpySE526I	ACGT	2 cut(s)	276, 948
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	339, 517, 711
HspAI	GCGC	2 cut(s)	318, 626
KasI	GGCGCC	1 cut(s)	317
Kzo9I	GATC	4 cut(s)	288, 487, 759, 976
LmnI	GCTCC	1 cut(s)	286
Lsp1109I	GCAGC	3 cut(s)	234, 670, 926
LweI	GCATC	1 cut(s)	858
MabI	ACCWGGT	1 cut(s)	454
MaeI	CTAG	4 cut(s)	8, 504, 713, 1035
MaeII	ACGT	2 cut(s)	276, 948
MaeIII	GTNAC	3 cut(s)	16, 61, 817
MalI	GATC	4 cut(s)	290, 489, 761, 978
MboI	GATC	4 cut(s)	288, 487, 759, 976
MboII	GAAGA	9 cut(s)	69, 248, 587, 590, 596, 655, 769, 821, 856
MflI	RGATCY	2 cut(s)	288, 976
MhlI	GDGCHC	1 cut(s)	463
MlsI	TGGCCA	1 cut(s)	1052
MluCI	AATT	7 cut(s)	29, 42, 99, 271, 813, 956, 1043
MluNI	TGGCCA	1 cut(s)	1052
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	655, 1093
MmeI	TCCRAC	2 cut(s)	115, 798
Mox20I	TGGCCA	1 cut(s)	1052
MscI	TGGCCA	1 cut(s)	1052
MseI	TTAA	5 cut(s)	98, 150, 860, 932, 959
Msp20I	TGGCCA	1 cut(s)	1052
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
NarI	GGCGCC	1 cut(s)	318
NdeII	GATC	4 cut(s)	288, 487, 759, 976
NlaIII	CATG	3 cut(s)	339, 517, 711
NlaIV	GGNNCC	2 cut(s)	146, 319
PfeI	GAWTC	3 cut(s)	68, 173, 391
PkrI	GCNGC	3 cut(s)	249, 660, 916
PleI	GAGTC	2 cut(s)	654, 1092
PluTI	GGCGCC	1 cut(s)	321
PpsI	GAGTC	2 cut(s)	654, 1092
Ppu21I	YACGTR	1 cut(s)	949
PpuMI	RGGWCCY	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	2 cut(s)	146, 319
PspPI	GGNCC	2 cut(s)	4, 145
PspPPI	RGGWCCY	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	288, 976
SaqAI	TTAA	5 cut(s)	98, 150, 860, 932, 959
SatI	GCNGC	3 cut(s)	248, 659, 915
Sau3AI	GATC	4 cut(s)	288, 487, 759, 976
Sau96I	GGNCC	2 cut(s)	4, 145
SchI	GAGTC	2 cut(s)	655, 1093
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	463
SexAI	ACCWGGT	1 cut(s)	454
SfaNI	GCATC	1 cut(s)	858
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	2 cut(s)	4, 145
SmlI	CTYRAG	2 cut(s)	149, 797
SmoI	CTYRAG	2 cut(s)	149, 797
SnaBI	TACGTA	1 cut(s)	949
Sse9I	AATT	7 cut(s)	29, 42, 99, 271, 813, 956, 1043
SsiI	CCGC	1 cut(s)	24
SspDI	GGCGCC	1 cut(s)	317
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	4 cut(s)	8, 504, 713, 1035
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	96, 996
TaiI	ACGT	2 cut(s)	279, 951
TaqI	TCGA	2 cut(s)	381, 486
TasI	AATT	7 cut(s)	29, 42, 99, 271, 813, 956, 1043
TfiI	GAWTC	3 cut(s)	68, 173, 391
Tru1I	TTAA	5 cut(s)	98, 150, 860, 932, 959
Tru9I	TTAA	5 cut(s)	98, 150, 860, 932, 959
TseI	GCWGC	3 cut(s)	247, 658, 914
TspDTI	ATGAA	2 cut(s)	549, 636
TspGWI	ACGGA	1 cut(s)	987
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	4, 145
XbaI	TCTAGA	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	848
XspI	CTAG	4 cut(s)	8, 504, 713, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.