Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

55555855 .. 55560916

Gene Structure 5062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG296300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCTTCTACTAATTCAGCTGATTGTACTTACCATGGAAACGATGCAGGTTGTGGCAAGCAAAACCAAGATTTACATGGTCCTAGAATATGTTACTGGCGGGGAATTGTTTGACAAAATTGCACAAAAGGGAAGAGTTACAGAATCTGAAGGTAGAAAGCTTTTCCAACAGTTAATTGATGGTGTGAGCTACTGCCACAACCAAGGCGTTTTCCATCGGGACCTTAAGCTGGAGAATATTCTTGTTGATTCCAAAGGAAACATAAAGATATCTGACTTTGGCCTTAGTGCTTTGCCCCAGCATTTTAGGGAAGATGGGTTGCTGCATACAACCTGTGGAAGCCCAAATTACGTTGCTCCTGAGATCCTCGCTAATAGAGGGTATGATGGTGGCGCCTCTGATATATGGTCATGTGGTGTCATCTTATATGTCATTCTAACTGGGTATCTCCCGTTCGATGATAGGAATCTTGCAGTTCTCTATCAAAAGATATTGAAGGGGGATGTTCAGATACCCAAATGGTTATCACCTGGTGCTCAAAACTTGATAAGAAGGGTTCTCGATCCCAATCCTCTCACTAGAATAAACATGACAGACATCAAGTCAGATGAATGGTTCAAGCAGGATTACTTTCCTGCAAAACCCGACGAAGAAGAGGAAGATATAAATGTTGATACCAAAGATTTGTCAATAAATGAAGTGCCATCTGAAGGGGAGAAGAGTCCAGATTTGCGGCACTCACCCACCCTTATCAATGCCTTTCAGTTGATTGGAATGTCCTCATGTCTAGACCTCTCTGGCTTCTTTGAGAAAGAGGATGTGTCTGAGAGGAAGATCAGATTTACTTCCAACCACTCTGCAAAAGATTTGCTTGAGAGGATTGAAGAAATTGTAACAGAGATGGGATATGGTGTCCAGAAGAAAAATGGAAGGTTAAAGGTGATGCAAGAGAACAAGGGGCAGAGAAATCTGGGTAGTCTCTCAGTTGCAGCAGAGGTGTTTGAGTTAAGCCCCACATTATACGTAGTTGAATTAAGAAAATCATACGGAGATCCTTCTGCATATAGACAGTTGTGTAAAAAGCTATCAAATGATTTAGGTGTTCCATCTAGCCAAGAATTGTTGGCCAGCGAGGTATTGAAGTCCAGTTCTTTGCAGAGTCAAACGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

390

Amino Acids

43.74

Weight (kDa)

5.29

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	14 - 206	1.1e-53	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	14 - 202	1.3e-27	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	22 - 102	8.6e-06	ABC1 atypical kinase-like domain
NAF	PF03822	248 - 307	2.6e-20	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	392
AciI	CCGC	2 cut(s)	99, 733
AclWI	GGATC	3 cut(s)	358, 557, 1046
AcoI	YGGCCR	1 cut(s)	1125
AcuI	CTGAAG	2 cut(s)	168, 729
AcyI	GRCGYC	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	533
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	229, 710
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	5 cut(s)	496, 619, 884, 1031, 1141
AhdI	GACNNNNNGTC	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	5 cut(s)	19, 160, 189, 229, 1084
AluI	AGCT	5 cut(s)	19, 160, 189, 229, 1084
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	1 cut(s)	983
AlwI	GGATC	3 cut(s)	358, 557, 1046
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	280, 1125
ApeKI	GCWGC	2 cut(s)	322, 989
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	79, 220
AsuHPI	GGTGA	3 cut(s)	519, 732, 952
AvaII	GGWCC	2 cut(s)	79, 220
BalI	TGGCCA	1 cut(s)	1127
BanI	GGYRCC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	2 cut(s)	309, 1001
BccI	CCATC	7 cut(s)	173, 222, 308, 380, 712, 895, 1114
BciT130I	CCWGG	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	983
BfaI	CTAG	4 cut(s)	83, 579, 788, 1110
BfoI	RGCGCY	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	3 cut(s)	323, 734, 990
BlsI	GCNGC	3 cut(s)	324, 735, 991
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	2 cut(s)	79, 220
BmeRI	GACNNNNNGTC	1 cut(s)	601
BmgT120I	GGNCC	2 cut(s)	79, 220
BmiI	GGNNCC	2 cut(s)	221, 394
BmrFI	CCNGG	1 cut(s)	531
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	2 cut(s)	33, 933
BmuI	ACTGGG	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	893
BsaAI	YACGTR	1 cut(s)	1024
BsaBI	GATNNNNATC	2 cut(s)	465, 567
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	33, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 710
Bse1I	ACTGG	3 cut(s)	100, 445, 1146
Bse8I	GATNNNNATC	2 cut(s)	465, 567
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	33, 202
BseGI	GGATG	2 cut(s)	508, 823
BseJI	GATNNNNATC	2 cut(s)	465, 567
BseLI	CCNNNNNNNGG	2 cut(s)	229, 710
BseMII	CTCAG	3 cut(s)	351, 816, 996
BseNI	ACTGG	3 cut(s)	100, 445, 1146
BseXI	GCAGC	2 cut(s)	309, 1001
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	2 cut(s)	282, 1127
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	538
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	229, 710
BsmAI	GTCTC	1 cut(s)	983
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	282, 1127
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp143I	GATC	4 cut(s)	363, 562, 834, 1051
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	99, 733
BspANI	GGCC	2 cut(s)	282, 1127
BspCNI	CTCAG	3 cut(s)	352, 817, 995
BspLI	GGNNCC	2 cut(s)	221, 394
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	3 cut(s)	358, 557, 1046
BspT107I	GGYRCC	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	100, 445, 1146
BssECI	CCNNGG	2 cut(s)	33, 202
BssMI	GATC	4 cut(s)	363, 562, 834, 1051
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	2 cut(s)	33, 202
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	171, 1071
Bst6I	CTCTTC	3 cut(s)	127, 648, 713
BstACI	GRCGYC	1 cut(s)	393
BstAFI	CTTAAG	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	1024
BstC8I	GCNNGC	2 cut(s)	58, 1129
BstDEI	CTNAG	4 cut(s)	284, 360, 825, 982
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	508, 823
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	4 cut(s)	366, 565, 837, 1054
BstMAI	GTCTC	1 cut(s)	983
BstMBI	GATC	4 cut(s)	363, 562, 834, 1051
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSNI	TACGTA	1 cut(s)	1024
BstV1I	GCAGC	2 cut(s)	309, 1001
BstX2I	RGATCY	2 cut(s)	363, 1051
BstYI	RGATCY	2 cut(s)	363, 1051
BsuRI	GGCC	2 cut(s)	282, 1127
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	508, 823
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	58, 1129
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	79, 220
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	5 cut(s)	34, 76, 411, 589, 783
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	4 cut(s)	284, 360, 825, 982
DinI	GGCGCC	1 cut(s)	394
DpnI	GATC	4 cut(s)	365, 564, 836, 1053
DpnII	GATC	4 cut(s)	363, 562, 834, 1051
DraIII	CACNNNGTG	1 cut(s)	533
DriI	GACNNNNNGTC	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	1125
Eam1104I	CTCTTC	3 cut(s)	127, 648, 713
Eam1105I	GACNNNNNGTC	1 cut(s)	601
EarI	CTCTTC	3 cut(s)	127, 648, 713
Eco105I	TACGTA	1 cut(s)	1024
Eco130I	CCWWGG	2 cut(s)	33, 202
Eco32I	GATATC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	79, 220
Eco57I	CTGAAG	2 cut(s)	168, 729
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	270
EcoT14I	CCWWGG	2 cut(s)	33, 202
EgeI	GGCGCC	1 cut(s)	394
EheI	GGCGCC	1 cut(s)	394
ErhI	CCWWGG	2 cut(s)	33, 202
FaeI	CATG	5 cut(s)	37, 79, 414, 592, 786
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	5 cut(s)	33, 75, 410, 588, 782
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	3 cut(s)	323, 734, 990
FokI	GGATG	2 cut(s)	515, 830
Fsp4HI	GCNGC	3 cut(s)	323, 734, 990
FspBI	CTAG	4 cut(s)	83, 579, 788, 1110
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	3 cut(s)	323, 734, 990
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	282, 1127
HhaI	GCGC	1 cut(s)	395
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	5 cut(s)	37, 79, 414, 592, 786
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	143, 248, 466, 721, 1159
HphI	GGTGA	3 cut(s)	519, 732, 952
Hpy188I	TCNGA	8 cut(s)	148, 274, 400, 510, 607, 709, 826, 839
Hpy188III	TCNNGA	6 cut(s)	218, 359, 560, 725, 788, 916
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	6 cut(s)	143, 490, 546, 704, 924, 1065
HpyCH4III	ACNGT	2 cut(s)	171, 1071
HpyCH4IV	ACGT	2 cut(s)	351, 1023
HpyF3I	CTNAG	4 cut(s)	284, 360, 825, 982
HpySE526I	ACGT	2 cut(s)	351, 1023
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	5 cut(s)	37, 79, 414, 592, 786
HspAI	GCGC	1 cut(s)	393
KasI	GGCGCC	1 cut(s)	392
Kzo9I	GATC	4 cut(s)	363, 562, 834, 1051
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	2 cut(s)	309, 1001
LweI	GCATC	2 cut(s)	33, 933
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	4 cut(s)	83, 579, 788, 1110
MaeII	ACGT	2 cut(s)	351, 1023
MaeIII	GTNAC	3 cut(s)	91, 136, 892
MalI	GATC	4 cut(s)	365, 564, 836, 1053
MboI	GATC	4 cut(s)	363, 562, 834, 1051
MboII	GAAGA	9 cut(s)	144, 323, 662, 665, 671, 730, 844, 896, 931
MflI	RGATCY	2 cut(s)	363, 1051
MhlI	GDGCHC	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	1127
MluCI	AATT	8 cut(s)	12, 104, 117, 174, 346, 888, 1031, 1118
MluNI	TGGCCA	1 cut(s)	1127
Mly113I	GGCGCC	1 cut(s)	393
MlyI	GAGTC	2 cut(s)	730, 1168
MmeI	TCCRAC	2 cut(s)	190, 873
Mox20I	TGGCCA	1 cut(s)	1127
MscI	TGGCCA	1 cut(s)	1127
MseI	TTAA	5 cut(s)	173, 225, 935, 1007, 1034
Msp20I	TGGCCA	1 cut(s)	1127
MspA1I	CMGCKG	1 cut(s)	19
MspCI	CTTAAG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
NarI	GGCGCC	1 cut(s)	393
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	363, 562, 834, 1051
NlaIII	CATG	5 cut(s)	37, 79, 414, 592, 786
NlaIV	GGNNCC	2 cut(s)	221, 394
PfeI	GAWTC	3 cut(s)	143, 248, 466
PkrI	GCNGC	3 cut(s)	324, 735, 991
PleI	GAGTC	2 cut(s)	729, 1167
PluTI	GGCGCC	1 cut(s)	396
PpsI	GAGTC	2 cut(s)	729, 1167
Ppu21I	YACGTR	1 cut(s)	1024
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	221, 394
PspPI	GGNCC	2 cut(s)	79, 220
PspPPI	RGGWCCY	1 cut(s)	220
PsrI	GAACNNNNNNTAC	2 cut(s)	437, 469
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	363, 1051
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	5 cut(s)	173, 225, 935, 1007, 1034
SatI	GCNGC	3 cut(s)	323, 734, 990
Sau3AI	GATC	4 cut(s)	363, 562, 834, 1051
Sau96I	GGNCC	2 cut(s)	79, 220
SchI	GAGTC	2 cut(s)	730, 1168
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	538
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	2 cut(s)	33, 933
SfoI	GGCGCC	1 cut(s)	394
SinI	GGWCC	2 cut(s)	79, 220
SmlI	CTYRAG	2 cut(s)	224, 872
SmoI	CTYRAG	2 cut(s)	224, 872
SnaBI	TACGTA	1 cut(s)	1024
Sse9I	AATT	8 cut(s)	12, 104, 117, 174, 346, 888, 1031, 1118
SsiI	CCGC	2 cut(s)	99, 733
SspDI	GGCGCC	1 cut(s)	392
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	4 cut(s)	83, 579, 788, 1110
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	2 cut(s)	33, 202
TaaI	ACNGT	2 cut(s)	171, 1071
TaiI	ACGT	2 cut(s)	354, 1026
TaqI	TCGA	2 cut(s)	456, 561
TasI	AATT	8 cut(s)	12, 104, 117, 174, 346, 888, 1031, 1118
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	1 cut(s)	736
TfiI	GAWTC	3 cut(s)	143, 248, 466
Tru1I	TTAA	5 cut(s)	173, 225, 935, 1007, 1034
Tru9I	TTAA	5 cut(s)	173, 225, 935, 1007, 1034
TseI	GCWGC	2 cut(s)	322, 989
TspDTI	ATGAA	2 cut(s)	624, 711
TspGWI	ACGGA	1 cut(s)	1062
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	79, 220
XbaI	TCTAGA	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	2 cut(s)	73, 923
XspI	CTAG	4 cut(s)	83, 579, 788, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.