Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

19659114 .. 19660458

Gene Structure 1345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGTGATCACGCAGAAAGGTAATAGAGATTATAGTAAAAAGAGAATACAAGTGGGAAAATACGAGTTGGGAAAGACTCTGGGAGAGGGCAGTTTCGGCAAAGTCAAGTTTGCTACGAACGTGGAGTCAGGCCAACCCTTTGCGGTTAAGATTCTGGAGAGGAAGAGAATCATTGACCTAAACATGGCCAACAAGATAACAAGGGAGATTGAAACTTTGAAGCTTCTCAAACATCCAAACGTCGTCAGATTACACGAGATTGTGGCGAGTAAAACCCAGATTTGTATGGTCCTAGAATACGTTGAAGGGGGTGATTTGTTCGACAAAATCCGTCATAACGGAAGGGTCACAGAAGCCGAAGGCAGGAAGCTTTTCCAACAGTTAATTGATGGCGTTAGCTACTGCCACAACAAAGGCGTTTACCATCGGGATCTTAAGCTGGAGAACATTCTCCTAGACGAGGAAGGAAACATAAAGATATGTGACTTTGGCCTTAGCGCCTTGCCCCAGCATTTAAAAAAAGATGGGTTACTGCATACAATTTGTGGAACCCCTAACTATGTTGCTCCTGAGATTCTCATTAATCGGGGGTACAATGGCGCCACCGCCGATACATGGTCTTGTGGTGTGATCTTGTTTGCCATTCTTTCGGGGTTCTGTCCTTTTGACGATAAAAATCTTGCAGTTCTTTATCACAAGATATATAAAGGGAATTTCAAAATACCCGATTGGTTATCACCTGATGCAAAATCCTTGATCAGAAGGATTCTGGATCCGAATCCTGTCACCAGAATAAACATGAGAGGCATAAAGTCAGATGAATGGTTCAACCAGGACTACACTCCTGCAAAACCCGATGAAGACGAAGAAGAAGGAGATATACATGTCGATGATGAAGAAGCTTTAAAGATTCCAGATTTGCATTGCTCGACTGTTAAGATGTCGGCCGGGCAATTCGGTTGTCATGGTCTGTCATTGACACGTGTCAGGCCACAGCGATTGCGGGTACGAGCTGGGTGCGGGACAGATCCTAACGTCATGCCCCCACCCTTACTCAATGCCTATGAGTTTATTGGATTCTCCTCATGTCTAGATCTCTCCGGCTTCTTCTGGTCAAACATACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

376

Amino Acids

42.29

Weight (kDa)

7.57

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 276	1.8e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 271	1.5e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	599
AciI	CCGC	4 cut(s)	143, 606, 1003, 1020
AclWI	GGATC	4 cut(s)	438, 767, 780, 1022
AcoI	YGGCCR	2 cut(s)	186, 945
AcsI	RAATTY	1 cut(s)	712
AcvI	CACGTG	1 cut(s)	983
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	2 cut(s)	593, 1008
AfiI	CCNNNNNNNGG	4 cut(s)	184, 363, 460, 615
AflII	CTTAAG	1 cut(s)	434
AflIII	ACRYGT	3 cut(s)	883, 980, 982
AgsI	TTSAA	5 cut(s)	212, 220, 305, 718, 829
AjnI	CCWGG	1 cut(s)	831
AluBI	AGCT	6 cut(s)	223, 370, 399, 439, 902, 1013
AluI	AGCT	6 cut(s)	223, 370, 399, 439, 902, 1013
AlwI	GGATC	4 cut(s)	438, 767, 780, 1022
AoxI	GGCC	5 cut(s)	130, 186, 490, 945, 989
ApoI	RAATTY	1 cut(s)	712
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AseI	ATTAAT	1 cut(s)	582
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	500, 602
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	949
AsuHPI	GGTGA	4 cut(s)	16, 323, 729, 778
AvaII	GGWCC	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	772
BanI	GGYRCC	1 cut(s)	599
BarI	GAAGNNNNNNTAC	2 cut(s)	864, 896
BauI	CACGAG	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	983
BbsI	GAAGAC	1 cut(s)	867
BccI	CCATC	3 cut(s)	383, 432, 518
BcgI	CGANNNNNNTGC	2 cut(s)	999, 1033
BciT130I	CCWGG	1 cut(s)	833
BclI	TGATCA	2 cut(s)	6, 756
BcnI	CCSGG	1 cut(s)	949
BfaI	CTAG	3 cut(s)	293, 455, 1091
BfoI	RGCGCY	2 cut(s)	501, 603
BfrI	CTTAAG	1 cut(s)	434
BglII	AGATCT	1 cut(s)	1093
Bme1390I	CCNGG	2 cut(s)	833, 949
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	3 cut(s)	550, 601, 774
BmrFI	CCNGG	2 cut(s)	833, 949
BmsI	GCATC	1 cut(s)	733
BoxI	GACNNNNGTC	1 cut(s)	983
BpiI	GAAGAC	1 cut(s)	867
BpmI	CTGGAG	2 cut(s)	176, 461
Bpu10I	CCTNAGC	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	949
BsaAI	YACGTR	1 cut(s)	983
BsaBI	GATNNNNATC	2 cut(s)	675, 777
BsaHI	GRCGYC	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 363, 460, 615
Bse3DI	GCAATG	1 cut(s)	922
Bse8I	GATNNNNATC	2 cut(s)	675, 777
BseBI	CCWGG	1 cut(s)	833
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	2 cut(s)	675, 777
BseLI	CCNNNNNNNGG	4 cut(s)	184, 363, 460, 615
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	1 cut(s)	561
BseRI	GAGGAG	1 cut(s)	1072
BseX3I	CGGCCG	1 cut(s)	945
BseYI	CCCAGC	2 cut(s)	507, 1013
Bsh1285I	CGRYCG	1 cut(s)	948
BshFI	GGCC	5 cut(s)	132, 188, 492, 947, 991
BshNI	GGYRCC	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	948
BsiSI	CCGG	2 cut(s)	948, 1101
BslFI	GGGAC	1 cut(s)	1036
BslI	CCNNNNNNNGG	4 cut(s)	184, 363, 460, 615
BsmFI	GGGAC	1 cut(s)	1036
BsnI	GGCC	5 cut(s)	132, 188, 492, 947, 991
Bsp143I	GATC	7 cut(s)	6, 430, 630, 756, 772, 1027, 1093
BspACI	CCGC	4 cut(s)	143, 606, 1003, 1020
BspANI	GGCC	5 cut(s)	132, 188, 492, 947, 991
BspCNI	CTCAG	1 cut(s)	562
BspLI	GGNNCC	3 cut(s)	550, 601, 774
BspPI	GGATC	4 cut(s)	438, 767, 780, 1022
BspT107I	GGYRCC	1 cut(s)	599
BspTI	CTTAAG	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	922
BssMI	GATC	7 cut(s)	6, 430, 630, 756, 772, 1027, 1093
BssNI	GRCGYC	1 cut(s)	600
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	2 cut(s)	381, 934
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	600
BstAFI	CTTAAG	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	983
BstDEI	CTNAG	2 cut(s)	494, 570
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	2 cut(s)	501, 603
BstHHI	GCGC	2 cut(s)	500, 602
BstKTI	GATC	7 cut(s)	9, 433, 633, 759, 775, 1030, 1096
BstMBI	GATC	7 cut(s)	6, 430, 630, 756, 772, 1027, 1093
BstMCI	CGRYCG	1 cut(s)	948
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	833
BstNSI	RCATGY	1 cut(s)	887
BstPAI	GACNNNNGTC	1 cut(s)	983
BstSCI	CCNGG	2 cut(s)	831, 947
BstV2I	GAAGAC	1 cut(s)	867
BstX2I	RGATCY	4 cut(s)	430, 772, 1027, 1093
BstYI	RGATCY	4 cut(s)	430, 772, 1027, 1093
BstZI	CGGCCG	1 cut(s)	945
BsuRI	GGCC	5 cut(s)	132, 188, 492, 947, 991
BtsCI	GGATG	1 cut(s)	232
CfoI	GCGC	2 cut(s)	500, 602
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	592, 1007
CspCI	CAANNNNNGTGG	2 cut(s)	981, 1016
CviAII	CATG	7 cut(s)	184, 615, 799, 884, 965, 1039, 1086
CviQI	GTAC	2 cut(s)	592, 1007
DdeI	CTNAG	2 cut(s)	494, 570
DinI	GGCGCC	1 cut(s)	601
DpnI	GATC	7 cut(s)	8, 432, 632, 758, 774, 1029, 1095
DpnII	GATC	7 cut(s)	6, 430, 630, 756, 772, 1027, 1093
DraI	TTTAAA	2 cut(s)	516, 906
EaeI	YGGCCR	2 cut(s)	186, 945
EagI	CGGCCG	1 cut(s)	945
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	945
Eco47I	GGWCC	1 cut(s)	289
Eco52I	CGGCCG	1 cut(s)	945
Eco72I	CACGTG	1 cut(s)	983
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	831
EgeI	GGCGCC	1 cut(s)	601
EheI	GGCGCC	1 cut(s)	601
FaeI	CATG	7 cut(s)	187, 618, 802, 887, 968, 1042, 1089
FaqI	GGGAC	1 cut(s)	1036
FatI	CATG	7 cut(s)	183, 614, 798, 883, 964, 1038, 1085
FauI	CCCGC	2 cut(s)	996, 1013
FbaI	TGATCA	2 cut(s)	6, 756
FokI	GGATG	1 cut(s)	219
FspBI	CTAG	3 cut(s)	293, 455, 1091
GlaI	GCGC	2 cut(s)	499, 601
GsaI	CCCAGC	2 cut(s)	511, 1017
GsuI	CTGGAG	2 cut(s)	176, 461
HaeII	RGCGCY	2 cut(s)	501, 603
HaeIII	GGCC	5 cut(s)	132, 188, 492, 947, 991
HapII	CCGG	2 cut(s)	948, 1101
HhaI	GCGC	2 cut(s)	500, 602
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	7 cut(s)	187, 618, 802, 887, 968, 1042, 1089
Hin6I	GCGC	2 cut(s)	498, 600
HinP1I	GCGC	2 cut(s)	498, 600
HindIII	AAGCTT	3 cut(s)	221, 368, 900
HinfI	GANTC	9 cut(s)	76, 125, 151, 168, 574, 766, 778, 910, 1077
HpaII	CCGG	2 cut(s)	948, 1101
HphI	GGTGA	4 cut(s)	16, 323, 729, 778
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	4 cut(s)	248, 761, 777, 817
Hpy188III	TCNNGA	6 cut(s)	155, 428, 569, 770, 914, 1091
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	6 cut(s)	299, 336, 353, 458, 756, 866
HpyCH4III	ACNGT	2 cut(s)	381, 934
HpyCH4IV	ACGT	5 cut(s)	120, 240, 300, 982, 1035
HpyCH4V	TGCA	5 cut(s)	535, 683, 746, 848, 922
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	2 cut(s)	494, 570
HpySE526I	ACGT	5 cut(s)	120, 240, 300, 982, 1035
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	7 cut(s)	187, 618, 802, 887, 968, 1042, 1089
HspAI	GCGC	2 cut(s)	498, 600
KasI	GGCGCC	1 cut(s)	599
Ksp22I	TGATCA	2 cut(s)	6, 756
Kzo9I	GATC	7 cut(s)	6, 430, 630, 756, 772, 1027, 1093
LmnI	GCTCC	1 cut(s)	571
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	3 cut(s)	293, 455, 1091
MaeII	ACGT	5 cut(s)	120, 240, 300, 982, 1035
MaeIII	GTNAC	4 cut(s)	346, 482, 528, 784
MalI	GATC	7 cut(s)	8, 432, 632, 758, 774, 1029, 1095
MboI	GATC	7 cut(s)	6, 430, 630, 756, 772, 1027, 1093
MboII	GAAGA	6 cut(s)	175, 872, 878, 881, 908, 1099
MflI	RGATCY	4 cut(s)	430, 772, 1027, 1093
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	4 cut(s)	384, 540, 712, 953
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	1 cut(s)	600
MlyI	GAGTC	2 cut(s)	70, 134
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	5 cut(s)	79, 153, 454, 797, 1093
Mox20I	TGGCCA	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	7 cut(s)	147, 383, 435, 515, 582, 905, 936
MslI	CAYNNNNRTG	1 cut(s)	888
Msp20I	TGGCCA	1 cut(s)	188
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	2 cut(s)	948, 1101
MspR9I	CCNGG	2 cut(s)	833, 949
MvaI	CCWGG	1 cut(s)	833
MwoI	GCNNNNNNNGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	600
NciI	CCSGG	1 cut(s)	949
NdeII	GATC	7 cut(s)	6, 430, 630, 756, 772, 1027, 1093
NlaIII	CATG	7 cut(s)	187, 618, 802, 887, 968, 1042, 1089
NlaIV	GGNNCC	3 cut(s)	550, 601, 774
NmuCI	GTSAC	3 cut(s)	346, 482, 784
NspI	RCATGY	1 cut(s)	887
PciI	ACATGT	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	7 cut(s)	151, 168, 574, 766, 778, 910, 1077
PleI	GAGTC	2 cut(s)	70, 133
PluTI	GGCGCC	1 cut(s)	603
PmaCI	CACGTG	1 cut(s)	983
PmlI	CACGTG	1 cut(s)	983
PpsI	GAGTC	2 cut(s)	70, 133
Ppu21I	YACGTR	1 cut(s)	983
PscI	ACATGT	1 cut(s)	883
PshAI	GACNNNNGTC	1 cut(s)	983
PshBI	ATTAAT	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	831
PspCI	CACGTG	1 cut(s)	983
PspFI	CCCAGC	2 cut(s)	507, 1013
PspGI	CCWGG	1 cut(s)	831
PspN4I	GGNNCC	3 cut(s)	550, 601, 774
PspPI	GGNCC	1 cut(s)	289
PsuI	RGATCY	4 cut(s)	430, 772, 1027, 1093
RsaI	GTAC	2 cut(s)	593, 1008
RsaNI	GTAC	2 cut(s)	592, 1007
RseI	CAYNNNNRTG	1 cut(s)	888
SaqAI	TTAA	7 cut(s)	147, 383, 435, 515, 582, 905, 936
Sau3AI	GATC	7 cut(s)	6, 430, 630, 756, 772, 1027, 1093
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	2 cut(s)	70, 134
ScrFI	CCNGG	2 cut(s)	833, 949
SfaNI	GCATC	1 cut(s)	733
SfoI	GGCGCC	1 cut(s)	601
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	4 cut(s)	384, 540, 712, 953
SsiI	CCGC	4 cut(s)	143, 606, 1003, 1020
SspDI	GGCGCC	1 cut(s)	599
SspMI	CTAG	3 cut(s)	293, 455, 1091
StyD4I	CCNGG	2 cut(s)	831, 947
TaaI	ACNGT	2 cut(s)	381, 934
TaiI	ACGT	5 cut(s)	123, 243, 303, 985, 1038
TaqI	TCGA	3 cut(s)	321, 888, 929
TasI	AATT	4 cut(s)	384, 540, 712, 953
TfiI	GAWTC	7 cut(s)	151, 168, 574, 766, 778, 910, 1077
Tru1I	TTAA	7 cut(s)	147, 383, 435, 515, 582, 905, 936
Tru9I	TTAA	7 cut(s)	147, 383, 435, 515, 582, 905, 936
TseFI	GTSAC	3 cut(s)	346, 482, 784
Tsp45I	GTSAC	3 cut(s)	346, 482, 784
TspDTI	ATGAA	3 cut(s)	834, 873, 909
TspGWI	ACGGA	2 cut(s)	320, 354
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	289
VspI	ATTAAT	1 cut(s)	582
XagI	CCTNNNNNAGG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	712
XbaI	TCTAGA	1 cut(s)	1090
XceI	RCATGY	1 cut(s)	887
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	3 cut(s)	293, 455, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.