Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

37774598 .. 37774753

Gene Structure 156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0218800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGGACAGGCTGTAGAAGGGATCGCGAGACAACCAGACGCGGAAGGAAAAATACAGGGTACTTTCTTGCTTAGTCTAGCTTTCATGGAAGCTTTAACAATTTATGGGCTAGTTGCAGCATTAGCTCTTTTATTTTTGCGAATCCTTTTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

51

Amino Acids

5.53

Weight (kDa)

4.87

Isoelectric Point (pI)

17.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	2 - 42	2.5e-10	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	26, 41
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	61
AluBI	AGCT	3 cut(s)	80, 92, 125
AluI	AGCT	3 cut(s)	80, 92, 125
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	36, 68
BbvI	GCAGC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	77, 110
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	128
Bsh1236I	CGCG	2 cut(s)	26, 41
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	21
Bsp68I	TCGCGA	1 cut(s)	26
BspACI	CCGC	1 cut(s)	41
BspFNI	CGCG	2 cut(s)	26, 41
BspPI	GGATC	1 cut(s)	29
BssMI	GATC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	71
BstFNI	CGCG	2 cut(s)	26, 41
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	2 cut(s)	26, 41
BstV1I	GCAGC	1 cut(s)	128
BtuMI	TCGCGA	1 cut(s)	26
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	5 cut(s)	11, 80, 92, 109, 125
CviKI_1	RGCY	5 cut(s)	11, 80, 92, 109, 125
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	86, 105
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	77, 110
GluI	GCNGC	1 cut(s)	117
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	1 cut(s)	141
Hpy188III	TCNNGA	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	11, 38
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	2 cut(s)	41, 48
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	77, 110
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MluCI	AATT	1 cut(s)	99
MseI	TTAA	1 cut(s)	95
MvnI	CGCG	2 cut(s)	26, 41
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	1 cut(s)	88
NruI	TCGCGA	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	118
RruI	TCGCGA	1 cut(s)	26
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	21
SetI	ASST	3 cut(s)	82, 94, 127
SfcI	CTRYAG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	2 cut(s)	77, 110
TasI	AATT	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	141
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	73
XspI	CTAG	2 cut(s)	77, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.