Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003218

Physical Location & Seq

Genomic Coordinates Reverse (-)

24576403 .. 24581003

Gene Structure 4601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21530.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGTGATCATAAGCAAGGGGCAGGAGAAGAGCAGTGATCAGAGTAAGAAGGGAATGCGACTTGGGAAATACGAGTTGGGGAAGACTTTGGGTGAGGGCAATTTCGGCAAAGTCAAGTTTGCTAAGGACGTCGGCTCCGGCCAACCTTTCGCCGTTAAGATTCTTGAGAAGAAGAGAATCACTGATCTCAATATCGCCGACCAGATAAAGAGGGAGATTGGCACTTTGAAGCTTCTAAAACATCCAAACGTAGTCCGATTACATGAGGTCGTGGCAAGCAAAACCAAGATTTACATGGTCTTAGAATATGTTACTGGCGGGGAATTGTTTGATAAAATTGCACAAAAGGGAAGACTTAAAGAGTCCGAAGGTAGAAAGCTTTTTCAACAGTTAATTGATGGTGTGAGCTACTGCCACAACCAAGGTGTTTTCCATCGGGATCTTAAGCTGGAGAATATTCTTGTTGATTCCAAAGGAAACATAAAGATATCTGACTTTGGCCTTAGTGCTTTGCCGCAGCATTTTAGGGAAGATGGTTTGCTGCATACAACCTGTGGAAGCCCCAATTATGTTGCCCCTGAGATCCTTGCTAATAGAGGGTATGATGGTGGCACCTCTGATATATGGTCATGTGGTGTCATCTTATATGTCATTCTAACAGGGTATCTCCCGTTCGATGATAGGAATCTTGCAGTTCTCTATCAAAAGATCTTGAAGGGGGATGTTCAGATACCCAAATGGTTATCACCTGGAGCACAAAACTTGATAAGAAGGGTTCTCGATCCCAGTCCTCTCACCAGAATAAACATGACAGACATCAAGTCAGATGAATGGTTCAAGCAGGATTACTTTCCTGCAAAAGCTGACGAAGAAGAAGAAGATATAAACGTTGATACCGAAGCTTATTCAATAAAAGAAGTGCCATCTGAAGGGGAAAAGAGTCCAGATTTGCGGCACTCACCCACCCTTATCAATGCCTTTCAGTTGATTGGAATGTCTTCATGTCTAGACCTCTCTGGATTCTTTGAGAAAGAGGATGTGTCTGAGAGGAAGATCAGATTTACTTCCAACCACTCTGCAAAGGATTTGCTAGAGAGGATTGAAGAAATTGTAATAGAGATGGGATATGCTGTCCAGAAGAAAAATGGAAGGTTAAAGGTGATGCAAGAGAACAAGGGGCAGAGAAATCTGGGCAGTCTCTCAGTTGCAGCAGAGGTGTTTGAGTTAAGCCCAACATTACACGTAGTTGAATTAAGAAAATCATACGGAGATCCGTCTGCATATAGACAGTTGTGTAAAAAGCTATCAAATGAGTTAGGTGTTCCATCGAGCCAAGAATTGTTGGCCAGCGAGGTATTGAAGTCCAGTTCTTTGCAGAGTCAAACGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

464

Amino Acids

51.83

Weight (kDa)

7.61

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	24 - 236	5.7e-61	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 232	1.3e-33	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	46 - 132	4e-06	ABC1 atypical kinase-like domain
NAF	PF03822	278 - 337	9.4e-20	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT1G48260 AT3G17510 AT3G17510
fragaria_vesca	FvH4_1g17990 FvH4_4g21530 FvH4_4g21530 FvH4_4g21530
malus_domestica	MD13G1139700.v1.1 MD16G1136100.v1.1
prunus_persica	Prupe.1G105000_v2.0.a1 Prupe.1G105000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0108461 RchiOBHm_Chr4g0427571
rosa_laevigata	RLG00000007224 RLG00000017671
rosa_multiflora	Rmu_co8240981.1_g000001 Rmu_sc0002372.1_g000045 Rmu_sc0009208.1_g000029 Rmu_sc0009627.1_g000006
rosa_roxburghii	Rroxscaffold_2G00135110 Rroxscaffold_5G00369230
rosa_rugosa	Rorug02G0153600 Rorug04G0218700 Rorug04G0218800
rosa_samantha	Rh2BG215200 Rh2CG206400 Rh2DG209500 Rh4AG275200 Rh4BG281100 Rh4CG296300 Rh4DG278400
rosa_wichuraiana	Rw2G016170 Rw4G023860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	611
AciI	CCGC	3 cut(s)	318, 515, 952
AclI	AACGTT	1 cut(s)	888
AclWI	GGATC	4 cut(s)	447, 577, 776, 1265
AcoI	YGGCCR	2 cut(s)	139, 1344
AcuI	CTGAAG	1 cut(s)	948
AcyI	GRCGYC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	929
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	1240
AgsI	TTSAA	8 cut(s)	229, 386, 715, 838, 909, 1103, 1250, 1360
AhdI	GACNNNNNGTC	1 cut(s)	820
AjnI	CCWGG	1 cut(s)	748
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	7 cut(s)	232, 379, 408, 448, 863, 902, 1303
AluI	AGCT	7 cut(s)	232, 379, 408, 448, 863, 902, 1303
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	1 cut(s)	1202
AlwI	GGATC	4 cut(s)	447, 577, 776, 1265
AoxI	GGCC	3 cut(s)	139, 499, 1344
ApeKI	GCWGC	3 cut(s)	517, 541, 1208
Asp700I	GAANNNNTTC	1 cut(s)	997
AsuHPI	GGTGA	6 cut(s)	16, 104, 738, 787, 951, 1171
BalI	TGGCCA	1 cut(s)	1346
BanI	GGYRCC	1 cut(s)	611
BbsI	GAAGAC	3 cut(s)	89, 358, 990
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	3 cut(s)	528, 529, 1220
BccI	CCATC	7 cut(s)	392, 441, 527, 599, 931, 1114, 1333
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	750
BclI	TGATCA	2 cut(s)	6, 37
BcoDI	GTCTC	1 cut(s)	1202
BfaI	CTAG	2 cut(s)	1007, 1091
BfrI	CTTAAG	1 cut(s)	443
BglII	AGATCT	1 cut(s)	708
BisI	GCNGC	5 cut(s)	515, 518, 542, 953, 1209
BlsI	GCNGC	5 cut(s)	516, 519, 543, 954, 1210
Bme1390I	CCNGG	1 cut(s)	750
BmeRI	GACNNNNNGTC	1 cut(s)	820
BmiI	GGNNCC	2 cut(s)	136, 613
BmrFI	CCNGG	1 cut(s)	750
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	1 cut(s)	1152
BmuI	ACTGGG	1 cut(s)	780
BpiI	GAAGAC	3 cut(s)	89, 358, 990
BpmI	CTGGAG	2 cut(s)	470, 771
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	1243
BsaBI	GATNNNNATC	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse1I	ACTGG	3 cut(s)	319, 786, 1365
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	3 cut(s)	241, 727, 1042
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMII	CTCAG	3 cut(s)	570, 1035, 1215
BseNI	ACTGG	3 cut(s)	319, 786, 1365
BseXI	GCAGC	3 cut(s)	528, 529, 1220
BshFI	GGCC	3 cut(s)	141, 501, 1346
BshNI	GGYRCC	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	757
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmAI	GTCTC	1 cut(s)	1202
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	141, 501, 1346
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	9 cut(s)	6, 37, 184, 439, 582, 708, 781, 1053, 1270
BspACI	CCGC	3 cut(s)	318, 515, 952
BspANI	GGCC	3 cut(s)	141, 501, 1346
BspCNI	CTCAG	3 cut(s)	571, 1036, 1214
BspLI	GGNNCC	2 cut(s)	136, 613
BspPI	GGATC	4 cut(s)	447, 577, 776, 1265
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	611
BspTI	CTTAAG	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	319, 786, 1365
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	9 cut(s)	6, 37, 184, 439, 582, 708, 781, 1053, 1270
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	390, 1290
Bst6I	CTCTTC	2 cut(s)	23, 167
BstACI	GRCGYC	1 cut(s)	129
BstAFI	CTTAAG	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	1243
BstC8I	GCNNGC	2 cut(s)	277, 1348
BstDEI	CTNAG	6 cut(s)	123, 301, 503, 579, 1044, 1201
BstF5I	GGATG	3 cut(s)	241, 727, 1042
BstKTI	GATC	9 cut(s)	9, 40, 187, 442, 585, 711, 784, 1056, 1273
BstMAI	GTCTC	1 cut(s)	1202
BstMBI	GATC	9 cut(s)	6, 37, 184, 439, 582, 708, 781, 1053, 1270
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	748
BstV1I	GCAGC	3 cut(s)	528, 529, 1220
BstV2I	GAAGAC	3 cut(s)	89, 358, 990
BstX2I	RGATCY	4 cut(s)	439, 582, 708, 1270
BstYI	RGATCY	4 cut(s)	439, 582, 708, 1270
BsuRI	GGCC	3 cut(s)	141, 501, 1346
BtsCI	GGATG	3 cut(s)	241, 727, 1042
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 180
Cac8I	GCNNGC	2 cut(s)	277, 1348
CviAII	CATG	5 cut(s)	263, 295, 630, 808, 1002
DdeI	CTNAG	6 cut(s)	123, 301, 503, 579, 1044, 1201
DpnI	GATC	9 cut(s)	8, 39, 186, 441, 584, 710, 783, 1055, 1272
DpnII	GATC	9 cut(s)	6, 37, 184, 439, 582, 708, 781, 1053, 1270
DriI	GACNNNNNGTC	1 cut(s)	820
EaeI	YGGCCR	2 cut(s)	139, 1344
Eam1104I	CTCTTC	2 cut(s)	23, 167
Eam1105I	GACNNNNNGTC	1 cut(s)	820
EarI	CTCTTC	2 cut(s)	23, 167
Eco130I	CCWWGG	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	948
EcoRII	CCWGG	1 cut(s)	748
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	5 cut(s)	266, 298, 633, 811, 1005
FatI	CATG	5 cut(s)	262, 294, 629, 807, 1001
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	2 cut(s)	6, 37
Fnu4HI	GCNGC	5 cut(s)	515, 518, 542, 953, 1209
FokI	GGATG	3 cut(s)	228, 734, 1049
Fsp4HI	GCNGC	5 cut(s)	515, 518, 542, 953, 1209
FspBI	CTAG	2 cut(s)	1007, 1091
GluI	GCNGC	5 cut(s)	515, 518, 542, 953, 1209
GsuI	CTGGAG	2 cut(s)	470, 771
HaeIII	GGCC	3 cut(s)	141, 501, 1346
HapII	CCGG	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	5 cut(s)	266, 298, 633, 811, 1005
HindIII	AAGCTT	3 cut(s)	230, 377, 900
HinfI	GANTC	8 cut(s)	160, 177, 362, 467, 685, 940, 1020, 1378
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	6 cut(s)	16, 104, 738, 787, 951, 1171
Hpy188III	TCNNGA	8 cut(s)	164, 437, 712, 779, 944, 1007, 1017, 1135
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	6 cut(s)	43, 362, 709, 765, 923, 1143
HpyCH4III	ACNGT	2 cut(s)	390, 1290
HpyCH4IV	ACGT	4 cut(s)	129, 249, 888, 1242
HpyCH4V	TGCA	9 cut(s)	341, 544, 692, 857, 1079, 1165, 1208, 1280, 1375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	6 cut(s)	123, 301, 503, 579, 1044, 1201
HpySE526I	ACGT	4 cut(s)	129, 249, 888, 1242
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	5 cut(s)	266, 298, 633, 811, 1005
Ksp22I	TGATCA	2 cut(s)	6, 37
Kzo9I	GATC	9 cut(s)	6, 37, 184, 439, 582, 708, 781, 1053, 1270
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	140, 752
Lsp1109I	GCAGC	3 cut(s)	528, 529, 1220
LweI	GCATC	1 cut(s)	1152
MaeI	CTAG	2 cut(s)	1007, 1091
MaeII	ACGT	4 cut(s)	129, 249, 888, 1242
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	9 cut(s)	8, 39, 186, 441, 584, 710, 783, 1055, 1272
MboI	GATC	9 cut(s)	6, 37, 184, 439, 582, 708, 781, 1053, 1270
MflI	RGATCY	4 cut(s)	439, 582, 708, 1270
MhlI	GDGCHC	1 cut(s)	757
MlsI	TGGCCA	1 cut(s)	1346
MluCI	AATT	8 cut(s)	100, 323, 336, 393, 565, 1107, 1250, 1337
MluNI	TGGCCA	1 cut(s)	1346
MlyI	GAGTC	3 cut(s)	371, 949, 1387
MmeI	TCCRAC	1 cut(s)	1092
Mox20I	TGGCCA	1 cut(s)	1346
MroXI	GAANNNNTTC	1 cut(s)	997
MscI	TGGCCA	1 cut(s)	1346
MseI	TTAA	7 cut(s)	156, 357, 392, 444, 1154, 1226, 1253
Msp20I	TGGCCA	1 cut(s)	1346
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	9 cut(s)	6, 37, 184, 439, 582, 708, 781, 1053, 1270
NlaIII	CATG	5 cut(s)	266, 298, 633, 811, 1005
NlaIV	GGNNCC	2 cut(s)	136, 613
PciSI	GCTCTTC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	894
PctI	GAATGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	997
PfeI	GAWTC	5 cut(s)	160, 177, 467, 685, 1020
PkrI	GCNGC	5 cut(s)	516, 519, 543, 954, 1210
PleI	GAGTC	3 cut(s)	370, 948, 1386
PpsI	GAGTC	3 cut(s)	370, 948, 1386
Ppu21I	YACGTR	1 cut(s)	1243
Psp1406I	AACGTT	1 cut(s)	888
Psp6I	CCWGG	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	2 cut(s)	136, 613
PsrI	GAACNNNNNNTAC	2 cut(s)	656, 688
PsuI	RGATCY	4 cut(s)	439, 582, 708, 1270
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	7 cut(s)	156, 357, 392, 444, 1154, 1226, 1253
SatI	GCNGC	5 cut(s)	515, 518, 542, 953, 1209
Sau3AI	GATC	9 cut(s)	6, 37, 184, 439, 582, 708, 781, 1053, 1270
SchI	GAGTC	3 cut(s)	371, 949, 1387
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	1 cut(s)	757
SfaNI	GCATC	1 cut(s)	1152
SmlI	CTYRAG	2 cut(s)	164, 443
SmoI	CTYRAG	2 cut(s)	164, 443
Sse9I	AATT	8 cut(s)	100, 323, 336, 393, 565, 1107, 1250, 1337
SsiI	CCGC	3 cut(s)	318, 515, 952
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	2 cut(s)	1007, 1091
StyD4I	CCNGG	1 cut(s)	748
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	2 cut(s)	390, 1290
TaiI	ACGT	4 cut(s)	132, 252, 891, 1245
TaqI	TCGA	3 cut(s)	675, 780, 1328
TasI	AATT	8 cut(s)	100, 323, 336, 393, 565, 1107, 1250, 1337
TauI	GCSGC	2 cut(s)	517, 955
TfiI	GAWTC	5 cut(s)	160, 177, 467, 685, 1020
Tru1I	TTAA	7 cut(s)	156, 357, 392, 444, 1154, 1226, 1253
Tru9I	TTAA	7 cut(s)	156, 357, 392, 444, 1154, 1226, 1253
TscAI	CASTG	2 cut(s)	40, 187
TseI	GCWGC	3 cut(s)	517, 541, 1208
TspDTI	ATGAA	2 cut(s)	843, 990
TspGWI	ACGGA	2 cut(s)	1263, 1281
TspRI	CASTG	2 cut(s)	40, 187
Vha464I	CTTAAG	1 cut(s)	443
XbaI	TCTAGA	1 cut(s)	1006
XcmI	CCANNNNNNNNNTGG	2 cut(s)	292, 1142
XmnI	GAANNNNTTC	1 cut(s)	997
XspI	CTAG	2 cut(s)	1007, 1091
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.